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Congenital short bowel syndrome is a rare intestinal disorder of neonates of unknown etiology. Patients are born with a short small bowel (less than 75 cm in length) that compromises proper intestinal absorption and leads chronic diarrhea, vomiting and failure to thrive.
No HPO annotations are available for this condition.
The FLNA-related otopalatodigital (FLNA-OPD) spectrum disorders, characterized primarily by skeletal dysplasia, include the following allelic conditions: otopalatodigital syndrome type 1 (FLNA-OPD1), otopalatodigital syndrome type 2 (FLNA-OPD2), frontometaphyseal dysplasia type 1 (FLNA-FMD), Melnick-Needles syndrome (FLNA-MNS), and terminal osseous dysplasia (FLNA-TOD). To date, more than 500 individuals with an FLNA-OPD spectrum disorder have been identified [, , , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. Table 4. FLNA-Related Otopalatodigital Spectrum Disorders: Frequency of Select Features
The FLNA-related otopalatodigital (FLNA-OPD) spectrum disorders, a heterogeneous group of disorders characterized primarily by a skeletal dysplasia of variable severity, include the following:
Otopalatodigital syndrome type 1 (FLNA-OPD1)
Otopalatodigital syndrome type 2 (FLNA-OPD2)
Frontometaphyseal dysplasia type 1 (FLNA-FMD)
No approved treatments are currently available for congenital short bowel syndrome. The disease remains an area of unmet medical need.
No clinical practice guidelines for FLNA-related otopalatodigital (FLNA-OPD) spectrum disorders have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with an FLNA-OPD spectrum disorder, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 8. FLNA-Related Otopalatodigital Spectrum Disorders: Recommended Surveillance
1 clinical trial registered, 1 recruiting. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
9 publications have been identified in PubMed for congenital short bowel syndrome. Research spans Case Report / Case Series (56%), Basic Science / Preclinical (22%), and Other (11%).
Yu CJ (2026). [PMID: 41867273](https://pubmed.ncbi.nlm.nih.gov/41867273/). *Biochem Biophys Rep*. [Other]
Liu J (2025). [PMID: 41555926](https://pubmed.ncbi.nlm.nih.gov/41555926/). *Front Genet*. [Case Report / Case Series]
Ma LL (2025). [PMID: 41178880](https://pubmed.ncbi.nlm.nih.gov/41178880/). *World J Gastrointest Surg*. [Case Report / Case Series]
Yang L (2025). [PMID: 41341909](https://pubmed.ncbi.nlm.nih.gov/41341909/). *Intractable Rare Dis Res*. [Review / Meta-Analysis]
Chen S (2025). [PMID: 39763071](https://pubmed.ncbi.nlm.nih.gov/39763071/). *Clin Genet*. [Basic Science / Preclinical]
Data assembled from 5 of 12 sources · Last updated Sep 19, 2026, 3:01 PM UTC
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European rare disease database
Genetic and Rare Diseases Info Center
Disorder | Feature | % of Persons w/Feature |
|---|---|---|
(in males) | Digital anomalies | 100% Deafness |
(in males) | Thoracic hypoplasia | 100% Cleft palate |
(in males) | Supraorbital hyperostosis | 100% Urinary tract obstruction |
(in females) | Micrognathia | 100% Limb bowing |
(in females) | Digital fibromata | 100% Erosive changes on radiographs |
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
Terminal osseous dysplasia (FLNA-TOD)
For the purposes of this GeneReview, the terms "male" and "female" are narrowly defined as the individual's biological sex at birth as it determines clinical care . No consensus clinical diagnostic criteria for FLNA-OPD spectrum disorders have been published.
FLNA-OPD spectrum disorders should be suspected in an individual with the following clinical features , radiographic feat...
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
Skeletal dysplasias of interest in the differential diagnosis of FLNA-related otopalatodigital (FLNA-OPD) spectrum disorders are listed in . Table 5. Genes of Interest in the Differential Diagnosis of FLNA-Related Otopalatodigital Spectrum Disorders
Gene | Disorder | MOI | Features of Disorder |
|---|---|---|---|
Osteopathia striata w/cranial sclerosis | XL | In males: similar skeletal dysplasia to that in FLNA-OPD2; Occasionally, extraskeletal anomalies similar to those in FLNA-OPD2 | In females: striations of long bones, macrocephaly, deafness |
FLNB | Larsen syndrome (LS) atelosteogenesis type III (AOIII) (See FLNB Disorders.) | AD | Similar facial features to those in FLNA-OPD1 FLNA-FMD; Cleft palate, hearing loss, spatulate fingers toes |
MAP3K7 | MAP3K7-FMD (OMIM 617137) | AD | Very similar to FLNA-FMD |
NOTCH2 | Serpentine fibula-polycystic kidney disease (Hajdu-Cheney syndrome) (OMIM 102500) | AD | Bowing of long bones, esp fibula |
SH3PXD2B | Frank-ter Haar syndrome (OMIM 249420) | AR | Skeletal dysplasia similar to but considerably milder than FLNA-MNS |
SKI | Shprintzen-Goldberg syndrome (SGS) | AD | Skeletal dysplasia similar to FLNA-MNS FLNA-FMD (e.g., tall, square-shaped vertebrae; bowed tibiae; occasionally, fusion of upper cervical vertebrae) |
TAB2 | -FMD1 | AD | Very similar to FLNA-FMD |
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
Table 6.
FLNA-Related Otopalatodigital Spectrum Disorders: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| • Clinical exam of extremities, joints, spine
Complete skeletal survey w/scoliosis series if indicated
| To evaluate for contractures, joint subluxations/dislocations, scoliosis
| Clinical exam for facial or skull growth asymmetry | To evaluate for craniosynostosis
Audiology eval | To evaluate for conduction sensorineural hearing loss
Clinical exam of palate referral to ENT as necessary | To evaluate for cleft palate subglottic stenosis
| Referral to pulmonologist if indicated | To evaluate for respiratory complications assoc w/thoracic hypoplasia
| Echocardiogram | To evaluate for septal defects, right ventricular outflow tract obstructive lesions, cardiomyopathy
| Dental eval | To evaluate for hypodontia, oligodontia
| Renal tract ultrasound exam | To...
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
1 trial found
Evaluation |
|---|
Frequency |
|---|
Craniosynostosis | Head size shape should be monitored. | At clinical eval during infancy |
Apnea | Assess for signs/symptoms of sleep apnea. | Annually Polysomnography studies |
Deafness | Audiology eval; sensorineural component can be progressive. | Annually |
Oligohypodontia | Dental eval | Every 6-12 mos beginning w/eruption of primary dentition DXA = dual-energy x-ray absorptiometry; FLNA-FMD = FLNA-related frontometaphyseal dysplasia; FLNA-MNS = FLNA-related Melnick-Needles syndrome |
Source: GeneReviews — "FLNA-Related Otopalatodigital Spectrum Disorders"
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
Knight SE (2025). [PMID: 40804705](https://pubmed.ncbi.nlm.nih.gov/40804705/). *Pediatr Transplant*. [Case Report / Case Series]
D'Amato I (2025). [PMID: 40860336](https://pubmed.ncbi.nlm.nih.gov/40860336/). *Front Genet*. [Case Report / Case Series]
Yu CJ (2025). [PMID: 41141622](https://pubmed.ncbi.nlm.nih.gov/41141622/). *Biochem Biophys Rep*. [Basic Science / Preclinical]
Nhan VT (2024). [PMID: 39173431](https://pubmed.ncbi.nlm.nih.gov/39173431/). *Int J Surg Case Rep*. [Case Report / Case Series]
AI-curated news mentioning congenital short bowel syndrome
Updated Jun 1, 2026
Expanding in the metabolic space, Eli Lilly has struck a back-loaded licensing deal with South Korea’s Hanmi Pharm for a mid-stage GLP-2 agonist being trialed for short bowel syndrome.
A position paper from the Society for Paediatric Gastroenterology and Nutrition discusses the use of teduglutide in treating short bowel syndrome in infants, children, and adolescents. This guidance aims to inform clinical practices regarding chronic intestinal failure management.