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Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the KCNT1 gene.
Features include always present findings: Low muscle tone (hypotonia), Brain atrophy, Generalized-onset motor seizure, and Interictal epileptiform activity and others; and common findings: Delayed CNS myelination, Cerebral cortical atrophy, Generalized hypotonia, and Thin corpus callosum and others. 31 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 22 | Clonus, Focal clonic seizure, Cerebral cortical atrophy |
Muscles | 5 | Cerebral cortical atrophy, Low muscle tone (hypotonia), Generalized hypotonia |
Heart and blood vessels | 1 | Focal autonomic seizure with palpitations/tachycardia/bradycardia/asystole |
Head and neck | 1 | Microcephaly |
KCNT1-related epilepsy encompasses a range of epilepsy syndromes. The most common phenotypes reported in individuals with KCNT1-related epilepsy are epilepsy of infancy with migrating focal seizures (EIMFS) and autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE).
EIMFS is an early-infantile epileptic encephalopathy characterized by seizures beginning in the first six months of life with associated developmental plateau or regression. The seizures are primarily focal motor, variably with secondary generalization, but also include tonic, clonic, tonic-clonic, myoclonic, and epileptic spasms . Autonomic manifestations (e.g., perioral cyanosis, flushing, apnea) are common. Seizures progress to become nearly continuous by age six to nine months.
Source: GeneReviews — "KCNT1-Related Epilepsy"
KCNT1 encodes potassium sodium-activated channel subfamily T member 1 (1,230 aa). Sodium-activated K(+) channel. Acts as an important mediator of neuronal membrane excitability. Contributes to the delayed outward currents. Regulates neuronal bursting in sensory neurons. Highest expression in Brain Cerebellum (94.7 TPM) and Brain Cerebellar Hemisphere (80.1 TPM).
Developmental and epileptic encephalopathy, 14 is associated with mutations in the KCNT1 gene on chromosome 9.
KCNT1 is classified as a druggable target (Druggable Genome, Ion Channel, and Transporter categories) with score 2.6.
Penetrance is reported to be 100% for KCNT1-related EIMFS but is reported as reduced in KCNT1-related epilepsy with other seizure phenotypes .
Source: GeneReviews — "KCNT1-Related Epilepsy"
No formal diagnostic criteria for KCNT1-related epilepsy have been published to date. KCNT1-related epilepsy is most often associated with two phenotypes: epilepsy of infancy with migrating focal seizures (EIMFS) and autosomal dominant nocturnal frontal lobe epilepsy (ADNFLE). Less often, KCNT1 pathogenic variants are associated with epilepsy with variable presentation.
KCNT1-related epilepsy of infancy with migrating focal seizures (EIMFS) should be suspected in individuals with the following history and findings:
Source: GeneReviews — "KCNT1-Related Epilepsy"
Phenotypic and EEG features associated with KCNT1 pathogenic variants are not sufficient to diagnose KCNT1-related epilepsy. All genes known to be associated with early-infantile epileptic encephalopathy (30 have been identified; see OMIM Phenotypic Series) should be included in the differential diagnosis of KCNT1-related epilepsy including other genes less commonly associated with epilepsy of infancy with migrating focal seizures (SCN1A, SCN2A, SLC12A5, SLC25A22, TBC1D24, PLCB1) and autosomal dominant nocturnal frontal lobe epilepsy (CHRNA4, CHRNB2, DEPDC5, CRH). Note: At seizure onset, it is most important to distinguish KCNT1-related epilepsy from potentially treatable causes of early infantile-onset epileptic encephalopathy, such as neurometabolic disorders, CNS infection, structural brain lesions, and other syndromes . Table 2. Treatable Disorders Associated with Early Infantile-Onset Epileptic Encephalopathy
Conditions | Gene(s) | MOI | Clinical Findings | Treatment |
|---|---|---|---|---|
Genetic testing for KCNT1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for developmental and epileptic encephalopathy, 14 has been reported in the published literature.
No approved treatments are currently available for developmental and epileptic encephalopathy, 14. An additional 2 compounds hold orphan drug designation.
While no drugs are FDA-approved specifically for developmental and epileptic encephalopathy, 14, some of the following designated compounds may be used off-label in clinical practice. Treatment decisions should be made in consultation with a specialist familiar with this condition.
The following drugs have received orphan drug designation from the FDA for developmental and epileptic encephalopathy, 14. Orphan designation reflects regulatory interest and does not indicate approval for treatment.
Brand Name | Generic Name | Sponsor | Designated | Exclusivity End | Designation Status |
|---|---|---|---|---|---|
antrafenine | antrafenine | UniSA Ventures Pty Ltd | 2024 | — | Designated |
Anti-epileptic small molecule inhibitor of KCNT1 | Anti-epileptic small molecule inhibitor of KCNT1 | Actio Biosciences | 2024 | — | Designated |
Gene therapy approaches for developmental and epileptic encephalopathy, 14 have been reported in the published literature.
To establish the extent of disease and needs in an individual diagnosed with KCNT1-related epilepsy, the evaluations summarized in this section (if not performed as part of the evaluation that led to the diagnosis) are recommended:
Prolonged video EEG monitoring to evaluate electroclinical and electrographic seizure burden in consultation with a pediatric epileptologist
Evaluation by a movement disorder specialist if dictated by clinical presentation
Consideration of echocardiogram to evaluate for pulmonary collaterals
Electrocardiogram (EKG) to evaluate for cardiac rhythm abnormalities
Cognitive and behavioral assessment
Physical, occupational, and speech therapy evaluation
Consultation with a clinical geneticist and/or genetic counselor
Seizures. KCNT1-related epilepsy is often refractory to conventional anticonvulsants.
Source: GeneReviews — "KCNT1-Related Epilepsy"
2 trials found
EEG is recommended at intervals determined by seizure frequency and progression, for evaluation of new involuntary movements or unexplained, paroxysmal changes in vital signs, or following adjustments to an anticonvulsant regimen. Developmental evaluation and initiation of therapies is recommended at time of diagnosis if not already begun. Following initial EKG and echocardiogram, there is no indication to repeat cardiac monitoring or cardiopulmonary imaging unless clinically indicated or following initiation of quinidine therapy.
Source: GeneReviews — "KCNT1-Related Epilepsy"
Phenotype severity distribution: 6 always present features, 13 common features.
2 clinical trials registered, 2 recruiting. Interventions under study include drug therapy. Pipeline includes 1 PHASE2, 1 PHASE1. Research is primarily industry-sponsored.
207 publications have been identified in PubMed for developmental and epileptic encephalopathy, 14. Kisho has analyzed 83 by research type. Research spans Epidemiology / Natural History (31%), Review / Meta-Analysis (29%), and Basic Science / Preclinical (12%).
Research Type | Count | % of Total |
|---|---|---|
Disease patterns and progression | 26 | 31% |
Research summaries | 24 | 29% |
Laboratory research | 10 | 12% |
Clinical study results | 9 | 11% |
Patient case studies | 7 | 8% |
Testing and diagnosis research | 4 | 5% |
Other research | 2 | 2% |
New treatment approaches | 1 | 1% |
Dlugos DJ (2026). [PMID: 41133912](https://pubmed.ncbi.nlm.nih.gov/41133912/). *Epilepsia*. [Clinical Trial Publication]
Ludwig NN (2026). [PMID: 41533235](https://pubmed.ncbi.nlm.nih.gov/41533235/). *Qual Life Res*. [Epidemiology / Natural History]
Krygier M (2026). [PMID: 42200219](https://pubmed.ncbi.nlm.nih.gov/42200219/). *Ann Clin Transl Neurol*. [Epidemiology / Natural History]
Cheng L (2026). [PMID: 42220997](https://pubmed.ncbi.nlm.nih.gov/42220997/). *Front Pediatr*. [Review / Meta-Analysis]
Marchionni E (2026). [PMID: 41615502](https://pubmed.ncbi.nlm.nih.gov/41615502/). *Neurogenetics*. [Case Report / Case Series]
AlHadi NE (2026). [PMID: 42048301](https://pubmed.ncbi.nlm.nih.gov/42048301/). *Am J Case Rep*. [Case Report / Case Series]
Zhang G (2026). [PMID: 41133935](https://pubmed.ncbi.nlm.nih.gov/41133935/). *Epilepsia*. [Basic Science / Preclinical]
Mondragon E (2026). [PMID: 41215607](https://pubmed.ncbi.nlm.nih.gov/41215607/). *Epilepsia*. [Clinical Trial Publication]
GBD 2023 Mental Disorder Collaborators (2026). [PMID: 42167272](https://pubmed.ncbi.nlm.nih.gov/42167272/). *Lancet*. [Review / Meta-Analysis]
Boeri S (2026). [PMID: 41724124](https://pubmed.ncbi.nlm.nih.gov/41724124/). *Epilepsy Behav*. [Case Report / Case Series]
Data assembled from 8 of 12 sources · Last updated Sep 19, 2026, 7:50 AM UTC
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ALDH7A1 |
AR |
plasma urine alpha-aminoadipic semialdehyde; plasma CSF pipecolic acid |
Seizures/encephalopathy responsive to pyridoxine Pyridoxamine 5'-phosphate oxidase deficiency (OMIM 610090) |
— |
PNPO | AR | Lactic acidemia; Hypoglycemia | Seizures/encephalopathy responsive to pyridoxal 5-prime phosphate Biotinidase deficiency | — |
BTD | AR | Deficient biotinidase enzyme activity in serum or plasma; Ketolactic acidosis, organic aciduria, hyperammonemia; Skin rash, alopecia, recurrent viral or fungal infections | Lifelong biotin supplementation Glucose transporter 1 deficiency syndrome | — |
SLC2A1 | ADAR | CSF glucose concentration; Absence seizures beginning age 3 | Ketogenic diet Creatine deficiency syndromes | GAMT GATM |
SLC6A8 | ARXL | Cerebral creatine deficiency on brain MR spectroscopy; Suggestive ratio of guanidinoacetate, creatine, /or creatinine in plasma urine | Creatine monohydrate supplementation Holocarboxylase synthetase deficiency (OMIM 253270) | — |
HLCS | AR | Ketolactic acidosis, organic aciduria, hyperammonemia; Skin rash, alopecia | Responsive to biotin Serine biosynthesis disorders | PHGDH PSAT1 |
PSPH | AR | Congenital or acquired microcephaly, congenital cataracts | L-serine glycine supplementation can reduce seizures, improve psychomotor symptoms, prevent progression depending on subtype | — |
Other | Infection of the CNS | NA | — | — |
MRI, blood culture /or lumbar puncture suggestive of infection | Antibiotic, antiviral, or antifungal therapy Structural brain lesions | NA | (Multi)focal lesions on brain MRI | Tuberous sclerosis complex |
Source: GeneReviews — "KCNT1-Related Epilepsy"
AI-curated news mentioning developmental and epileptic encephalopathy, 14
Updated Sep 1, 2026
A recent study characterizes the phenotypic and transcriptomic features of biallelic RNU2-2 mutations associated with developmental and epileptic encephalopathy. This research enhances understanding of the disease mechanisms and may inform future therapeutic strategies.
A study identifies a de novo NR2F1 c.330 C>A variant linked to Bosch-Boonstra-Schaaf optic atrophy syndrome, which presents with early-onset developmental and epileptic encephalopathy. This discovery enhances understanding of the genetic underpinnings of these conditions.
Recent research utilizing optical genome mapping has uncovered previously undetected causal variants in early-onset developmental epileptic encephalopathies. This advancement could enhance diagnostic accuracy and treatment strategies for affected patients.