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Any 3-methylglutaconic aciduria in which the cause of the disease is a mutation in the SERAC1 gene.
Features include always present findings: Dystonia, Intellectual disability, Loss of previously acquired skills (developmental regression), and Global developmental delay and others; and very common findings: Increased circulating lactate concentration, Inner ear hearing loss (sensorineural hearing impairment), and Spasticity. 29 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 11 | Encephalopathy, Inability to walk, Dystonia |
Muscles | 5 | Shrinkage of the cerebellum (cerebellar atrophy), Low muscle tone (hypotonia), Generalized hypotonia |
Blood and immune system | 2 | Abnormality of the coagulation cascade, Recurrent infections |
Growth and development | 1 | Failure to thrive |
Head and neck | 1 | Microcephaly |
Digestive system | 1 | Feeding difficulties |
Lab test results | 1 | Increased circulating lactate concentration |
Pregnancy and birth | 1 | Neonatal sepsis |
Ears | 1 | Inner ear hearing loss (sensorineural hearing impairment) |
Eyes | 1 | Damage to the optic nerve (optic atrophy) |
To date, SERAC1 deficiency has been identified in more than 67 individuals with MEGD(H)EL syndrome (3-methylglutaconic aciduria with deafness-dystonia, [hepatopathy], encephalopathy, and Leigh-like syndrome) , one consanguineous family with juvenile-onset complicated hereditary spastic paraplegia , and one man with adult-onset generalized dystonia . The following descriptions of the phenotypic features associated with SERAC1 deficiency are based on these reports. Table 3. Select Features of SERAC1 Deficiency
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Muscular hypotonia | 91% | — |
Moderate-to-severe intellectual disability | 88% | 68% of affected persons never learn to walk. |
SERAC1 function has not been fully characterized.
3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome is associated with mutations in the SERAC1 gene on chromosome 6.
Currently, no clear relationship exists between the type and position of the SERAC1 pathogenic variants and phenotype. The level of 3-methylglutaconic aciduria does not correlate with the clinical course.
Source: GeneReviews — "SERAC1 Deficiency"
SERAC1 deficiency should be suspected in an individual with: one of the three main defined within the SERAC1 deficiency spectrum; characteristic ; and autosomal recessive .
1. Infantile, severe MEGD(H)EL syndrome (3-methylglutaconic aciduria with deafness-dystonia, [hepatopathy], encephalopathy, and Leigh-like syndrome):
Source: GeneReviews — "SERAC1 Deficiency"
Differential diagnosis of 3-methylglutaconic aciduria (3-MGA-uria). Increased urinary excretion of the branched-chain organic acid 3-MGA (3-MGA-uria) is a relatively common finding in children investigated for suspected inborn errors of metabolism . Inborn errors of metabolism with 3-MGA-uria as a discriminative feature show a characteristic "syndromal" pattern of signs and symptoms . The exact source of 3-MGA-uria is known only in AUH defect, the rarest type, caused by primary deficiency of the mitochondrial enzyme 3-methylglutaconyl-CoA hydratase resulting in blockage of leucine catabolism. The origin of the increased 3-MGA excretion in all other types is unknown, but mitochondrial dysfunction is thought to be the common denominator . Table 4. Genes of Interest in the Differential Diagnosis of SERAC1 Deficiency
Gene | Disorder | MOI | Features of Differential Diagnosis Disorder |
|---|---|---|---|
ACTB | Dystonia-deafness syndrome 1 (OMIM 607371) |
Genetic testing for SERAC1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome has been reported in the published literature.
No approved treatments are currently available for 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SERAC1 deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 5. Recommended Evaluations Following Initial Diagnosis in Individuals with SERAC1 Deficiency
System/Concern | Evaluation | Comment |
|---|---|---|
Liver dysfunction | Assess liver function | Incl ASAT, ALAT, gamma-GT, serum concentration of bilirubin (total direct), serum concentration of ammonia, clotting tests. Neonatal |
hypoglycemia | Assess blood sugar | — |
Neurologic | Neurologic eval | To assess:; Spasticity; Dystonia; Possible seizures, incl EEG; MRI if not performed previously |
DD/ID (static) | Developmental assessment | To evaluate:; Motor, adaptive, cognitive, speech/language; Need for early intervention/ special education |
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | Incl assessment of:; Gross motor fine motor skills;; Contractures, scoliosis;; Mobility, ADLs, need for adaptive devices;; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills). Excessive drooling |
Source: GeneReviews — "SERAC1 Deficiency"
Medications known to impair mitochondrial function (e.g., valproic acid) should be avoided.
Source: GeneReviews — "SERAC1 Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SERAC1 Deficiency"
View trials for 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome
Table 7.
Recommended Surveillance for Individuals with SERAC1 Deficiency
System/Concern | Evaluation | Frequency
| • Measurement of growth parameters
Eval of nutritional status safety of oral intake
| At each visit
| Monitor for evidence of aspiration respiratory insufficiency.
| • Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, changes in tone, movement disorders.
| • Monitor developmental progress incl possibility of cognitive decline.
Monitor educational needs.
| Physical medicine, OT/PT assessment of scoliosis, contractures, mobility, self-help skills
| Monitor effectiveness of hearing aids possible need for alternative means of communication.
| Monitor vision.
Family/
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination.
Source: GeneReviews — "SERAC1 Deficiency"
Phenotype severity distribution: 5 always present features, 3 very common features, 2 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome.
11 publications have been identified in PubMed for 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Research spans Case Report / Case Series (56%), Diagnostic / Biomarker (11%), and Review / Meta-Analysis (11%).
Singer ES (2026). [PMID: 41778063](https://pubmed.ncbi.nlm.nih.gov/41778063/). *Frontiers in cardiovascular medicine*. [Case Report / Case Series]
Marchante Pita R (2025). [PMID: 40365324](https://pubmed.ncbi.nlm.nih.gov/40365324/). *JIMD reports*. [Case Report / Case Series]
King MA (2025). [PMID: 40033659](https://pubmed.ncbi.nlm.nih.gov/40033659/). *Journal of inherited metabolic disease*. [Basic Science / Preclinical]
DiFalco CR (2025). [PMID: 39787888](https://pubmed.ncbi.nlm.nih.gov/39787888/). *Molecular genetics and metabolism*. [Diagnostic / Biomarker]
Roesch S (2025). [PMID: 40714654](https://pubmed.ncbi.nlm.nih.gov/40714654/). *Molecular genetics and metabolism*. [Epidemiology / Natural History]
Sadek AA (2025). [PMID: 40821445](https://pubmed.ncbi.nlm.nih.gov/40821445/). *Clinical medicine insights. Pediatrics*. [Case Report / Case Series]
Stein B (2025). [PMID: 41458770](https://pubmed.ncbi.nlm.nih.gov/41458770/). *Cureus*. [Case Report / Case Series]
Che M (2024). [PMID: 39309604](https://pubmed.ncbi.nlm.nih.gov/39309604/). *Frontiers in cardiovascular medicine*. [Case Report / Case Series]
Ahmed N (2024). [PMID: 39592976](https://pubmed.ncbi.nlm.nih.gov/39592976/). *BMC anesthesiology*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 21, 2026, 4:52 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
58% never learn to speak. Progressive spasticity | 81% | — |
Dystonia | 81% | — |
Sensorineural hearing loss | 80% | — |
Loss of skills | 75% | — |
Neonatal liver dysfunction | 52% | — |
Neonatal hypoglycemia | 49% | — |
Seizures | 38% | Febrile seizures, myoclonic epilepsy |
Neonatal liver failure | 30% | — |
Optic atrophy | 25% | The following clinical findings of SERAC1 deficiency are based on the combined personal experience of the authors as well as published data . |
Source: GeneReviews — "SERAC1 Deficiency"
AD |
Absent |
AGK | Sengers syndrome (See Mitochondrial DNA Maintenance Defects Overview.) | AR | Present* |
ATAD3A | Harel-Yoon syndrome (OMIM 617183) | ADAR | Present* |
AUH | AUH defect (OMIM 250950) | AR | Present* |
BCAP31 | Deafness, dystonia, cerebral hypomyelination (OMIM 300475) | XL | Absent |
CLPB deficiency | AR | Present* | Cataracts, central hypopnea, DD, ID, movement disorder, neutropenia, (epilepsy1) |
DNAJC19 | DNAJC19 defect (DCMA syndrome) (OMIM 610198) | AR | Present* |
FITM2 | Siddiqi syndrome (OMIM 618635) | AR | Absent |
HTRA2 | MGCA8 (OMIM 617248) | AR | Present* |
MICOS13(C19orf70,QIL1) | Combined oxidative phosphorylation deficiency 37 (OMIM 618329) | AR | Present* |
Costeff syndrome | AR | Present* | Optic atrophy, movement disorder (ataxia or extrapyramidal disorder) SUCLA2 |
SUCLA2 mtDNA depletion syndrome, encephalomyopathic form w/methylmalonic aciduria | AR | May be present | Early-onset dystonia, deafness, severe failure to thrive; Basal ganglia involvement visible on brain MRI in some; Movement disorder, epilepsy, 3-MGA-uria, serum lactate common.; Characteristic metabolite profile: mild in urinary methylma... |
Source: GeneReviews — "SERAC1 Deficiency"
Dysphagia | Gastroenterology/ nutrition/ feeding team eval | Incl eval of aspiration risk nutritional status.; Consider eval for gastric tube placement in patients w/dysphagia /or aspiration risk. Sensorineural |
hearing loss | Complete audiologic exam incl hearing test, BAEP | Perform even if newborn hearing screening was NL. |
Optic atrophy | Ophthalmologic exam by pediatric ophthalmologist | Genetic |
counseling | By genetics professionals1 | To inform affected persons their families re nature, MOI, implications of SERAC1 deficiency to facilitate medical personal decision making Family support resources |
Treatment of Manifestations in Individuals with SERAC1 Deficiency Manifestation/Concern | Treatment | Considerations/Other |
DD/ID | See . | Can be static or progressive cognitive decline |
Spasticity | Orthopedics/ physical medicine rehab/ PT OT incl stretching to help avoid contractures falls | Consider need for positioning mobility devices, disability parking placard. Pharmacologic treatment |
Seizures | Standardized treatment w/ASM by experienced neurologist | Many ASMs may be effective; none has been demonstrated effective specifically for this disorder.; Education of parents/caregivers1 Dysphagia |
Drooling | Botulinum toxin injection in salivary glands, extirpation of salivary glands, /or rerouting of glandular ducts | These measures can improve secondary respiratory problems. |
Hearing loss | Consider hearing aids or cochlear implant in patient w/mild cognitive impairment. | Family/ Community |
AI-curated news mentioning 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome
Updated Jul 21, 2026
FDA approved Casgevy CRISPR gene therapy for children as young as 2 with sickle cell disease on July 1, 2026. Here's what families need to know about this milestone. Approximately 5,500 additional American children are now eligible for this established one-time therapy, according to Vertex Pharmaceuticals, Casgevy's developer. Casgevy also covers transfusion-dependent beta-thalassemia in this new age indication. Sickle cell disease is a lifelong inherited blood disorder that warps red blood cells into stiff, crescent shapes that can block blood flow, starving organs and tissues of oxygen. The world's first CRISPR-based gene therapy has been approved for children as young as two years old, opening the possibility of a single, potentially curative treatment to thousands of American children with sickle cell disease before years of organ damage can narrow what medicine can do for them. Families with children aged 2 and older who have sickle cell disease should speak with their pediatric hematologist about whether Casgevy is appropriate to consider at this stage of their child's disease. Ask specifically which authorized treatment centers perform Casgevy in your region. Treatment is available only at specialized sites, and geographic access remains limited. Contact your child's insurance plan or Medicaid office to ask about coverage. Medicaid coverage for gene therapies varies by state, and some states have developed outcomes-based payment models for high-cost therapies. "With today's decision, pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases," said Karim Mikhail, acting director of the Office of Therapeutic Products at the FDA's Center for Biologics Evaluation and Research, according to the FDA press announcement. Casgevy is a non-viral, ex vivo CRISPR/Cas9 gene-edited cell therapy.