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Branchio-oculo-facial syndrome (BOFS) is characterized by low birth weight and growth retardation, bilateral branchial clefts that may be hemangiomatous, sometimes with linear skin lesions behind the ears ('burn-like' lesions), congenital strabismus, obstructed nasolacrimal ducts, a broad nasal bridge with a flattened nasal tip, a protruding upper lip with an unusually broad and prominent philtrum, and full mouth.
Features include very common findings: Hearing loss (hearing impairment); and common findings: Retinal coloboma, Postnatal growth retardation, Premature graying of hair, and Dimple chin and others. 76 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Head and neck | 6 | Cleft palate, Microcephaly, Cleft of chin |
Eyes | 5 | Strabismus, Retinal coloboma, Cataract |
Brain and nerves | 4 | Mild intellectual disability, Seizure, Hypernasal speech |
Arms and legs | 3 | Preaxial hand polydactyly, Hypoplastic fingernail, Clinodactyly of the 5th finger |
Ears | 3 | Hearing loss (hearing impairment), Inner ear hearing loss (sensorineural hearing impairment), Conductive hearing impairment |
Bones and joints | 2 | Excessive inward curvature of the lower spine (hyperlordosis), Excessive outward curvature of the upper spine (kyphosis) |
Growth and development | 2 | Postnatal growth retardation, Intrauterine growth retardation |
Muscles | 2 | Dermal atrophy, Elbow flexion contracture |
Kidneys and urinary system | 2 | Renal cyst, Renal agenesis |
Digestive system | 1 | Gastroesophageal reflux |
Skin | 1 | Atypical scarring of skin |
Most individuals with branchiooculofacial syndrome (BOFS) can be diagnosed in infancy on the basis of their clinical features. Females and males are affected equally. Although the facial features are generally recognizable, some individuals may have subtle differences [Authors, personal observation].
Branchial (cutaneous) defects occur in a cervical (90%) or infra- or supra-auricular (60%) location.
Defects vary from barely perceptible thin skin or hair patch to erythematous "hemangiomatous" lesions to large weeping erosions.
The mildest defects may be unrecognized and in rare cases heal completely spontaneously. There may be a small residual sinus or tract that may appear to "weep," revealing the patency.
Ocular anomalies include the following:
Source: GeneReviews — "Branchiooculofacial Syndrome"
TFAP2A function has not been fully characterized.
Branchiooculofacial syndrome is associated with mutations in the TFAP2A gene on chromosome 6.
No clear genotype-phenotype correlation exists. Significant inter- and intrafamilial variability have been observed with the same pathogenic variants . Missense, frameshift, and splicing variants along with more complex rearrangements throughout the gene result in similar phenotypes. The majority of individuals with a deletion involving TFAP2A appear to have an abnormally prominent philtrum that may be on the spectrum of microform cleft lip . described an infant and mother with a 593-kb deletion including TFAP2A and five additional genes. Neither is reported to have any type of cleft or abnormal philtrum. Otherwise, the marked inter- and intrafamilial variability appear similar to that observed with intragenic pathogenic variants.
Source: GeneReviews — "Branchiooculofacial Syndrome"
BOFS has shown almost complete penetrance. Careful examination of individuals identified in a family with BOFS with a TFAP2A pathogenic variant is necessary to reveal subtle findings including premature graying (individuals may have dyed their hair), faint hair on the neck, or heterochromia of the irides.
Source: GeneReviews — "Branchiooculofacial Syndrome"
There are no formal diagnostic guidelines for branchiooculofacial syndrome (BOFS) developed by consensus panels, algorithms using a hierarchy of clinical findings, or evidence-based test standards. Diagnostic criteria have been proposed (see Table I in ).
BOFS should be suspected in probands with findings in two or three of the following categories. Branchial (cutaneous) defects. Cervical or infra- or supra-auricular skin defects:
Source: GeneReviews — "Branchiooculofacial Syndrome"
The branchiooculofacial syndrome phenotype is distinctive and can typically be differentiated on a clinical basis from disorders with overlapping features . Table 2. Disorders of Interest in the Differential Diagnosis of Branchiooculofacial Syndrome
Gene(s)/ Genetic Mechanism | Disorder | MOI | Features of This Disorder |
|---|---|---|---|
22q11.2 deletion syndrome | AD | Eye abnormalities; Ear abnormalities; Branchial abnormalities; Renal abnormalities; Orofacial cleft | Cardiac defects common; No BOFS facial features |
CHD7 |
Genetic testing for TFAP2A is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for branchiooculofacial syndrome. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs of an individual diagnosed with branchiooculofacial syndrome (BOFS), the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 3. Branchiooculofacial Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment |
|---|---|---|
Branchial defects | Exam of skin defects by pediatric plastic surgeon | To delineate extent of lesion(s), determine if there is a sinus, , most importantly, determine if thymic remnant could be present |
Eyes | Complete eye exam by pediatric ophthalmologist | To assess for visual limitations, strabismus, nasolacrimal duct obstruction Referral of those w/anophthalmia /or severe microphthalmia to support services for visually impaired |
Cleft lip/palate | Formal eval of cleft lip/palate other possible facial abnormalities | By cleft lip/palate team, which often incl clinical geneticist, pediatric plastic surgeon, ENT, audiologist, speech-language therapist, dental orthodontic specialist Hearing |
Kidney | Renal ultrasonography w/referral to nephrologist if renal abnormalities are identified | — |
Dental | Referral for dental assessment for any dental issues | If not done as part of cleft assessment Neurodevelopment/ Behavior |
Cardiac | Echocardiogram in those w/murmur or cardiac symptoms | — |
Genetic counseling | By genetics professionals2 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of BOFS to facilitate medical personal decision making Family support resources |
Branchiooculofacial Syndrome: Treatment of Manifestations Manifestation/Concern | Treatment | Considerations/Other Branchial defects |
Ophthalmic manifestations | Management per pediatric ophthalmologist | Obstruction from nasolacrimal duct stenosis or atresia must be relieved affected persons monitored for restenosis.; Severe microphthalmia or anophthalmia may be managed by inserting a conformer into the eye socket to encourage its growth. |
Renal manifestations | Standard treatment per nephrologist/urologist | — |
Dental manifestations | Standard treatment per dentist/orthodontist | Neurodevelopment/ Behavior |
Source: GeneReviews — "Branchiooculofacial Syndrome"
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Source: GeneReviews — "Branchiooculofacial Syndrome"
View trials for branchiooculofacial syndrome
To monitor existing manifestations and the individual's response to supportive care, the evaluations summarized in are recommended. Table 5. Branchiooculofacial Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Eyes/Vision | Ophthalmology exam vision assessment | As recommended by ophthalmologist |
Hearing | Audiology eval | As recommended by ENT/audiologist |
Renal manifestations | Assess for recurrent urinary tract infections suggestive of vesicoureteral reflux. | At each visit Dental |
Behavior/Psychiatric | Developmental behavioral assessment | Annually or as needed Monitor for signs of low self-esteem other psychologic issues. |
Source: GeneReviews — "Branchiooculofacial Syndrome"
Phenotype severity distribution: 1 very common feature, 8 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for branchiooculofacial syndrome.
4 publications have been identified in PubMed for branchiooculofacial syndrome. Kisho has analyzed 3 by research type. Research spans Review / Meta-Analysis (33%), Case Report / Case Series (33%), and Basic Science / Preclinical (33%).
Zhao J (2025). [PMID: 40697990](https://pubmed.ncbi.nlm.nih.gov/40697990/). *Genes & diseases*. [Basic Science / Preclinical]
Umapathy N (2024). [PMID: 39411586](https://pubmed.ncbi.nlm.nih.gov/39411586/). *Cureus*. [Case Report / Case Series]
Li K (2024). [PMID: 39217487](https://pubmed.ncbi.nlm.nih.gov/39217487/). *Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Oct 3, 2026, 8:12 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
AD |
Eye abnormalities; Ear abnormalities; Orofacial cleft |
SOX10 | Waardenburg syndrome (See Waardenburg Syndrome Type I.) | ADAR | Premature graying of hair; Telecanthus; Hearing loss |
SIX1 | Branchiootorenal spectrum disorder1 | AD | Ear abnormalities; Branchial abnormalities; Renal abnormalities |
TP63 | Ectrodactyly, ectodermal dysplasia, cleft lip/palate syndrome 3 (See TP63-Related Disorders.) | AD | Orofacial cleft; Ectodermal abnormalities |
Source: GeneReviews — "Branchiooculofacial Syndrome"