Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
3q13 microdeletion syndrome is a rare chromosomal anomaly syndrome resulting from a partial deletion of the long arm of chromosome 3. Phenotype can be highly variable, but it is primarily characterized by significant developmental delay, postnatal growth above the mean, muscular hypotonia and distinctive facial features (such as broad and prominent forehead, hypertelorism, epicantic folds, anti-mongloid slanted eyes, ptosis, short philtrum, protruding lips with a full lower lip, high arched palate). Abnormal hypoplastic male genitalia and skeletal abnormalities are frequently present.
Features include always present findings: Short philtrum; and very common findings: Low muscle tone (hypotonia), Delayed speech and language development, and Global developmental delay. 29 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 4 | Seizure, Enlarged brain ventricles (ventriculomegaly), Delayed speech and language development |
Biomarker and diagnostic research for chromosome 3q13.31 deletion syndrome has been reported in the published literature.
Phenotype severity distribution: 1 always present feature, 3 very common features, 11 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for chromosome 3q13.31 deletion syndrome.
2 publications have been identified in PubMed for chromosome 3q13.31 deletion syndrome. Research spans Diagnostic / Biomarker (50%) and Review / Meta-Analysis (50%).
Xue H (2025). [PMID: 40595133](https://pubmed.ncbi.nlm.nih.gov/40595133/). *Scientific reports*. [Diagnostic / Biomarker]
Sinopole KW (2024). [PMID: 39595156](https://pubmed.ncbi.nlm.nih.gov/39595156/). *Biomedicines*. [Review / Meta-Analysis]
Data assembled from 5 of 12 sources · Last updated Sep 20, 2026, 7:58 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about chromosome 3q13.31 deletion syndrome
Eyes |
2 |
Strabismus, Ptosis |
Muscles | 1 | Low muscle tone (hypotonia) |
Head and neck | 1 | High palate |
Bones and joints | 1 | Excessive outward curvature of the upper spine (kyphosis) |