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Features include always present findings: Delayed speech and language development, Global developmental delay, Delayed gross motor development, and Reduced social responsiveness; and very common findings: Delayed fine motor development, Intellectual disability, and Autistic behavior. 38 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 11 | Seizure, Delayed fine motor development, Depression |
Head and neck | 5 | High palate, Macrocephaly, Facial hypotonia |
Eyes | 3 | Strabismus, Nystagmus, Ptosis |
Muscles | 3 | Generalized hypotonia, Facial hypotonia, Delayed gross motor development |
Heart and blood vessels | 2 | Ventricular septal defect, Enlarged heart (cardiomegaly) |
Bones and joints | 2 | Joint hypermobility, Accelerated skeletal maturation |
Digestive system | 1 | Feeding difficulties in infancy |
Age of onset: infancy.
TET3-related Beck-Fahrner syndrome (TET3-BEFAHRS) is a condition within the spectrum of mendelian disorders of the epigenetic machinery (MDEMs) , also called chromatin-modifying disorders or chromatinopathies. The most common phenotypic manifestations of TET3-BEFAHRS and other MDEMs are intellectual disability/ developmental delay typically affecting both motor and language skills. Similar to other MDEMs , individuals with TET3-BEFAHRS have neurologic, behavioral, and psychiatric features, with some individuals exhibiting growth abnormalities as well [, , , ]. Additional tissue-diverse manifestations affecting the eyes, hearing, and musculoskeletal and gastrointestinal systems have also been observed . See for a mnemonic for the most common features of TET3-BEFAHRS. To date, 28 individuals from 16 families have been identified with pathogenic variants in TET3 [, , , , ]. Four affected individuals had copy number variants in addition to pathogenic TET3 variants, and one affected individual had biallelic variants in a gene that causes an autosomal recessive disorder that does not fully explain her phenotype . It remains unclear if these additional genetic variants are contributing to the phenotypes in these reported individuals. Table 2. TET3-Related Beck-Fahrner Syndrome: Frequency of Select Features
Feature | Proportion of Persons w/Feature | Comment |
|---|---|---|
TET3 function has not been fully characterized.
Beck-Fahrner syndrome is caused by mutations in the TET3 gene on chromosome 2.
No consensus clinical diagnostic criteria for TET3-related Beck-Fahrner syndrome (TET3-BEFAHRS) have been published.
TET3-BEFAHRS should be considered in individuals with the following clinical findings.
Clinical findings
Mild-to-severe developmental delay or intellectual disability
AND
Source: GeneReviews — "TET3-Related Beck-Fahrner Syndrome"
Although there is significant phenotypic overlap with other mendelian disorders of the epigenetic machinery (also called chromatin-modifying disorders or chromatinopathies; see ), the clinical presentation of TET3-related Beck-Fahrner syndrome (TET3-BEFAHRS) is typically nonspecific global developmental delay and, consequently, all disorders associated with intellectual disability without other distinctive findings should be considered in the differential diagnosis. See OMIM Autosomal Dominant, Autosomal Recessive, Nonsyndromic X-Linked, and Syndromic X-Linked Intellectual Developmental Disorder Phenotypic Series.
Table 3.
Selected Chromatin-Modifying Disorders of Interest in the Differential Diagnosis of TET3-Related Beck-Fahrner Syndrome
Gene | Disorder | MOI | Clinical Characteristics
...
Source: GeneReviews — "TET3-Related Beck-Fahrner Syndrome"
Genetic testing for TET3 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for Beck-Fahrner syndrome has been reported in the published literature.
No approved treatments are currently available for Beck-Fahrner syndrome. The disease remains an area of unmet medical need.
No clinical practice guidelines for TET3-related Beck-Fahrner syndrome (TET3-BEFAHRS) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with TET3-BEFAHRS, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 4. TET3-Related Beck-Fahrner Syndrome: Recommended Evaluations
System/Concern | Evaluation | Comment |
|---|---|---|
Constitutional | Measurement of growth parameters, incl head circumference | To assess for tall or short stature, macrocephaly, /or microcephaly |
Neurologic | Neurologic eval | To assess for tone any movement disorders; To incl brain MRI, as clinically indicated; Consider EEG if seizures are a concern. |
Hypotonia | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Mobility, activities of daily living, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) |
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education Neurobehavioral/ |
Psychiatric |
Source: GeneReviews — "TET3-Related Beck-Fahrner Syndrome"
View trials for Beck-Fahrner syndrome
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended.
Table 6.
TET3-Related Beck-Fahrner Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency
| • Measurement of growth parameters, incl weight, length/height, head circumference
Eval of nutritional status safety of oral intake
| At each visit
| Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, changes in tone, movement disorders.
| Monitor developmental progress educational needs.
Neurobehavioral/
| Assessment for anxiety, ADHD, ASD, aggression, self-injury
| Assess for signs symptoms of constipation.
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning).
| Physical medicine, OT/PT assessment of mobility, self-help skills; clinical eval for joint hypermobility
Clinical eval for kyphosis /or scoliosis
Eyes | Complete ophthalmology eval | At least annually
| Audiology eval
OT = occupational therapy; PT = physical therapy
Source: GeneReviews — "TET3-Related Beck-Fahrner Syndrome"
Phenotype severity distribution: 4 always present features, 3 very common features, 13 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for Beck-Fahrner syndrome.
4 publications have been identified in PubMed for Beck-Fahrner syndrome. Research spans Basic Science / Preclinical (50%), Diagnostic / Biomarker (25%), and Case Report / Case Series (25%).
Xuan X (2025). [PMID: 41451500](https://pubmed.ncbi.nlm.nih.gov/41451500/). *Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics*. [Case Report / Case Series]
Man A (2025). [PMID: 39324309](https://pubmed.ncbi.nlm.nih.gov/39324309/). *American journal of medical genetics. Part A*. [Diagnostic / Biomarker]
Mei L (2025). [PMID: 40259394](https://pubmed.ncbi.nlm.nih.gov/40259394/). *Hum Genomics*. [Basic Science / Preclinical]
Foti MRS (2024). [PMID: 39273623](https://pubmed.ncbi.nlm.nih.gov/39273623/). *International journal of molecular sciences*. [Basic Science / Preclinical]
Data assembled from 8 of 12 sources · Last updated Sep 18, 2026, 6:56 PM UTC
Patient Advocacy Groups (PAGs) provide support, resources, and community for patients and caregivers.
Online Mendelian Inheritance in Man
European rare disease database
Common questions about Beck-Fahrner syndrome
Developmental delay /or intellectual disability |
25/26 |
One or more of the following: speech/ gross motor/ fine motor delay |
Common facial characteristics | 21/23 | See Facial features following this table. |
Social communication disorder | 11/13 | — |
Autistic features/ autism spectrum disorder | 9/14 | Some affected persons may not have had a formal eval for autism. |
Anxiety | 8/11 | — |
Hypotonia | 13/23 | Information about hypotonia is often lacking in affected adults. |
Hearing loss | 7/10 | Predominantly conductive |
Musculoskeletal findings | 9/19 | Joint hypermobility, hip dysplasia, scoliosis/kyphosis |
Attention-deficit/hyperactivity disorder | 6/13 | — |
Growth abnormalities1 | 9/19 | 6/19 had overgrowth 3/19 had undergrowth. |
Gastrointestinal manifestations | 8/18 | Feeding difficulties /or constipation |
Ophthalmologic findings | 9/22 | Refractive errors, strabismus, nystagmus |
Seizure disorder | 9/24 | A variety of different types have been reported. |
Other abnormal movements | 7/23 | Incl tics, myoclonic jerks, dysmetria, posturing, dystonia |
Congenital heart defects | 5/19 | Incl valve abnormalities or complex congenital heart disease 1. Developmental delay (DD)/ intellectual disability (ID). The most common finding in individuals with TET3-BEFAHRS is DD and/or ID, ranging from mild to severe. |
Source: GeneReviews — "TET3-Related Beck-Fahrner Syndrome"
For persons age 12 mos: screening for concerns incl sleep disturbances, ADHD, anxiety, social communication disorder, /or findings suggestive of ASD |
Musculoskeletal | Assessment for joint hypermobility, scoliosis, pes planus, hip dysplasia | Consider referral to orthopedist. Gastrointestinal/ |
Feeding | Gastroenterology/ nutrition/ feeding team eval | Consider eval for nasogastric or gastrostomy tube in those w/persistent feeding issues. |
Eyes | Ophthalmologic eval | To assess for strabismus, nystagmus, refractive errors |
Ears/Hearing | Audiology eval | To assess for hearing loss Assess for chronic otitis media ear anomalies. |
Cardiovascular | Echocardiogram | To assess for congenital heart defects, incl valve anomalies Consider EKG. |
Genitourinary | Physical exam to assess for genitourinary anomalies in males | Consider referral to urologist. Consider abdominal or kidney ultrasound. |
Genetic counseling | By genetics professionals1 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of TET3-BEFAHRS to facilitate medical personal decision making Family support resources |
TET3-Related Beck-Fahrner Syndrome: Treatment of Manifestations Manifestation/Concern | Treatment | Considerations/Other |
Epilepsy | Standardized treatment w/ASM by experienced neurologist | Many ASMs may be effective; none has been demonstrated effective specifically for this disorder.; Education of parents/caregivers1 Abnormalities in tone/ |
Movement disorders | Orthopedics/ physical medicine rehab/ PT OT | Consider need for positioning mobility devices, disability parking placard. Feeding difficulties |
Constipation | Stool softeners, prokinetics, osmotic agents, or laxatives as needed | Developmental delay/ Intellectual disability |
AI-curated news mentioning Beck-Fahrner syndrome
Updated Jul 8, 2026
A new treatment for children aged 2 or older with sickle cell disease has been approved by the U.S. Food & Drug Administration. In a press release on Wednesday, the FDA announced it had approved Casgevy, the first gene therapy for children with sickle cell disease. (NewsNation) — A new treatment for children aged 2 or older with sickle cell disease has been approved by the Food & Drug Administration (FDA). In a Wednesday news release, the FDA announced it had approved Casgevy, the first gene therapy for children with the disease. “Casgevy is a gene therapy consisting of the patient’s own (autologous) hematopoietic (blood) stem cells, administered as a one-time single dose for intravenous infusion,” the release noted. “Pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases,” Karim Mikhail, the acting director of the Center for Biologics Evaluation and Research, wrote. “These disorders carry a heavy burden for children and their families, affecting growth, development, and long-term health in profound ways,” Megha Kaushal, acting deputy director of the Office of Therapeutic Products in CBER, said in the release.