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Any combined oxidative phosphorylation deficiency in which the cause of the disease is a mutation in the FARS2 gene.
Features include always present findings: Seizure, Cerebral cortical atrophy, Shrinkage of the cerebellum (cerebellar atrophy), and Elevated brain lactate level by MRS and others; and common findings: Increased CSF lactate and Increased hepatic glycogen content. 30 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 13 | Seizure, Cerebral cortical atrophy, Elevated brain lactate level by MRS |
Muscles | 6 | Cerebral cortical atrophy, Shrinkage of the cerebellum (cerebellar atrophy), Low muscle tone (hypotonia) |
Digestive system | 4 | Copper accumulation in liver, Feeding difficulties, Elevated hepatic iron concentration |
Blood and immune system | 2 | Low red blood cell count (anemia), Low platelet count (thrombocytopenia) |
Ears | 1 | Hearing loss (hearing impairment) |
Head and neck | 1 | Microcephaly |
Lab test results | 1 | Increased circulating lactate concentration |
Eyes | 1 | Visual impairment |
Growth and development | 1 | Growth delay |
The spectrum of FARS2 deficiency ranges between two phenotypes: infantile-onset disease characterized by epileptic encephalopathy with lactic acidosis and poor prognosis (70% of affected individuals) and later-onset spastic paraplegia (30% of affected individuals) associated with less severe neurologic manifestations and longer survival. The findings in the 37 individuals with FARS2 deficiency reported to date are summarized in [, , , , , , , , , , , ].
Table 2.
Clinical, Neuroimaging, and Metabolic Findings in FARS2 Deficiency
Infantile Onset | Later Onset
| 19 | 6
| 26 | 11
| Birth-6 mos (median 35 days; mean 62 days) | 6 mos-5 yrs (median 2 yrs; mean 2.1 yrs)
| Alive | 8/23 (age range: 4 mos-3.5 yrs; median 1.6 yrs; mean 1.8 yrs)...
Source: GeneReviews — "FARS2 Deficiency"
FARS2 encodes phenylalanyl-tRNA synthetase 2, mitochondrial (451 aa). Is responsible for the charging of tRNA(Phe) with phenylalanine in mitochondrial translation. Highest expression in Thyroid (17.6 TPM) and Testis (15.4 TPM).
Combined oxidative phosphorylation defect type 14 is associated with mutations in the FARS2 gene on chromosome 6.
FARS2 is classified as a druggable target (Druggable Genome and Enzyme categories) with score 0.0.
It is difficult to establish a genotype-phenotype correlation in FARS2 deficiency given the limited number of affected individuals and the complication of compound heterozygosity in such studies. All 14 individuals homozygous for the most commonly reported variant, , had the infantile-onset phenotype (see Table 9). Although the number of affected individuals reported to date is small, the infantile-onset and later-onset phenotypes have not shared the same genotypes.
Source: GeneReviews — "FARS2 Deficiency"
FARS2 deficiency comprises a spectrum of disease severity that ranges between two phenotypes: infantile-onset epileptic mitochondrial encephalopathy and less severe, later-onset spastic paraplegia. Formal diagnostic criteria for FARS2 deficiency have not been established.
The two phenotypes known to date to be associated with FARS2 deficiency are infantile-onset epileptic mitochondrial encephalopathy and later-onset spastic paraplegia. FARS2-related infantile-onset epileptic mitochondrial encephalopathy should be considered in children from birth to age six months with the following clinical, laboratory, and imaging findings.
Clinical findings
Seizures
Developmental delay
Truncal hypotonia
Laboratory findings
Source: GeneReviews — "FARS2 Deficiency"
Phenotypic features associated with FARS2 pathogenic variants are not sufficient to diagnose FARS2 deficiency. For children with a phenotype consistent with infantile-onset epileptic mitochondrial encephalopathy, all genes known to be associated with early-infantile epileptic encephalopathy (65 have been identified; see OMIM Phenotypic Series) should be included in the differential diagnosis. For individuals with later-onset spastic paraplegia, all genes known to be associated with complicated spastic paraplegia (see Hereditary Spastic Paraplegia Overview) should be included in the differential diagnosis.
Source: GeneReviews — "FARS2 Deficiency"
Genetic testing for FARS2 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for combined oxidative phosphorylation defect type 14. The disease remains an area of unmet medical need.
To establish the extent of disease and needs in an individual diagnosed with FARS2 deficiency, the evaluations summarized in and (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
Recommended Evaluations Following Initial Diagnosis in Individuals with FARS2 Deficiency: Infantile-Onset Epileptic Encephalopathy
System/Concern | Evaluation | Comment
| Assess height, weight, head circumference. | FTT is a significant issue for all patients.
| Assess for seizures. | Seizures are usually focal but other forms are possible. EEG usually shows multifocal epileptic discharges.
Assess for myoclonus. | Eye facial twitching; myoclonic jerks of extremities
Assess for hypotonia. | Axial hypotonia could be assoc w/appendicular hypertonia.
| Developmental assessment | Incl assessment of age-appropriate motor, speech/language, cognitive skills
| Assess visual acuity. | Central visual impairment (i.e., w/o retinal or optic nerve changes) is common.
| Physical medicine rehab/ PT OT eval | Assess tone spasticity.
Gastrointestinal/
| Gastroenterology/ nutrition/ feeding team eval | Assess swallowing, feeding, nutritional status to determine safety of oral vs gastrostomy feeding.
Assess for evidence of hepatic involvement. | Liver enzymes hepatic ultrasound exam
| Assess airway, pulmonary function, secretion mgmt. | Sleep study to assess for apnea
Source: GeneReviews — "FARS2 Deficiency"
Valproic acid can induce liver failure in persons with mitochondrial diseases . Some individuals with FARS2 deficiency received valproic acid and showed no evidence of liver dysfunction or worsening of existing liver disease . Given the limited number of affected individuals reported to date, no general recommendation can be made.
Source: GeneReviews — "FARS2 Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "FARS2 Deficiency"
View trials for combined oxidative phosphorylation defect type 14
Individuals with FARS2 deficiency should be evaluated periodically by an interdisciplinary team that includes a neurologist, clinical geneticist, physiatrist, and developmental specialist to assess disease progression ( and ), to maximize ambulation and communication skills, and to reduce other manifestations. Table 7. Recommended Surveillance for Individuals with FARS2 Deficiency: Infantile-Onset Epileptic Encephalopathy
System/Concern | Evaluation | Frequency |
|---|---|---|
Feeding | Assess nutritional status feeding w/attention to poor weight gain, choking/gagging during feeds, feeding refusal not otherwise explained. | At each visit Respiratory |
Recommended Surveillance for Individuals with FARS2 Deficiency: Later-Onset Spastic Paraplegia System/Concern | Evaluation | Frequency |
Musculoskeletal | PT/OT eval; assessment for contractures, scoliosis, foot deformities; consider need for positioning /or mobility devices. | Each visit |
Neurologic | Monitor those w/seizures as clinically indicated. | If concerns for new seizure activity or progression of seizures; seizures are usually brief resolve over time Assess for new manifestations such as myoclonus, tremor, bradykinesia, dystonia, dysarthria. |
Source: GeneReviews — "FARS2 Deficiency"
Phenotype severity distribution: 18 always present features, 2 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for combined oxidative phosphorylation defect type 14.
1 publication has been identified in PubMed for combined oxidative phosphorylation defect type 14. Research spans Review / Meta-Analysis (100%).
Calakos N (2025). [PMID: 39467044](https://pubmed.ncbi.nlm.nih.gov/39467044/). *Mov Disord*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 18, 2026, 5:20 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about combined oxidative phosphorylation defect type 14