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Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the CACNA1A gene.
Features include always present findings: Global developmental delay, Epileptic encephalopathy, and Intellectual disability; and very common findings: Convulsive status epilepticus. 20 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 12 | Bilateral tonic-clonic seizure, Focal impaired awareness seizure, Global developmental delay |
Eyes | 2 | Strabismus, Nystagmus |
Muscles | 2 | Flexion contracture, Generalized hypotonia |
To date, fewer than 10,000 individuals with spinocerebellar ataxia type 6 (SCA6) have been identified. The following description of the phenotypic features associated with this condition is based on these reported individuals.
Table 2.
Features of Spinocerebellar Ataxia Type 6
Feature | % of Persons with Feature
Gait unsteadiness, upper-limb incoordination, intention tremor, dysarthria | 100%
Horizontal gaze-evoked nystagmus | 70%-100%
Vertical nystagmus | 65%-83%
Diplopia | 50%
Hyperreflexia extensor plantar responses | 40%-50%
Dystonia blepharospasm | 25%
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
CACNA1A encodes calcium voltage-gated channel subunit alpha1 A (2,506 aa). Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. Highest expression in Brain Cerebellum (304.8 TPM) and Brain Cerebellar Hemisphere (275.0 TPM).
Developmental and epileptic encephalopathy, 42 is associated with mutations in the CACNA1A gene on chromosome 19.
CACNA1A is classified as a druggable target (Druggable Genome and Ion Channel categories) with score 0.6.
Heterozygous individuals. Although the age of onset of symptoms of SCA6 correlates inversely with the length of the expanded CAG repeat, the same broad range of onset has been noted for individuals with 22 CAG repeats, the most common disease-associated allele . In the few individuals with (CAG)30 or (CAG)33, onset has been later than in individuals with (CAG)22 and (CAG)23 . A recent retrospective study showed even closer correlation of age of onset with the sum of the two allele sizes . Homozygous individuals. Several individuals who are homozygous for an abnormal expansion in CACNA1A have been reported .
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Penetrance is nearly 100%, although symptoms may not appear until the seventh decade.
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Formal diagnostic criteria for spinocerebellar ataxia type 6 (SCA6) have not been established.
SCA6 should be suspected in individuals with the following clinical and imaging findings:
Clinical findings include adult-onset, slowly progressive cerebellar ataxia; dysarthria; and nystagmus.
Imaging findings. Atrophy of the cerebellum, most pronounced in the cerebellar vermis, is present in symptomatic individuals with SCA6 .
The diagnosis of SCA6 is established in a proband with a heterozygous CAG repeat expansion in CACNA1A by molecular genetic testing .
Allele sizes
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Individuals with spinocerebellar ataxia type 6 (SCA6) may present with unexplained ataxia that is part of the larger differential diagnosis of hereditary and acquired ataxias (see Hereditary Ataxia Overview). It is difficult and often impossible to distinguish spinocerebellar ataxia type 6 (SCA6) from the other hereditary ataxias (see Hereditary Ataxia Overview). The differential diagnosis should also include Parkinson disease and acquired causes of cerebellar ataxia. SCA6-related CACNA1A pathogenic variants should be in the differential diagnosis of adult-onset sporadic progressive ataxia, multiple system atrophy (MSA). Table 4. Proportion of Individuals with SCA6 Manifesting Phenotypic Features Compared with Individuals with SCA1, SCA3, and SCA2
Phenotypic Feature | SCA2 | SCA1 | SCA3 | SCA6 |
|---|---|---|---|---|
Cerebellar dysfunction |
Genetic testing for CACNA1A is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for developmental and epileptic encephalopathy, 42. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with spinocerebellar ataxia type 6 (SCA6), the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 5. Recommended Evaluations Following Initial Diagnosis in Individuals with Spinocerebellar Ataxia Type 6
System/Concern | Evaluation | Comment |
|---|---|---|
Neurologic | Neurologic examination | Incl annual use of rating scale to assess progression Brain MRI |
Ophthalmologic | Consultation w/ophthalmologist | — |
Other | Consultation w/clinical geneticist /or genetic counselor | Family support/resources |
Treatment of Manifestations in Individuals with Spinocerebellar Ataxia Type 6 Manifestation/Concern | Treatment | Considerations/Other |
Ataxia | Acetazolamide | May eliminate episodes of ataxia but does not delay or slow overall progression; Modification of home w/aids incl grab bars, raised toilet seats, ramps to accommodate motorized chairs may be necessary.; Weighted eating utensils dressing hooks help maintain sense of independence. |
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Agents with sedative/hypnotic properties such as ethanol or certain medications may produce marked increases in incoordination.
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
suggested gabapentin and pregabalin as potential therapeutic agents. Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
View trials for developmental and epileptic encephalopathy, 42
Table 7.
Recommended Surveillance for Individuals with Spinocerebellar Ataxia Type 6
System/Concern | Evaluation | Frequency
| Neurologic evaluation | Every 6-12 mos
Physiatrist physical /or occupational therapist consultations | Every 12 mos to review need for walking aid(s) home adaptations
| • Nutrition evaluation
Video esophagram
Feeding assessment when dysphagia becomes troublesome
| As needed (e.g., w/any change in nutrition/feeding status)
| Evaluation w/ophthalmologist /or optometrist for prisms or surgery | As needed (e.g., when other interventions fail)
Assessment of driving ability by professional | Periodically
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Phenotype severity distribution: 3 always present features, 1 very common feature, 5 common features.
No clinical trials have been registered for developmental and epileptic encephalopathy, 42.
6 publications have been identified in PubMed for developmental and epileptic encephalopathy, 42. Research spans Case Report / Case Series (33%), Epidemiology / Natural History (33%), and Review / Meta-Analysis (17%).
Menzies L (2025). [PMID: 40445116](https://pubmed.ncbi.nlm.nih.gov/40445116/). *Prenat Diagn*. [Case Report / Case Series]
Kurganov E (2025). [PMID: 41370402](https://pubmed.ncbi.nlm.nih.gov/41370402/). *Sci Transl Med*. [Basic Science / Preclinical]
Ademuwagun IA (2025). [PMID: 39570184](https://pubmed.ncbi.nlm.nih.gov/39570184/). *Epilepsia Open*. [Epidemiology / Natural History]
Szymanowicz O (2024). [PMID: 38785745](https://pubmed.ncbi.nlm.nih.gov/38785745/). *Diseases*. [Review / Meta-Analysis]
Feng D (2024). [PMID: 39416860](https://pubmed.ncbi.nlm.nih.gov/39416860/). *Front Pediatr*. [Case Report / Case Series]
Viswanathan S (2024). [PMID: 39096015](https://pubmed.ncbi.nlm.nih.gov/39096015/). *Ann Neurol*. [Epidemiology / Natural History]
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 5:35 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
100%
100% |
100% |
100% |
Reduced saccadic velocity | 71%-92% | 50% | 10% | 0%-6% |
Myoclonus | 0%-40% | 0% | 4% | 0% |
Dystonia or chorea | 0%-38% | 20% | 8% | 0%-25% |
Pyramidal involvement | 29%-31% | 70% | 70% | 33%-44% |
Peripheral neuropathy | 44%-94% | 100% | 80% | 16%-44% |
Intellectual impairment | 31%-37% | 20% | 5% | 0% Percentages modified from , , , and |
Source: GeneReviews — "Spinocerebellar Ataxia Type 6"
Nutrition | Vitamin supplements | Particularly if caloric intake is reduced Feeding recommendations per feeding therapist / OT |
Osscilopsia | Diphenhydramine, baclofen, gabapentin | May reduce vertigo /or osscilopsia; Some literature supports 4-aminopyridine for vestibular symptoms.1 |
Diplopia | Refractive or surgical management per ophthalmologist | Some literature supports 4-aminopyridine for suppression of nystagmus.1 |
Dysarthria | Speech therapy | Communication devices such as writing pads computer-based devices as needed REM sleep behavior |
disorders | Clonazepam | Unless sedative effects increase imbalance in the morning |
Sleep apnea | Continuous positive airway pressure | OT = occupational therapist/therapy; PT = physical therapist/therapy 1. Surveillance Table 7. |
Recommended Surveillance for Individuals with Spinocerebellar Ataxia Type 6 System/Concern | Evaluation | Frequency |
Ataxia | Neurologic evaluation | Every 6-12 mos Physiatrist physical /or occupational therapist consultations |
Diplopia | Evaluation w/ophthalmologist /or optometrist for prisms or surgery | As needed (e.g., when other interventions fail) Assessment of driving ability by professional |