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An X-linked inherited form of Cornelia De Lange syndrome caused by mutations in the SMC1A gene mapped to chromosome Xp11.22. Patients have a milder form of the syndrome compared to patients with the NIPBL gene mutation.
Features include sometimes findings: Seizure and Thickened heart muscle (hypertrophic cardiomyopathy). 37 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 6 | Poor speech, Seizure, Difficulty with thinking and memory (cognitive impairment) |
Growth and development | 3 | Short stature, Postnatal growth retardation, Intrauterine growth retardation |
Head and neck | 3 | Thin upper lip vermilion, High palate, Microcephaly |
Arms and legs | 2 | Short foot, Small hand |
Digestive system | 1 | Gastroesophageal reflux |
Heart and blood vessels | 1 | Thickened heart muscle (hypertrophic cardiomyopathy) |
Eyes | 1 | Ptosis |
While classic Cornelia de Lange syndrome (CdLS) was formally characterized more than 70 years ago and well delineated clinically , the identification of the molecular genetic basis of CdLS has led to the recognition of affected individuals who have milder or atypical features. Therefore, this condition encompasses a spectrum of findings from mild to severe . Those with a milder phenotype, which is less striking clinically than the classic form of CdLS, may represent the majority of individuals with CdLS . Table 2. Features of Cornelia de Lange Syndrome
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Synophrys | 98%1 | In individuals w/classic features |
Feeding difficulties | 95% |
SMC1A function has not been fully characterized.
Cornelia de Lange syndrome 2 is associated with mutations in the SMC1A gene on chromosome X.
NIPBL. Individuals with pathogenic missense variants and in-frame deletions in NIPBL have been found to have less severe growth deficiency, milder intellectual disability, and fewer structural anomalies compared to those with pathogenic loss-of-function NIPBL variants. SMC1A. Pathogenic variants that cause a CdLS phenotype are typically missense and can result in a range of severity. Of note, loss of function pathogenic variants in SMC1A cause an early-infantile epileptic encephalopathy (OMIM 301044; see ).
Source: GeneReviews — "Cornelia de Lange Syndrome"
Cornelia de Lange syndrome (CdLS) constitutes a clinical spectrum, with some individuals having milder features and others displaying more severe, classic features. An international consensus statement has defined both cardinal and suggestive features, as well as a scoring system to define classic and non-classic CdLS to assist with clinical genetic testing decisions .
Cornelia de Lange syndrome (CdLS) should be suspected in individuals with the following clinical and radiographic features.
Clinical findings
Source: GeneReviews — "Cornelia de Lange Syndrome"
Phenotypic overlap with CdLS may be observed in monogenic disorders , chromosome abnormalities, and fetal alcohol syndrome. Table 4. Genes of Interest in the Differential Diagnosis of Cornelia de Lange Syndrome
Gene | Disorder | MOI | Features of Differential Disorder |
|---|---|---|---|
CHOPS syndrome | AD | Cognitive impairment, heart defects, short stature, skeletal dysplasia | Coarse facial features, obesity, pulmonary involvement (features that are not typical for CdLS)1 ANKRD112 |
KBG syndrome |
Genetic testing for SMC1A is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for Cornelia de Lange syndrome 2 has been reported in the published literature.
No approved treatments are currently available for Cornelia de Lange syndrome 2. The disease remains an area of unmet medical need.
Clinical management guidelines for Cornelia de Lange syndrome have been published (full text). Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with Cornelia de Lange syndrome, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 5. Recommended Evaluations Following Initial Diagnosis in Individuals with Cornelia de Lange Syndrome
System/Concern | Evaluation | Comment |
|---|---|---|
Constitutional | Measurement of growth parameters | CdLS-specific growth charts are available.1 |
Neurologic | Neurologic eval | Consider EEG if seizures are a concern. |
Development | Developmental assessment | Motor, adaptive, cognitive, speech-language eval. Speech therapy is highly recommended to optimize communication skills should be implemented in 1st 18 mos of life.; Eval for early intervention/ special education |
Behavioral | Neuropsychiatric eval | For persons age 12 mos: screen for concerns incl sleep disturbances, ADHD, anxiety, /or findings suggestive of ASD. |
Musculoskeletal | Consider radiographs of upper extremities |
Source: GeneReviews — "Cornelia de Lange Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Cornelia de Lange Syndrome"
View trials for Cornelia de Lange syndrome 2
Table 7.
Recommended Surveillance for Individuals with Cornelia de Lange Syndrome
System/Concern | Evaluation | Frequency
| • Measure growth parameters.
Evaluate nutritional status safety of oral intake.
| At each visit
| Monitor for signs symptoms of GERD.
| Monitor for evidence of aspiration, respiratory insufficiency.
| Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures or signs of autonomic dysfunction.
| Monitor developmental progress educational needs.
| Behavioral assessment for anxiety, attention, aggressive or self-injurious behavior
| Physical medicine, OT/PT assessment of mobility, self-help skills
Miscellaneous/
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination.
Eyes | Ophthalmologic eval | At least annually
| Dental eval cleaning
| Audiology eval | At least annually in childhood adolescence
GERD = gastroesophageal reflux disease; OT = occupational therapy; PT = physical therapy
Source: GeneReviews — "Cornelia de Lange Syndrome"
No clinical trials have been registered for Cornelia de Lange syndrome 2.
18 publications have been identified in PubMed for Cornelia de Lange syndrome 2. Research spans Case Report / Case Series (44%), Review / Meta-Analysis (17%), and Epidemiology / Natural History (17%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 8 | 44% |
Research summaries | 3 | 17% |
Disease patterns and progression | 3 | 17% |
Laboratory research | 2 | 11% |
Testing and diagnosis research | 1 | 6% |
Clinical study results | 1 | 6% |
Baumeister H (2026). [PMID: 41443080](https://pubmed.ncbi.nlm.nih.gov/41443080/). *EBioMedicine*. [Clinical Trial Publication]
Valientes SDA (2026). [PMID: 41751561](https://pubmed.ncbi.nlm.nih.gov/41751561/). *Genes (Basel)*. [Case Report / Case Series]
Koga CMT (2026). [PMID: 42119528](https://pubmed.ncbi.nlm.nih.gov/42119528/). *Arq Neuropsiquiatr*. [Case Report / Case Series]
Mir A (2026). [PMID: 42069659](https://pubmed.ncbi.nlm.nih.gov/42069659/). *J Med Case Rep*. [Case Report / Case Series]
Strom NI (2025). [PMID: 40360802](https://pubmed.ncbi.nlm.nih.gov/40360802/). *Nat Genet*. [Review / Meta-Analysis]
Paulis M (2025). [PMID: 40541047](https://pubmed.ncbi.nlm.nih.gov/40541047/). *Stem Cell Res*. [Case Report / Case Series]
Strom NI (2025). [PMID: 38712091](https://pubmed.ncbi.nlm.nih.gov/38712091/). *medRxiv*. [Epidemiology / Natural History]
Çetinkaya D (2025). [PMID: 41230206](https://pubmed.ncbi.nlm.nih.gov/41230206/). *Mol Syndromol*. [Basic Science / Preclinical]
De Luisa A (2025). [PMID: 39542017](https://pubmed.ncbi.nlm.nih.gov/39542017/). *Neuropediatrics*. [Case Report / Case Series]
Yang Y (2025). [PMID: 39831465](https://pubmed.ncbi.nlm.nih.gov/39831465/). *Mol Genet Genomic Med*. [Review / Meta-Analysis]
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 6:55 PM UTC
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Common questions about Cornelia de Lange syndrome 2
Growth failure | 95% | May be noted prenatally |
Intellectual disability | 95% | Typically severe to profound in those w/classic CdLS |
Small hands feet | 90% | — |
Microbrachycephaly | 90% | — |
Long eyelashes | 90% | — |
Thin upper vermilion border of lip | 90% | — |
Downturned corners of mouth | 90% | — |
Dental problems | 90% | Delayed secondary tooth eruption, small or absent teeth, malposition, overcrowding, caries due to GERD, periodontal disease, bruxism |
Hypertrichosis | 80% | Involving the face, ears, back, arms |
Hearing loss | 80% | 40% have profound SNHL, although hearing loss may improve over time. |
Micrognathia | 80% | In those w/classic features |
Radial head underdevelopment | 79% | — |
Gastroesophageal reflux disease | 75% | — |
Clinodactyly | 70% | — |
Nasolacrimal duct obstruction | 70% | — |
Ptosis | 60% | — |
Cutis marmorata | 60% | — |
Self-injurious behavior | 56% | — |
Sleep difficulties | 50% | — |
Mandibular spurs | 42% | — |
Scoliosis | 33% | — |
High arched palate w/clefting | 30% | — |
Congenital heart defects | 30% | Most commonly pulmonic or peripheral pulmonic stenosis, VSD, ASD |
Seizures | 25% | — |
Oligodactyly | 25% | ASD = atrial septal defect; GERD = gastroesophageal disease; SNHL = sensorineural hearing loss; VSD = ventricular septal defect Growth. Prenatal-onset growth failure is present in a majority of individuals with CdLS. |
Source: GeneReviews — "Cornelia de Lange Syndrome"
DD/ID, short stature, thick eyebrows synophrys, anteverted nares3 |
ID is typically milder; macrodontia, few congenital defects |
ASXL1 | Bohring-Opitz syndrome (BOS) | AD | DD/ID; prenatal postnatal growth restriction, microcephaly, hypertrichosis, small feet, facial resemblance w/CdLS (especially infants) |
EP300 Rubinstein-Taybi Syndrome (RSTS) | AD | DD/ID, small stature, hypertrichosis, full eyebrows, long lashes, micrognathia, malrotation5 | Prominent nose broad thumbs (both less common in EP300-RSTS than in CREBBP-RSTS)6 |
TAF1 | Intellectual disability syndrome (OMIM 300966) | XL | DD/ID, long philtrum, anteverted nares, microcephaly, hearing loss7 |
TAF6 | Alazami-Yuan syndrome (OMIM 617126) | AR | Short stature, microcephaly, clinodactyly, hirsutism, DD/ID, facial dysmorphism w/long philtrum, thin arched eyebrows, synophrys8 |
Source: GeneReviews — "Cornelia de Lange Syndrome"
Feeding | Gastroenterology/ nutrition/ feeding team eval | Consider upper GI series to evaluate for malrotation.; Consider endoscopy, pH probe for severe or refractory GERD.; Eval of aspiration risk; Eval of nutritional status; Consider eval for gastrostomy tube placement in those w/dysphagia /or aspiration risk. |
Eyes | Ophthalmologic eval | Incl eval for nasolacrimal duct patency, ptosis, assessment of visual acuity, dilated fundus exam, measurement of intraocular pressure |
Hearing | Audiologic eval2 | Assess for hearing loss. |
ENT/Mouth | Clinical assessment for cleft palate | Examination of palate by both inspection palpation at diagnosis; In case of symptoms of a (submucous) cleft palate, referral for specialist assessment is indicated. |
Dental | Dental assessment | In infancy in those w/cleft palate or after tooth eruption |
Cardiovascular | Echocardiogram | Assessment for congenital heart defects |
Genitourinary | Assessment for cryptorchidism /or hypospadias in males | Consider referral to urologist. Kidney ultrasound |
Hematologic | Complete blood count | If signs of anemia, bruising, /or bleeding |
Immunologic | Complete blood count immune profile3 | If recurrent infections are present, consider referral to immunologist. Miscellaneous/ |
Other | Consultation w/clinical geneticist /or genetic counselor | To incl genetic counseling Family support resources |
Treatment of Manifestations in Individuals with Cornelia de Lange Syndrome Manifestation/Concern | Treatment | Considerations/Other Poor weight gain/ |
Failure to thrive | Feeding therapy; gastrostomy tube placement may be required for persistent feeding issues. | Low threshold for clinical feeding eval /or radiographic swallowing study if clinical signs or symptoms of dysphagia; Referral to a nutritionist may be considered. Gastroesophageal reflux disease |
Malrotation | Surgical correction | — |
Epilepsy | Standard treatment w/ASM by experienced neurologist | Many ASMs may be effective; none has been demonstrated effective specifically for CdLS.; Education of parents/caregivers1 DD/ID |
AI-curated news mentioning Cornelia de Lange syndrome 2
Updated May 13, 2026
A recent study highlights unusual head and neck vascular patterns in two patients with Cornelia de Lange syndrome, providing insights into associated cerebrovascular anomalies. This case-based analysis may inform future research and clinical approaches to this rare condition.
A case report identifies a de novo start-loss variant in the NIPBL gene linked to mild type 1 Cornelia de Lange syndrome in an Iranian family. This finding contributes to the understanding of genetic factors in this rare condition.