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Features include always present findings: Short stature, Coarse facial features, Ovarian carcinoma, and Microcephaly and others; and rarely findings: Proximal placement of thumb. 30 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Head and neck | 4 | Narrow palate, Coarse facial features, Thick upper lip vermilion |
BRCA1 encodes BRCA1 DNA repair associated (1,863 aa). E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. Highest expression in Cells EBV-transformed lymphocytes (19.8 TPM) and Testis (10.9 TPM).
Fanconi anemia, complementation group S is caused by mutations in the BRCA1 gene on chromosome 17.
BRCA1 is classified as a druggable target (Clinically Actionable, Dna Repair, Drug Resistance, Druggable Genome, Enzyme, and Tumor Suppressor categories) with score 0.6.
Recommendations for Fanconi anemia (FA) diagnostic criteria were agreed upon at a 2014 consensus conference and updated in 2020 (see Fanconi Anemia Clinical Care Guidelines). These guidelines have transitioned to a web-based document with interval updates of individual chapters as needed to remain current with field advances.
FA should be suspected in individuals with the following clinical, laboratory, and pathology findings and/or family history. Clinical findings (in ~75% of affected persons)
No approved treatments are currently available for Fanconi anemia, complementation group S. The disease remains an area of unmet medical need.
Clinical practice guidelines for management of Fanconi anemia (FA) are available (see Fanconi Anemia Clinical Care Guidelines).
To establish the extent of disease and management requirements in an individual diagnosed with FA, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended (see Fanconi Anemia Clinical Care Guidelines).
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended (see Fanconi Anemia Clinical Care Guidelines). Table 9. Fanconi Anemia: Recommended Surveillance
No clinical trials have been registered for Fanconi anemia, complementation group S.
211 publications have been identified in PubMed for Fanconi anemia, complementation group S. Research spans Basic Science / Preclinical (27%), Epidemiology / Natural History (25%), and Review / Meta-Analysis (22%).
Research Type | Count | % of Total |
|---|---|---|
Laboratory research | 57 | 27% |
Data assembled from 7 of 12 sources · Last updated Sep 18, 2026, 7:14 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
Common questions about Fanconi anemia, complementation group S
Brain and nerves
4 |
Ataxia, Intellectual disability, Delayed speech and language development |
Growth and development | 2 | Short stature, Failure to thrive |
Blood and immune system | 1 | Low red blood cell count (anemia) |
The primary clinical features of Fanconi anemia (FA) include physical abnormalities, progressive bone marrow failure manifest as pancytopenia, and cancer susceptibility; however, some individuals with FA have neither physical abnormalities nor bone marrow failure.
Table 2.
Fanconi Anemia: Frequency of Select Features
Feature | % of Persons w/Feature
Growth deficiency | 65%
Abnormal skin pigmentation | 40%
Skeletal malformations of upper limbs | 40%
Skeletal malformations of lower limbs | 5%
Microcephaly | 20%-25%
Kidney/ urinary tract anomalies | 20%-25%
Anomalies of internal external genitalia | Males: 25%Females: 2%
Endocrine disorders | 50%-75%
Ocular manifestations | 15%
Hearing loss | 10%
Developmental delay/ intellectual disability | 10%
Congenital heart defect | 6%
Gastrointestinal anomalies | 5%
Source: GeneReviews — "Fanconi Anemia"
The clinical spectrum of FA remains heterogenous, though some genotype-phenotype correlations have been identified. In general, null variants lead to a more severe phenotype (e.g., congenital anomalies, early-onset bone marrow failure, and MDS/AML) than hypomorphic variants. A review of genotype-phenotype associations in FA is available . BRCA2. Specific splice site variants in intron 7 (e.g., and ) offer the greatest risk of AML, with all homozygotes and compound heterozygotes developing AML by age three years . FANCA. Conflicting reports have associated and refuted association of homozygous FANCA null pathogenic variants with earlier-onset anemia and higher incidence of leukemia than individuals with pathogenic variants that permit production of an abnormal FANCA protein.
Source: GeneReviews — "Fanconi Anemia"
Prenatal and/or postnatal short stature
Abnormal skin pigmentation (e.g., caf au lait macules, hypopigmentation)
Skeletal malformations (e.g., hypoplastic thumb, hypoplastic radius)
Microcephaly
Genitourinary tract anomalies
Ocular manifestations
Otic anomalies/ hearing loss
Source: GeneReviews — "Fanconi Anemia"
Cells derived from individuals with other chromosome breakage syndromes may also exhibit high rates of spontaneous chromosome breakage; however, cells derived from individuals with Fanconi anemia (FA) exhibit increased chromosome breakage in response to diepoxybutane (DEB) and mitomycin C (MMC). Such chromosomal fragility is seen in few disorders but may be observed in cells derived from some, but not all, individuals with Seckel syndrome or Nijmegen breakage syndrome. In individuals with overlapping phenotypes, molecular genetic testing is necessary to confirm a diagnosis. See for selected examples of chromosome breakage syndromes and other disorders to consider in the differential diagnosis of FA. Table 5. Fanconi Anemia: Differential Diagnosis
Gene(s) | Disorder | MOI | Chromosome Breakage | Clinical Characteristics |
|---|---|---|---|---|
ATM | Ataxia-telangiectasia (A-T) | AR | Cells derived from persons w/A-T may exhibit high rates of spontaneous chromosome breakage. | Classic A-T is characterized by childhood onset of progressive neurologic manifestations (initially cerebellar ataxia), immunodeficiency, pulmonary disease, risk of malignancy, sensitivity to ionizing radiation. |
ATRCPAP (CENPJ)CEP152CEP63DNA2NINNSMCE2RBBP8TRAIP | Seckel syndrome (OMIM PS210600) | AR | May show chromosome breakage w/DNA cross-linking agents (MMC, DEB)1 | Growth deficiency, microcephaly w/ID, characteristic facial appearance; May be assoc w/pancytopenia /or AML |
BLM | Bloom syndrome (BSyn) | AR | Cells derived from persons w/BSyn may exhibit high rates of spontaneous chromosome breakage. | Severe pre- postnatal growth deficiency, immune abnormalities, sensitivity to sunlight, insulin resistance, high risk for many cancers that occur at an early age NBN |
Nijmegen breakage syndrome | AR | May manifest chromosome breakage w/MMC2 | Progressive microcephaly, early growth deficiency that improves w/age, recurrent respiratory infections, risk for malignancy (primarily lymphoma), premature ovarian failure in females; Intellectual abilities tend to decline over time. NF1 | — |
Neurofibromatosis 1 | AD | Not assoc w/chromosome breakage | Multiple caf au lait macules, intertriginous freckling, multiple cutaneous neurofibromas, learning disability or behavior problems, iris Lisch nodules, choroidal abnormalities RBM8A3 | — |
Thrombocytopenia absent radius syndrome | AR4 | Bilateral absence of radii w/presence of both thumbs thrombocytopenia that is generally transient AD = autosomal dominant; AML = acute myeloid leukemia; AR = autosomal recessive; DEB = diepoxybutane; FA = Fanconi anemia; ID = intellectual disability; MMC = mitomycin C; MOI = mode of inheritance 1. | — | — |
Source: GeneReviews — "Fanconi Anemia"
Genetic testing for BRCA1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for Fanconi anemia, complementation group S has been reported in the published literature.
Table 6.
Fanconi Anemia: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| • Growth assessment
Eval by endocrinologist
| Additional studies (growth hormone levels, bone age radiographs) as recommended by endocrinologist
| Clinical assessment for limb anomalies, hip dislocation, neck/spine anomalies, scoliosis | Referral to orthopedic surgeon as indicated
| Ultrasound of kidneys urinary tract | Referral to nephrologist, gynecologist, /or urologist as indicated
| • Exam by endocrinologist
Thyroid function tests
Brain MRI for pituitary abnormalities
| Additional studies (glucose tolerance testing, lipids, pituitary gonadal function testing) as recommended by endocrinologist
Eyes | Exam by ophthalmologist |
| Formal hearing eval | Referral to otolaryngologist as indicated
| Developmental assessment (esp important for toddlers school-age children) | Referral to neuropsychologist or developmental/behavioral pediatrician as indicated
Cardiac/
| • Echocardiogram
Source: GeneReviews — "Fanconi Anemia"
Blood transfusions. Blood products should be cytomegalovirus (CMV) safe and irradiated. To reduce the chances of sensitization, family members must not act as blood donors. Once an individual requires transfusions, the individual should be referred for transplantation. Toxic agents to avoid include smoking, secondhand smoke, and alcohol, which have been implicated in tumorigenesis. Excessive sun exposure. Sunscreen and sun-protective clothing should be used to limit UV exposure. Unsafe sex practices increase the risk for HPV-associated malignancy. Radiographic studies for the purpose of surveillance should be minimized in the absence of clinical indications. However, baseline skeletal surveys may be considered, in order to document bony anomalies that may lead to problems with age, such as anomalies of the wrist, hip, and vertebrae.
Source: GeneReviews — "Fanconi Anemia"
Gene therapy. Several early phase clinical trials of FANCA gene therapy using lentiviral vectors were conducted at sites worldwide, including Stanford University and University of Washington/ Fred Hutchinson Cancer Research Center in the United States, Hospital Universitari Vall d'Hebron Research Institute in Spain, and Shenzhen Geno-Immune Medical Institute in China. All of these trials are now terminated or no longer actively recruiting. Separately, the US National Heart, Lung, and Blood Institute completed a Phase I trial of retroviral vector transduction of autologous CD34+ stem cells in individuals with FANCC-related FA (results pending).
Source: GeneReviews — "Fanconi Anemia"
View trials for Fanconi anemia, complementation group S
Evaluation |
|---|
Frequency |
|---|
Growth | Growth/feeding/nutrition assessment | At each visit throughout childhood Scoliosis |
manifestations1 | Pubertal stage hormone levels | At puberty, then every 2 yrs until puberty is complete Endocrine eval incl:; TSH free thyroxine; 25-hydroxyvitamin D; 2-hr oral glucose tolerance test insulin levels |
Cataracts | Exam by ophthalmologist | At each visit throughout childhood, then annually |
Hearing loss | Formal hearing eval | At diagnosis serially if exposed to ototoxic medications (e.g., chemotherapy agents) |
Development | Developmental assessment | Annually throughout childhood |
Pancytopenia | Blood counts | Every 3-4 mos while stable more often as needed2,3 Myelodysplasia |
therapy | Liver function tests | Every 3-6 mos in those receiving androgen therapy Liver ultrasound for androgen-related changes, incl tumors |
cancers | Gynecologic assessment for genital lesions | Annually beginning at age 13 Thorough vulvo-vaginal exam Pap smear |
Source: GeneReviews — "Fanconi Anemia"
Phenotype severity distribution: 8 always present features.
Disease patterns and progression
53 |
25% |
Research summaries | 46 | 22% |
Clinical study results | 29 | 14% |
New treatment approaches | 11 | 5% |
Testing and diagnosis research | 9 | 4% |
Patient case studies | 5 | 2% |
Other research | 1 | 0% |
Gandhi A (2026). [PMID: 41637687](https://pubmed.ncbi.nlm.nih.gov/41637687/). *J Clin Oncol*. [Epidemiology / Natural History]
de Souza Wagner PH (2026). [PMID: 41436623](https://pubmed.ncbi.nlm.nih.gov/41436623/). *Br J Cancer*. [Review / Meta-Analysis]
Tung N (2026). [PMID: 40795806](https://pubmed.ncbi.nlm.nih.gov/40795806/). *J Natl Cancer Inst*. [Review / Meta-Analysis]
Liu ET (2026). [PMID: 41802188](https://pubmed.ncbi.nlm.nih.gov/41802188/). *JCO Precis Oncol*. [Epidemiology / Natural History]
Toss A (2026). [PMID: 41260260](https://pubmed.ncbi.nlm.nih.gov/41260260/). *Ann Oncol*. [Epidemiology / Natural History]
Quaas M (2026). [PMID: 40841483](https://pubmed.ncbi.nlm.nih.gov/40841483/). *Cell death and differentiation*. [Basic Science / Preclinical]
Kotsopoulos J (2026). [PMID: 41403285](https://pubmed.ncbi.nlm.nih.gov/41403285/). *J Natl Cancer Inst*. [Epidemiology / Natural History]
Gamble A (2026). [PMID: 41512859](https://pubmed.ncbi.nlm.nih.gov/41512859/). *Molecular cell*. [Basic Science / Preclinical]
Eze C (2026). [PMID: 41836332](https://pubmed.ncbi.nlm.nih.gov/41836332/). *Br J Biomed Sci*. [Review / Meta-Analysis]
Chang JCW (2026). [PMID: 41849730](https://pubmed.ncbi.nlm.nih.gov/41849730/). *JCO Precis Oncol*. [Epidemiology / Natural History]