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Childhood-onset hypophosphatasia is a rare, mildform of hypophosphatasia characterized by onset after six months of age and widely variable clinical features from low bone mineral density for age, to unexplained fractures,skeletal deformities,and rickets with short stature and waddling gait.
Features include always present findings: Bowdler spurs. 18 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 2 | Seizure, Waddling gait |
Head and neck |
ALPL encodes alkaline phosphatase, biomineralization associated (524 aa). Alkaline phosphatase that metabolizes various phosphate compounds and plays a key role in skeletal mineralization and adaptive thermogenesis. Highest expression in Whole Blood (597.6 TPM) and Lung (87.2 TPM).
Childhood hypophosphatasia is associated with mutations in the ALPL gene on chromosome 1.
ALPL is classified as a druggable target (Druggable Genome and Enzyme categories) with score 0.9.
Clinical diagnostic criteria for hypophosphatasia have been published .
Hypophosphatasia should be suspected in probands with the following clinical, laboratory, and radiographic features:
Clinical features
Clinical features of infantile rickets: growth failure, craniotabes, craniosynostosis, blue sclerae, flail chest, costochondral enlargement ("rachitic rosary"), scoliosis, thickening of wrists, knees, and ankles, bowing of the legs, lax ligaments, and hypotonia
No approved treatments are currently available for childhood hypophosphatasia. The disease remains an area of unmet medical need.
Medical management guidelines for the treatment of hypophosphatasia with asfotase alfa have been published . In addition, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with hypophosphatasia, the evaluations summarized in and (if not performed as part of the evaluation that led to the diagnosis) are recommended.
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations in are recommended.
Table 11.
Hypophosphatasia: Recommended Surveillance
System/Concern | Evaluation | Frequency
| ALP activity | • In infants: at onset of treatment, ages 3, 6, 12 mos, then every 6 mos
1 clinical trial registered, 1 recruiting. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
98 publications have been identified in PubMed for childhood hypophosphatasia. Research spans Case Report / Case Series (34%), Review / Meta-Analysis (19%), and Basic Science / Preclinical (14%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 33 | 34% |
Data assembled from 8 of 12 sources · Last updated Sep 19, 2026, 9:15 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Craniosynostosis |
Bones and joints | 1 | Skin dimple over apex of long bone angulation |
Skin | 1 | Skin dimple over apex of long bone angulation |
Growth and development | 1 | Short stature |
Muscles | 1 | Myopathy |
Lab test results | 1 | Decreased circulating alkaline phosphatase activity |
Hypophosphatasia is characterized by defective mineralization of bone and/or teeth and reduced serum alkaline phosphatase (ALP). Biallelic ALPL pathogenic variants often result in severe hypophosphatasia that can result in stillbirth without mineralized bone, while heterozygous ALPL pathogenic variants are more likely to manifest as modest, mild, or even asymptomatic disease. Regardless of the number of ALPL pathogenic variants, many individuals with hypophosphatasia suffer from pain, disability, and reduced quality of life . Intrafamilial clinical variability is common, particularly when some affected family members have a heterozygous ALPL pathogenic variant and other affected family members have biallelic pathogenic variants.
Source: GeneReviews — "Hypophosphatasia"
Most individuals with hypophosphatasia have unique ALPL variants, preventing the identification of genotype-phenotype correlations. However, site-directed mutagenesis experiments have identified variants producing significant residual enzymatic activity and variants with a dominant-negative effect . Less severe phenotypes have been observed in individuals with biallelic loss-of-function variants that allow residual enzymatic activity or heterozygous variants exhibiting a dominant-negative effect . Clinical features of individuals with reported variants, as well as residual enzyme activity for some of those variants, can be found in the ALPL Variants Database.
Source: GeneReviews — "Hypophosphatasia"
While some argue that penetrance is complete, reduced penetrance is possible in autosomal dominant hypophosphatasia due to ALPL variants manifesting a dominant-negative effect.
Source: GeneReviews — "Hypophosphatasia"
Premature loss of deciduous teeth beginning with the incisors (unusually and characteristically, the dental root remains attached to the lost tooth); dental caries and early loss or extraction of adult teeth (See .)
Vitamin B6 (pyridoxine)-responsive seizures
Bone pain
Laboratory features
Source: GeneReviews — "Hypophosphatasia"
The differential diagnosis of hypophosphatasia depends on the age at which the diagnosis is considered. Clinical features that help differentiate hypophosphatasia from other conditions include bone hypomineralization prenatally and immediately postnatally; elevated serum concentrations of calcium and phosphorus postnatally; and persistently low serum alkaline phosphatase (ALP) enzyme activity.
Early prenatal ultrasound examination may lead to a consideration of COL1A1/2 osteogenesis imperfecta (OI) type II, campomelic dysplasia, and chondrodysplasias with defects in bone mineralization, as well as hypophosphatasia . Experienced sonographers usually have little difficulty in distinguishing among these disorders.
Source: GeneReviews — "Hypophosphatasia"
Genetic testing for ALPL is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for childhood hypophosphatasia has been reported in the published literature.
Table 7.
Perinatal Hypophosphatasia: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
Calcium
homeostasis | • Serum calcium, phosphorus, magnesium
Referral to endocrinologist for mgmt of bone health
| To identify those at risk of apnea /or seizures due to hypercalcemia
Pulmonary
insufficiency | Clinical assessment of pulmonary function | To assist in prognosis distinguishing between severe benign perinatal types
Orthopedic
manifestations | • Orthopedic eval
Skeletal survey incl radiographs of skull to assess for craniosynostosis
| If head shape is abnormal, consider 3D CT scan to further evaluate craniosynostosis.
| Eval by neurologist for suspected seizures |
| Eval by craniofacial specialists /or neurosurgeon for those w/craniosynostosis |
| • Blood urea nitrogen serum creatinine concentration
Referral to nephrologist
|
Family support
Source: GeneReviews — "Hypophosphatasia"
Bisphosphonates are relatively contraindicated in hypophosphatasia. Although adverse outcomes have not been identified in children with infantile hypophosphatasia , theoretic concern has long been raised based on the structure of bisphosphonates. The phosphate motifs in bisphosphonates have a similar conformation to inorganic pyrophosphate (PPi), the natural substrate of alkaline phosphatase, tissue-nonspecific isozyme (TNSALP), the enzyme encoded by ALPL; thus, treatment with bisphosphonates is thought to be analogous to "adding fuel to the fire." In adults with hypophosphatasia and osteomalacia treated with bisphosphonates, lateral subtrochanteric femoral pseudofractures have been described . As the prevalence of adult hypophosphatasia is not known and many undiagnosed adults undoubtedly are treated with bisphosphonates, the frequency of this unusual complication is not known. Denosumab is a potent inhibitor of osteoclast-mediated bone resorption, which subsequently reduces the coupling signals necessary for osteoblast activity . In the FREEDOM trial, denosumab treatment led to a significant reduction in bone-specific alkaline phosphatase (ALP) levels, decreasing by approximately 40% to 60% between months one and 12 of treatment (NCT00089791).
Source: GeneReviews — "Hypophosphatasia"
Efzimfotase alfa. Proprietary modifications to ALXN1850 (efzimfotase alfa) include enhanced TNSALP catalytic activity, alternate Fc (fragment crystallizable) regions, and bone-targeting variations. In one study adults received a single intravenous dose (15 mg, 45 mg, or 90 mg) followed by three weekly subcutaneous injections. The primary outcomes were safety and tolerability, while secondary outcomes assessed pharmacokinetics and dynamics. Treatment-emergent adverse events occurred in 80% of individuals, with 67% deemed treatment related. Phase III trials are currently under way . Osteoblast enhancement by anti-sclerostin antibodies. Teriparatide enhances osteoblast production of TNSALP, and sclerostin inhibits osteoblast differentiation.
Source: GeneReviews — "Hypophosphatasia"
1 trial found
In children/adults: at onset of treatment, 2 weeks, 3, 6, 12 mos after initiating treatment, then annually
Plasma PLP
Urine PEA
Serum ionized calcium (or serum calcium adjusted for albumin concentration)
Serum phosphorus
| • In infants: at onset of treatment, ages 1, 3, 6, 12 mos, then annually
In children/adults: at onset of treatment, 3 mos after initiating treatment, then annually
Serum PTH | At onset of treatment, then as needed based on calcium metabolism
25-hydroxyvitamin D | • In infants: at onset of treatment, ages 1, 3, 6, 12 mos, then annually once normal levels reached
In children/adults: at onset of treatment, 3, 6, 12 mos after initiating treatment, then annually once normal levels reached
Complete blood count
Liver function (bilirubin, ALT, AST)
| • In infants: at onset of treatment, ages 3, 6, 9, 12 mos, then annually
In children/adults: at onset of treatment, 6 mos after initiating treatment, then annually
Creatinine, BUN
Urine calcium-to-creatinine ratio to assess for nephrocalcinosis
| • In infants: at onset of treatment, then every 3 mos; monitor closely during acute phase until stable
Source: GeneReviews — "Hypophosphatasia"
Phenotype severity distribution: 1 always present feature.
Estimated prevalence: Unknown (Unknown prevalence).
Research summaries |
19 |
19% |
Laboratory research | 14 | 14% |
Clinical study results | 12 | 12% |
Testing and diagnosis research | 10 | 10% |
Disease patterns and progression | 8 | 8% |
New treatment approaches | 2 | 2% |
Montero-Lopez R (2026). [PMID: 41042986](https://pubmed.ncbi.nlm.nih.gov/41042986/). *Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research*. [Basic Science / Preclinical]
Al-Saoudi E (2026). [PMID: 41877284](https://pubmed.ncbi.nlm.nih.gov/41877284/). *J Med Case Rep*. [Case Report / Case Series]
Goto K (2026). [PMID: 42229052](https://pubmed.ncbi.nlm.nih.gov/42229052/). *J Oral Biosci*. [Basic Science / Preclinical]
Nozoe A (2026). [PMID: 41831016](https://pubmed.ncbi.nlm.nih.gov/41831016/). *J Bone Miner Metab*. [Basic Science / Preclinical]
Luo JJ (2026). [PMID: 41834214](https://pubmed.ncbi.nlm.nih.gov/41834214/). *Zhonghua er ke za zhi = Chinese journal of pediatrics*. [Review / Meta-Analysis]
Millán JL (2026). [PMID: 41055578](https://pubmed.ncbi.nlm.nih.gov/41055578/). *Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research*. [Review / Meta-Analysis]
Lipiński P (2026). [PMID: 41528835](https://pubmed.ncbi.nlm.nih.gov/41528835/). *Advances in clinical and experimental medicine : official organ Wroclaw Medical University*. [Review / Meta-Analysis]
Windels O (2026). [PMID: 42032047](https://pubmed.ncbi.nlm.nih.gov/42032047/). *Osteoporos Int*. [Case Report / Case Series]
Hao L (2026). [PMID: 41993131](https://pubmed.ncbi.nlm.nih.gov/41993131/). *Hum Mutat*. [Case Report / Case Series]
Kumar S (2026). [PMID: 41558912](https://pubmed.ncbi.nlm.nih.gov/41558912/). *Pathology*. [Clinical Trial Publication]