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Any disorder of plasmalogen biosynthesis in which the cause of the disease is a mutation in the AGXT gene.
No HPO annotations are available for this condition.
Primary hyperoxaluria type 1 (PH1) is caused by deficiency of the liver peroxisomal enzyme alanine-glyoxylate aminotransferase (AGT), which catalyzes the conversion of glyoxylate to glycine. When AGT activity is reduced or absent, glyoxylate is converted to oxalate, which cannot be metabolized and must be excreted by the kidneys. Insoluble calcium oxalate crystals form due to high urinary oxalate concentration. Crystal deposition leads to nephrolithiasis (i.e., calcium oxalate kidney stones) in the renal pelvis/ urinary tract and often in kidney parenchyma (nephrocalcinosis). The natural history of untreated PH1 is (1) progressive decline in kidney function because of complications of nephrolithiasis (e.g., urinary obstruction, infection) and nephrocalcinosis, and (2) other organ and tissue damage from calcium oxalate deposition (i.e., "oxalosis"). In the absence of treatment oxalosis progresses leading to death from kidney failure and/or other organ involvement . Table 4. Primary Hyperoxaluria Type 1: Clinical Presentations
Consensus guidelines for the diagnostic approach to individuals with a suspicion of primary hyperoxaluria and management of all types of primary hyperoxaluria have been published . See for a diagnostic algorithm. Suggestive Findings Primary hyperoxaluria type 1 (PH1) should be suspected in a proband of any age with recurrent calcium oxalate stones or nephrocalcinosis, especially if associated with progressive chronic kidney disease (CKD) or a family history of stones and CKD . Typical clinical findings vary by age at presentation. Clinical Findings Infancy (age 12 months) • Impaired kidney function or poor weight gain and/or poor linear growth of undetermined etiology • Nephrocalcinosis. Renal ultrasound examination most commonly reveals diffuse nephrocalcinosis with few if any observable discrete stones. • First kidney stone Childhood/adolescence (ages 1-17 years) • First kidney stone • Multiple or recurring calcium-containing kidney stones • Impairment of kidney function associated with stones or nephrocalcinosis. Nephrocalcinosis has been observed at the time of the first imaging study in 30% of individuals with preserved kidney function . Adulthood (age ≥18 years) • Recurrent nephrolithiasis in which kidney imaging reveals multiple bilateral radiopaque calculi known or suspected to be calcium oxalate, especially if urinary testing is available and confirms hyperoxaluria • Nephrocalcinosis • Reduced kidney function or end-stage kidney disease (ESKD) with a history of kidney stones or nephrocalcinosis Post kidney transplantation. In approximately 10% of individuals with PH1 the diagnosis is made following kidney transplantation when calcium oxalate crystals are found on allograft biopsy performed for early non-function of the transplanted kidney and/or a subsequent increase in serum creatinine concentration . Supportive Laboratory Findings Hyperoxaluria resulting from increased hepatic production of oxalate is the central laboratory feature of PH1 . Preferred testing for assessment of oxalate excretion is based on kidney function . • CKD stages 1 to 3b (i.e., kidney function is preserved). Because most excess oxalate is excreted in the urine and plasma oxalate concentrations are normal to mildly elevated, measurement of urine oxalate is important. • CKD stages 4 and 5 (advanced CKD or the individual is on dialysis). Because less oxalate than expected is excreted in the urine and plasma oxalate concentration is markedly increased, assessment of plasma oxalate concentration is preferred. Table 1. Primary Hyperoxaluria Type 1: Supportive Laboratory Findings
No approved treatments are currently available for alanine glyoxylate aminotransferase deficiency. The disease remains an area of unmet medical need.
Clinical practice recommendations for management of primary hyperoxaluria (PH) have been published . The following recommendations are also based on the authors' experience and participation in the Rare Kidney Stone Consortium PH Registry.
The following evaluations are recommended to establish the extent of disease and needs in an individual diagnosed with primary hyperoxaluria type 1 (PH1):
Individuals with PH1 require lifelong care, the frequency of which is related to kidney function . CKD stages 1 and 2 (measured GFR or estimated GFR [eGFR] 60 mL/min/1.73 m2). The following are required to evaluate/ensure treatment efficacy:
Regular monitoring of kidney function. Serum creatinine and/or cystatin C for determination of eGFR should be performed at least annually and more frequently in children and adolescents and in individuals with changing kidney function or clinically active stone disease.
No clinical trials have been registered for alanine glyoxylate aminotransferase deficiency.
13 publications have been identified in PubMed for alanine glyoxylate aminotransferase deficiency. Research spans Case Report / Case Series (23%), Epidemiology / Natural History (23%), and Diagnostic / Biomarker (15%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 3 | 23% |
Data assembled from 3 of 12 sources · Last updated Sep 19, 2026, 11:07 AM UTC
Common questions about alanine glyoxylate aminotransferase deficiency
Age at Presentation | % of All PH1 | Initial Manifestations |
|---|---|---|
Nephrolithiasis | Nephrocalcinosis | Kidney function |
Infantile onset (age 12 mos) | 10%1 | ± |
Childhood/adolescence (ages 1-17 yrs) | 70% | +++ |
Adulthood (age ≥18 yrs) | 20% | +++ |
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Laboratory Test | Constraints | Findings in PH1 | Comments |
|---|---|---|---|
Urine oxalate, 24-hr collection1 | All individuals where possible | UOx 0.5 mmol/24 hours | Must be corrected to BSA 1.73 m2 in children; At least 2 collections required to confirm abnormality; Less reliable when eGFR 30 mL/min/BSA |
Data for normal values for children age 2 yrs are limited. Urine oxalate:creatinine, spot urine specimen1 | Young children or others in whom 24-hr collection is difficult | UOx normal range for age2 | At least 2 collections to confirm abnormality |
Plasma oxalate concentration | When eGFR 30 mL/min/1.73 m2 | POx 20 is consistent w/PH1.; POx 50 mol/L is strongly suggestive of PH1 3,4 | Plasma samples require special handling.; Results vary by method. |
Available only in specialty labs Kidney stone analysis | When stone is available | 100% calcium oxalate monohydrate | Suggestive of but not specific for PH1 BSA = body surface area; eGFR = estimated glomerular filtration rate; POx = plasma oxalate; UOx = urine oxalate 1. |
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Differential diagnosis of primary hyperoxaluria type 1 (PH1) needs to take into consideration the three known causes of primary hyperoxaluria (type 1, type 2, and type 3; see ) and other monogenic causes of stone diseases while also considering calcium oxalate stone disease of unknown cause (also known as idiopathic calcium oxalate stone disease) and secondary hyperoxaluria. All individuals with hyperoxaluria not attributable to secondary causes or who have CKD with suggestive clinical findings such as nephrolithiasis, nephrocalcinosis, or plasma oxalate concentration higher than expected for the CKD stage should undergo genetic testing for definitive diagnosis.
Primary hyperoxaluria (PH) should be included in the differential diagnosis of any condition that causes calc...
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Biomarker and diagnostic research for alanine glyoxylate aminotransferase deficiency has been reported in the published literature.
Kidney imaging for assessment of number and location of stones and presence of nephrocalcinosis
Baseline 24-hour urine collection with measurement of excretion rates of oxalate, calcium, and citrate, pH, urine volume, and other components of a supersaturation profile to identify specific risk factors for stones
Note: Baseline measurement of 24-hour excretion rates is recommended in nearly all individuals, even those requiring catheter placement for accurate collection. In rare exceptions only a spot urine with concentrations corrected for creatinine content is used .
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Avoid the following:
Intravascular volume depletion. The importance of maintaining dilute urine cannot be overemphasized.
Intake of vitamin C that exceeds the recommended daily allowance
Loop diuretics to maintain dilute urine, as they can lead to hypercalciuria and increase calcium oxalate stone production
High doses of nonsteroidal anti-inflammatory drugs (NSAIDs) or any pharmacologic agent that can compromise kidney function
Large intake of foods high in oxalate (e.g., chocolate, rhubarb, starfruit)
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Several novel therapies are under investigation. Gene editing of AGXT, HAO1, or LDHA holds promise of a durable effect following a single treatment . Such agents could avoid the inconvenience and risk of non-adherence associated with repeated dosing required with RNAi therapeutics. Though most investigations to date are preclinical, the use of CRISPR/Cas9 for glycolate oxidase disruption in PH1 is at the stage of Phase I/II clinical trials (NCT06511349, NCT06839235). Small molecule therapies. Chemical chaperones may have general stabilizing functions, or they may be designed to target proteins with specific pathogenic variants.
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
View trials for alanine glyoxylate aminotransferase deficiency
Regular kidney ultrasound examinations at least annually, or more often as needed to monitor and manage stone-forming activity
Urinalysis and measurements of urine oxalate excretion, urine volume, and calcium oxalate saturation (spot and 24-hour collections) at least annually, more often in individuals with active stones or changes in kidney function
(GFR 60 and 30 mL/min/1.73 m2). Monitor the following at least every six months or more often with any change in clinical status:
Kidney function
Kidney ultrasound for stones and incipient nephrocalcinosis
Urine oxalate and plasma oxalate concentrations
CKD stages 4 and 5 (GFR 30 mL/min/1.73 m2) or a rapid deterioration in function. The following should be performed at regular intervals, including prior to initiation of dialysis and during ongoing dialysis care:
Source: GeneReviews — "Primary Hyperoxaluria Type 1"
Disease patterns and progression
3 |
23% |
Testing and diagnosis research | 2 | 15% |
Laboratory research | 2 | 15% |
New treatment approaches | 2 | 15% |
Research summaries | 1 | 8% |
Arias F (2026). [PMID: 41480893](https://pubmed.ncbi.nlm.nih.gov/41480893/). *J Med Chem*. [Gene Therapy / Novel Therapeutics]
Hoppe B (2025). [PMID: 39810772](https://pubmed.ncbi.nlm.nih.gov/39810772/). *Kidney Int Rep*. [Diagnostic / Biomarker]
Ruta L (2025). [PMID: 40495747](https://pubmed.ncbi.nlm.nih.gov/40495747/). *J Inherit Metab Dis*. [Basic Science / Preclinical]
Zhang HY (2025). [PMID: 41073327](https://pubmed.ncbi.nlm.nih.gov/41073327/). *Zhonghua Yan Ke Za Zhi*. [Case Report / Case Series]
Hashmi JA (2025). [PMID: 39746862](https://pubmed.ncbi.nlm.nih.gov/39746862/). *Nephrology (Carlton)*. [Diagnostic / Biomarker]
Wanders RJA (2025). [PMID: 39582099](https://pubmed.ncbi.nlm.nih.gov/39582099/). *J Inherit Metab Dis*. [Review / Meta-Analysis]
Wang X (2025). [PMID: 40814648](https://pubmed.ncbi.nlm.nih.gov/40814648/). *Kidney Int Rep*. [Epidemiology / Natural History]
Jiang Y (2025). [PMID: 39385468](https://pubmed.ncbi.nlm.nih.gov/39385468/). *Mol Ther*. [Gene Therapy / Novel Therapeutics]
Sayed B (2025). [PMID: 41152954](https://pubmed.ncbi.nlm.nih.gov/41152954/). *Orphanet J Rare Dis*. [Epidemiology / Natural History]
Aaboudech TY (2024). [PMID: 39464227](https://pubmed.ncbi.nlm.nih.gov/39464227/). *Oxf Med Case Reports*. [Case Report / Case Series]