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Any bone marrow failure syndrome in which the cause of the disease is a mutation in the DNAJC21 gene.
Features include always present findings: Hyperechogenic pancreas, Low red blood cell count (anemia), Decreased circulating vitamin E concentration, and Intrauterine growth retardation and others; and very common findings: Bone marrow hypocellularity. 56 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 8 | Recurrent infections, Low red blood cell count (anemia), Persistence of hemoglobin F |
Skin | 4 | Eczematoid dermatitis, Nail dystrophy, Thickened, rough skin (hyperkeratosis) |
Growth and development | 3 | Short stature, Failure to thrive, Intrauterine growth retardation |
Bones and joints | 3 | Bone marrow hypocellularity, Joint hypermobility, Low bone density (reduced bone mineral density) |
Digestive system | 3 | Feeding difficulties, Exocrine pancreatic insufficiency, Pancreatic steatosis |
Eyes | 2 | Retinal dystrophy, Retinal dysplasia |
Pregnancy and birth | 1 | Congenital hip dislocation |
Ears | 1 | Hearing loss (hearing impairment) |
Head and neck | 1 | Microcephaly |
Brain and nerves | 1 | Global developmental delay |
Shwachman-Diamond syndrome (SDS) is characterized by exocrine pancreatic dysfunction with malabsorption, malnutrition, and growth failure; hematologic abnormalities with single- or multilineage cytopenias and susceptibility to myelodysplastic syndrome (MDS) and acute myelogenous leukemia (AML); and bone abnormalities. To date, more than 500 individuals have been identified with biallelic pathogenic variants in DNAJC21, EFL1, or SBDS or a heterozygous pathogenic variant in SRP54. The following description of the phenotypic features associated with this condition is based on these reports .
Table 2.
Shwachman-Diamond Syndrome: Frequency of Select Features
Feature | % of Persons w/Feature
Exocrine pancreatic dysfunction | 90%
Cytopenia(s) | 95%
Myelodysplastic syndrome | 10%
Source: GeneReviews — "Shwachman-Diamond Syndrome"
DNAJC21 encodes DnaJ heat shock protein family (Hsp40) member C21 (531 aa). May act as a co-chaperone for HSP70. May play a role in ribosomal RNA (rRNA) biogenesis, possibly in the maturation of the 60S subunit. Binds the precursor 45S rRNA Highest expression in Testis (39.7 TPM) and Cervix Ectocervix (28.1 TPM).
Bone marrow failure syndrome 3 is caused by mutations in the DNAJC21 gene on chromosome 5.
DNAJC21 is classified as a druggable target with score 0.0.
No genotype-phenotype correlations have been observed for any of the genes associated with SDS .
Source: GeneReviews — "Shwachman-Diamond Syndrome"
No consensus clinical diagnostic criteria for Shwachman-Diamond syndrome (SDS) have been published.
SDS should be suspected in individuals with any combination of the following clinical findings .
Exocrine pancreatic dysfunction
Low serum concentrations of the pancreatic enzymes trypsinogen and/or isoamylase for age. Note: Measurement of trypsinogen concentration should be used in children age 3 years, and measurement of isoamylase concentration should be used in children age 3 years .
Low levels of fecal elastase
Evidence of pancreatic lipomatosis on imaging. Note: Pancreatic imaging can be normal early in the disease .
Abnormal fecal fat balance study of a 72-hour stool collection (with exclusion of intestinal mucosal disease or cholestatic liver disease)
Source: GeneReviews — "Shwachman-Diamond Syndrome"
Features of Shwachman-Diamond syndrome (SDS) (e.g., poor growth and transient neutropenia) may have multiple causes in young children . Table 3. Genes of Interest in the Differential Diagnosis of Shwachman-Diamond Syndrome
Gene(s) | Disorder | MOI1 | Clinical Features of Disorder |
|---|---|---|---|
Cystic fibrosis | AR | Often presents w/both upper-respiratory infections exocrine pancreatic dysfunction | sweat chloride values; No primary bone marrow failure 16 genes incl:1DKC1RTEL1TERCTERTTINF2 |
Dyskeratosis congenita |
Genetic testing for DNAJC21 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for bone marrow failure syndrome 3 has been reported in the published literature.
No approved treatments are currently available for bone marrow failure syndrome 3. The disease remains an area of unmet medical need.
Clinical practice guidelines for Shwachman-Diamond syndrome (SDS) have been published . Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SDS, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 4. Shwachman-Diamond Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment |
|---|---|---|
Skeletal manifestations | Skeletal survey w/radiographs of hips lower limbs | Other radiographs as needed Bone densitometry |
Liver disease | Measurement of serum aminotransferase concentrations | — |
Developmental delay/ Neurobehavioral manifestations | Assessment of developmental milestones w/neuropsychological eval | Endocrine manifestations |
Genetic counseling | By genetics professionals1 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of SDS to facilitate medical personal decision making Family support |
resources | By clinicians, wider care team, family support organizations |
Source: GeneReviews — "Shwachman-Diamond Syndrome"
Prolonged use of cytokine and hematopoietic growth factors such as granulocyte-colony stimulation factor is cautioned against in view of their potential contribution to leukemic transformation . Some drugs (e.g., cyclophosphamide and busulfan) used in standard hematopoietic stem cell transplantation (HSCT) preparative regimens may not be suitable because of possible cardiac toxicity [, , , ].
Source: GeneReviews — "Shwachman-Diamond Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Shwachman-Diamond Syndrome"
View trials for bone marrow failure syndrome 3
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations – given the intermittent nature of some features of SDS and the evolution of the phenotype over time – the evaluations in are recommended [, , , ]. Table 6. Shwachman-Diamond Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Hematologic abnormalities | CBC w/white blood cell differential platelet count | At least every 3-6 mos; More frequently if peripheral blood counts are changing or infections are recurrent debilitating Bone marrow exam |
Skeletal manifestations | Monitor for orthopedic complications. | During the most rapid growth stages Radiographs of hips knees |
Liver disease | Assessment of serum aminotransferase levels | At least annually |
Developmental delay/ Neurobehavioral manifestations | Developmental assessment | Every 6 mos from birth to age 6 yrs Neuropsychological screening |
Skin | Clinical exam for skin manifestations | At each visit Dental/oral health |
Source: GeneReviews — "Shwachman-Diamond Syndrome"
Phenotype severity distribution: 5 always present features, 1 very common feature, 9 common features.
No clinical trials have been registered for bone marrow failure syndrome 3.
204 publications have been identified in PubMed for bone marrow failure syndrome 3. Research spans Epidemiology / Natural History (23%), Clinical Trial Publication (21%), and Basic Science / Preclinical (19%).
Research Type | Count | % of Total |
|---|---|---|
Disease patterns and progression | 40 | 23% |
Clinical study results | 36 | 21% |
Laboratory research | 32 | 19% |
Research summaries | 30 | 17% |
Patient case studies | 14 | 8% |
Testing and diagnosis research | 11 | 6% |
New treatment approaches | 7 | 4% |
Other research | 2 | 1% |
Beckman RA (2026). [PMID: 41814545](https://pubmed.ncbi.nlm.nih.gov/41814545/). *Stem Cells Transl Med*. [Review / Meta-Analysis]
van Bergen T (2026). [PMID: 41056520](https://pubmed.ncbi.nlm.nih.gov/41056520/). *Blood Adv*. [Basic Science / Preclinical]
Cao Q (2026). [PMID: 41945727](https://pubmed.ncbi.nlm.nih.gov/41945727/). *Clin Lab*. [Clinical Trial Publication]
Modi D (2026). [PMID: 41052403](https://pubmed.ncbi.nlm.nih.gov/41052403/). *Blood Adv*. [Clinical Trial Publication]
Liu Q (2026). [PMID: 41296017](https://pubmed.ncbi.nlm.nih.gov/41296017/). *Blood Adv*. [Epidemiology / Natural History]
Abacar K (2026). [PMID: 40693392](https://pubmed.ncbi.nlm.nih.gov/40693392/). *Arthritis Rheumatol*. [Clinical Trial Publication]
Souza-Neto F (2026). [PMID: 42018138](https://pubmed.ncbi.nlm.nih.gov/42018138/). *JACC Basic Transl Sci*. [Basic Science / Preclinical]
Hakkarainen M (2026). [PMID: 41628318](https://pubmed.ncbi.nlm.nih.gov/41628318/). *Blood Adv*. [Clinical Trial Publication]
Lecornec N (2026). [PMID: 41498485](https://pubmed.ncbi.nlm.nih.gov/41498485/). *Am J Hematol*. [Epidemiology / Natural History]
Franke M (2026). [PMID: 41035407](https://pubmed.ncbi.nlm.nih.gov/41035407/). *Haematologica*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 1:03 PM UTC
Online Mendelian Inheritance in Man
Bone marrow failure |
Abnormally shortened telomere length; Variable cellularity of bone marrow w/ precursors; No primary exocrine pancreatic dysfunction |
ELANE | ELANE-related neutropenia (incl congenital neutropenia cyclic neutropenia) | AD | Neutropenia |
Fanconi anemia | ARADXL3 | Bone marrow failure | Progressive pancytopenia w/positive chromosome breakage studies; Variable cellularity of bone marrow w/ precursors; No primary exocrine pancreatic dysfunction |
HAX1 | Kostmann congenital neutropenia (OMIM 610738) | AR | Neutropenia |
mtDNA deletion | Pearson syndrome (See Mitochondrial DNA Deletion Syndromes.) | mt | Exocrine pancreatic dysfunction bone marrow dysfunction |
Diamond-Blackfan anemia | ADXL4 | Bone marrow failure | Progressive macrocytic anemia w/reticulocytopenia; Normal cellularity bone marrow w/markedly or absent erythroid precursors; No primary exocrine pancreatic dysfunction RMRP |
Cartilage-hair hypoplasia | AR | Skeletal dysplasia | Short at birth, w/abnormal long-bone growth; incidence of scoliosis, abnormal pubertal growth spurt, global dysfunction of skeletal growth (axial appendicular); Gastrointestinal features due to complications of infection (vs exocrine pancreatic insufficiency in SDS) |
SPINK1 | SPINK1-related severe infantile isolated exocrine pancreatic insufficiency5 | AR | Exocrine pancreatic dysfunction |
UBR1 | Johanson-Blizzard syndrome (OMIM 243800) | AR | Exocrine pancreatic dysfunction |
Source: GeneReviews — "Shwachman-Diamond Syndrome"
Shwachman-Diamond Syndrome: Treatment of Manifestations Manifestation/Concern | Treatment | Considerations/Other |
Exocrine pancreatic insufficiency | Oral pancreatic enzymes | Dose based on assessment of pancreatic function nutritional status Supplementation w/fat-soluble vitamins (A, D, E, K) |
Hematologic abnormalities | Blood /or platelet transfusions as needed for anemia thrombocytopenia | Prophylactic antibiotics G-CSF can be considered w/caution may be helpful when interventions such as complex dental procedures or orthopedic surgery are being considered . |