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Glycogen storage disease due to acid maltase deficiency, infantile onset is the most severe form of glycogen storage disease due to acid maltase deficiency, characterized by cardiomegaly with respiratory distress, muscle weakness and feeding difficulties. It is often fatal.
Features include always present findings: Pleural effusion, Difficulty climbing stairs, Urinary incontinence, and Nonimmune hydrops fetalis and others. 39 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Muscles | 9 | Difficulty climbing stairs, Low muscle tone (hypotonia), Limb muscle weakness |
Lungs and breathing | 5 | Pleural effusion, Dyspnea, Difficulty breathing (respiratory insufficiency) |
Brain and nerves | 5 | Exercise intolerance, Hyporeflexia, Difficulty walking (gait disturbance) |
Lab test results | 4 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Elevated LDH (tissue damage marker) (increased circulating lactate dehydrogenase concentration), Increased circulating NT-proBNP concentration |
Heart and blood vessels | 3 | Subarachnoid hemorrhage, Enlarged heart (cardiomegaly), Sinus tachycardia |
Digestive system | 2 | Enlarged liver (hepatomegaly), Enlarged spleen (splenomegaly) |
Blood and immune system | 2 | Enlarged spleen (splenomegaly), Recurrent respiratory infections |
Ears | 1 | Hearing loss (hearing impairment) |
Kidneys and urinary system | 1 | Urinary incontinence |
Pregnancy and birth | 1 | Nonimmune hydrops fetalis |
Arms and legs | 1 | Limb muscle weakness |
Metabolism | 1 | Fever |
Traditionally, Pompe disease has been separated into two major phenotypes – infantile-onset Pompe disease (IOPD) and late-onset Pompe disease (LOPD) –based on age of onset, organ involvement (i.e., presence of cardiomyopathy), severity, and rate of progression. As a general rule, the earlier the onset of manifestations, the faster the rate of progression; thus, the two general classifications – IOPD and LOPD – tend to be clinically useful in determining prognosis and treatment options. Although LOPD has been divided into childhood-, juvenile-, and adult-onset disease, many individuals with adult-onset disease recall symptoms beginning in childhood and, thus, late onset is often the preferred term for those presenting after age 12 months.
Source: GeneReviews — "Pompe Disease"
GAA encodes alpha glucosidase (952 aa). Essential for the degradation of glycogen in lysosomes. Has highest activity on alpha-1,4-linked glycosidic linkages, but can also hydrolyze alpha-1,6-linked glucans Highest expression in Testis (118.9 TPM) and Spleen (78.4 TPM).
Glycogen storage disease due to acid maltase deficiency, infantile onset is associated with mutations in the GAA gene on chromosome 17.
The GAA protein participates in SFTPB P121Efs*95 and GAA (70, 76 kDa) pathways.
GAA is classified as a druggable target (Druggable Genome and Enzyme categories) with score 0.7.
Combinations of pathogenic variants that result in complete absence of acid alpha-glucosidase (GAA) enzyme activity are seen more commonly in IOPD, whereas combinations of pathogenic variants that result in partial enzyme activity are seen more commonly in LOPD.
GAA pathogenic variants that introduce mRNA instability, such as nonsense pathogenic variants, are more commonly seen in IOPD, as they result in nearly complete absence of GAA enzyme activity.
GAA pathogenic missense and splicing variants may result in either complete or partial absence of GAA enzyme activity and therefore may be seen in both IOPD and LOPD [Zampieri et al 2011].
Observations about genotype-phenotype correlations with specific pathogenic variants include:
Source: GeneReviews — "Pompe Disease"
Pompe disease can be classified by age of onset, organ involvement, severity, and rate of progression:
Infantile-onset Pompe disease (IOPD). Individuals with onset before age 12 months with cardiomyopathy
• Late-onset Pompe disease (LOPD)
Individuals with onset before age 12 months without cardiomyopathy
All individuals with onset after age 12 months
A diagnosis of Pompe disease may be suspected due to an prior to onset of suggestive findings or may be considered because of .
NBS for Pompe disease is primarily based on use of dried blood spots collected between 24 and 72 hours after birth to quantify acid alpha-glucosidase (GAA) enzyme activity. Pompe disease is included in the United States (US) Secretary of Health and Human Services Recommended Unifor...
Source: GeneReviews — "Pompe Disease"
Infantile-Onset Pompe Disease (IOPD) Table 5. Genes of Interest in the Differential Diagnosis of Infantile-Onset Pompe Disease
Gene | Disorder | MOI | Clinical Features/ Comment |
|---|---|---|---|
AGL | Glycogen storage disease type IIIa (debrancher deficiency) | AR | Hypotonia, cardiomegaly, muscle weakness, serum CK concentration w/more dramatic liver involvement than typically seen in Pompe disease |
GBE1 | Glycogen storage disease type IV (glycogen branching enzyme deficiency) |
Genetic testing for GAA is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for glycogen storage disease due to acid maltase deficiency, infantile onset has been reported in the published literature.
No approved treatments are currently available for glycogen storage disease due to acid maltase deficiency, infantile onset. The disease remains an area of unmet medical need.
Clinical practice guidelines for Pompe disease have been published:
Guidelines for individuals ascertained by newborn screening [Kronn et al 2017]
Guidelines for infantile-onset Pompe disease (IOPD) [American College of Medical Genetics expert panel; see Kishnani et al 2006]
Guidelines for late-onset Pompe disease (LOPD) [Cupler et al 2012]
To establish the extent of disease and needs in an individual diagnosed with Pompe disease, the evaluations summarized in for IOPD and for LOPD (if not performed already) are recommended.
Table 7.
Infantile-Onset Pompe Disease: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
Constitutional
| Measurement of weight, length, head circumference | To assess for poor growth
| Assess for signs/symptoms of respiratory insufficiency. | Incl for cough, wheeze, labored breathing, dyspnea, energy level, exercise tolerance, and fatigability feeding difficulties, or sleep disturbance
Chest radiograph | To assess for cardiomegaly, apparent lung volume reduction, areas of atelectasis, any pulmonary fluid
Consider pulmonary function tests. | • Most affected persons demonstrate pulmonary insufficiency.
Assessing ventilatory capacity in supine position can detect early ventilatory insufficiency.
Pulse oximetry, respiratory rate, venous bicarbonate /or pCO2 should be obtained to assess for alveolar hypoventilation.1 |
| Assess for macroglossia. |
| EKG echocardiog...
Source: GeneReviews — "Pompe Disease"
Use of standard drugs for treatment of cardiac manifestations may be contraindicated in certain stages of the disease. The use of digoxin, ionotropes, diuretics, and afterload-reducing agents may worsen left ventricular outflow obstruction, although they may be indicated in later stages of the disease. Hypotension and volume depletion should be avoided. Anesthesia should be used only when absolutely necessary because reduced cardiovascular return and underlying respiratory insufficiency pose significant risks. Exposure to infectious agents is to be avoided.
Source: GeneReviews — "Pompe Disease"
In utero therapy. In utero alglucosidase alfa therapy (20 mg/kg of estimated fetal weight) was given to an affected fetus every two weeks from 24 5/7 weeks' gestation to 34 5/7 weeks' gestation as part of a clinical trial. After birth, the infant received immunotolerance induction and alglucosidase alfa ERT at various doses. Follow up through approximately age 12 months noted normal cardiac function and attainment of appropriate gross motor milestones [Cohen et al 2022]. Gene therapy to correct the underlying enzyme defect is under investigation [Raben et al 2002, DeRuisseau et al 2009, Mah et al 2010]. A Phase I/II trial to investigate the ability of adeno-associated virus (AAV)-mediated delivery of GAA to improve ventilation reported outcomes of children with IOPD treated with ERT.
Source: GeneReviews — "Pompe Disease"
View trials for glycogen storage disease due to acid maltase deficiency, infantile onset
Updated management and surveillance guidelines have been published by the Pompe Disease Newborn Screening Working Group [Kronn et al 2017], summarized in . To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations in are recommended. Given the wide age range in individuals with LOPD, most of the recommendations can be applied to both IOPD and LOPD; however, there are some differences highlighted in .
Table 11.
Pompe Disease: Recommended Surveillance
System/Concern | Evaluation | Frequency
Constitutional
| • Measurement of growth parameters
Eval of nutritional status safety of oral intake
| At each visit
| Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, changes in tone, movement disorders.
Brain imaging to evaluate for intracranial vasculopathy | As clinically indicated for persons w/LOPD
| Monitor developmental progress educational needs. | At each visit
| Physical medicine, OT/PT assessment of mobility, self-help skills
Clinical assessment for scoliosis
DXA scan | • IOPD: every 2-3 yrs until puberty, then every 1-2 yrs
LOPD: Consider annual screening.
CK level | At each visit, particularly in those persons identified on NBS w/LOPD very early clinical symptoms
| Monitor for evidence of aspiration respiratory insufficiency.
Source: GeneReviews — "Pompe Disease"
Phenotype severity distribution: 18 always present features.
Estimated prevalence: Unknown (Unknown prevalence).
No clinical trials have been registered for glycogen storage disease due to acid maltase deficiency, infantile onset.
57 publications have been identified in PubMed for glycogen storage disease due to acid maltase deficiency, infantile onset. Research spans Review / Meta-Analysis (32%), Diagnostic / Biomarker (16%), and Basic Science / Preclinical (14%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 18 | 32% |
Testing and diagnosis research | 9 | 16% |
Laboratory research | 8 | 14% |
Disease patterns and progression | 7 | 12% |
Clinical study results | 5 | 9% |
Patient case studies | 4 | 7% |
New treatment approaches | 4 | 7% |
Other research | 2 | 4% |
Erdem Karapınar F (2026). [PMID: 41453391](https://pubmed.ncbi.nlm.nih.gov/41453391/). *Neuropediatrics*. [Epidemiology / Natural History]
Li D (2026). [PMID: 41865505](https://pubmed.ncbi.nlm.nih.gov/41865505/). *Mol Genet Metab*. [Clinical Trial Publication]
Domínguez-González C (2026). [PMID: 41638029](https://pubmed.ncbi.nlm.nih.gov/41638029/). *Neuromuscul Disord*. [Diagnostic / Biomarker]
Boueri M (2026). [PMID: 41719911](https://pubmed.ncbi.nlm.nih.gov/41719911/). *Mol Genet Metab*. [Review / Meta-Analysis]
Nowlin P (2026). [PMID: 41349290](https://pubmed.ncbi.nlm.nih.gov/41349290/). *Mol Genet Metab*. [Basic Science / Preclinical]
Croce MG (2026). [PMID: 41554264](https://pubmed.ncbi.nlm.nih.gov/41554264/). *J Inherit Metab Dis*. [Diagnostic / Biomarker]
Khoja IT (2026). [PMID: 41084863](https://pubmed.ncbi.nlm.nih.gov/41084863/). *Genet Med*. [Diagnostic / Biomarker]
Morales A (2026). [PMID: 29262159](https://pubmed.ncbi.nlm.nih.gov/29262159/). *Unknown Journal*. [Other]
van den Dorpel JJA (2026). [PMID: 42219246](https://pubmed.ncbi.nlm.nih.gov/42219246/). *J Inherit Metab Dis*. [Diagnostic / Biomarker]
Sharshakova A (2026). [PMID: 42074341](https://pubmed.ncbi.nlm.nih.gov/42074341/). *Int J Mol Sci*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 20, 2026, 9:35 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
AR |
Hypotonia, cardiomegaly, muscle weakness, serum CK concentration w/more dramatic liver involvement than typically seen in Pompe disease (similar to GSD IIIa) LAMP2 |
Danon disease | XL | Hypotonia, hypertrophic cardiomyopathy, myopathy as a result of excessive glycogen storage; Males are more severely affected than females typical age of presentation w/cardiomyopathy weakness is in mid-adolescence, although a few persons w/infantile onset have been reported. | — |
Hypertrophic cardiomyopathy | AD2 | Typically defined by presence of unexplained LVH. Such LVH occurs in a non-dilated ventricle in the absence of other cardiac or systemic disease capable of producing the observed magnitude of LV wall thickness, such as pressure overload or storage/infiltrative disorders. | — |
Primary carnitine deficiency | AR | Muscle weakness cardiomyopathy w/o serum CK concentration; Phenotypes vary widely, incl asymptomatic females ascertained through NBS of their newborns.; Acutely symptomatic infants may have encephalopathy or coma, which is unusual in Pompe disease. SMN1 | — |
Spinal muscular atrophy I | AR | Hypotonia, feeding difficulties, progressive proximal muscle weakness, areflexia; No cardiac involvement; Lack of cardiomegaly should help distinguish SMA I from IOPD. 350 genes3 | — |
Primary mitochondrial disorders | MTARADXL | Mitochondrial/ respiratory chain disorders show wide variation in clinical presentation may include hypotonia, respiratory failure, cardiomyopathy, hepatomegaly, seizures, deafness, serum CK concentration. | — |
Source: GeneReviews — "Pompe Disease"