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Features include always present findings: Cerebral hemorrhage, Bone marrow maturation arrest, Cerebellar hypoplasia, and Thin corpus callosum and others; and sometimes findings: Stroke, Strabismus, Hypoplasia of the corpus callosum, and Bicuspid aortic valve and others. 18 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 4 | Cerebral hemorrhage, Stroke, Mild intellectual disability |
Heart and blood vessels | 2 | Stroke, Bicuspid aortic valve |
Blood and immune system | 2 | Abnormality of the coagulation cascade, Recurrent infections |
Bones and joints | 1 | Bone marrow maturation arrest |
Eyes | 1 | Strabismus |
Arms and legs | 1 | Short finger |
Age of onset: at birth.
FLNA deficiency is prenatally or neonatally lethal in most males; therefore, the majority of affected individuals are female. To date, more than 100 individuals (both males and females) have been identified with loss-of-function variants in FLNA. The following description of the phenotypic features associated with this condition is based on these reports. Table 2. FLNA Deficiency: Frequency of Select Features (Males and Females)
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Seizure disorder | 75%-90% | — |
Cardiovascular | 65% | Patent ductus arteriosus; dilatation rupture of thoracic aorta; atrial ventricular septal defects; valvular dystrophy; vasculopathy /or coagulopathy stroke |
Pulmonary disease | 25% | Pulmonary hypertension, alveolar hypoplasia, emphysema, asthma, chronic bronchitis |
gastric motility | 6% | Chronic intestinal pseudo-obstruction, feeding difficulties |
Joint hypermobility | 15% | — |
Distally shortened digits | 5% | Seizure disorder. Approximately 88% of individuals (including males and females) with FLNA-related periventricular nodular heterotopia (PVNH) have presented with a seizure disorder ; in other series that included investigation of asymptomatic heterozygous mothers, the percentage was 63.3% . |
Source: GeneReviews — "FLNA Deficiency"
FLNA encodes filamin A (2,647 aa). Promotes orthogonal branching of actin filaments and links actin filaments to membrane glycoproteins. Highest expression in Artery Tibial (4,951 TPM) and Colon Sigmoid (3,959 TPM).
Heterotopia, periventricular, X-linked dominant is associated with mutations in the FLNA gene on chromosome X.
The FLNA protein participates in Budding of hRSV A virions from infected cell pathway.
FLNA is classified as a druggable target (Druggable Genome and Transporter categories) with score 26.1.
, , and have been associated with isolated X-linked cardiac valvular dysplasia . Affected males were found to have more severe valvular disease . Females with PVNH typically have FLNA variants predicted to cause severe loss of function (e.g., nonsense, frameshift, and severe splicing variants) throughout the gene or missense variants in the N-terminal actin-binding domain . Surviving affected males. Nonsense variants in surviving males often affect the C terminus of the protein, consistent with partial loss of function, while missense variants in surviving males can be scattered throughout the gene . Presumably, these pathogenic variants lead to a partially functional protein .
Source: GeneReviews — "FLNA Deficiency"
All individuals with known deleterious loss-of-function FLNA variants typically have shown periventricular nodular heterotopia. Penetrance for other phenotypes has not been determined.
Source: GeneReviews — "FLNA Deficiency"
FLNA deficiency should be suspected in an individual with the following clinical features, neuroimaging findings, and family history. (Note: Affected males frequently show male lethality.)
Clinical features
Seizure disorder
Cardiovascular findings: dilated aortic root or thoracic ascending aorta, valvular heart disease, structural heart disease
Pulmonary findings: pulmonary hypertension, alveolar hypoplasia, emphysema, asthma, chronic bronchitis
Gastrointestinal manifestations: feeding difficulties, constipation, progressive weight loss, congenital short bowel, chronic intestinal pseudo-obstruction
Joint hypermobility
Neuroimaging features
Source: GeneReviews — "FLNA Deficiency"
Periventricular nodular heterotopia (PVNH) has been reported in individuals with the disorders listed (whether each of these represents a truly distinct disorder or FLNA-related PVNH plus a concurrent condition remains to be determined). Table 3a. Disorders That May Be Associated with Periventricular Nodular Heterotopia (PVNH)
Gene(s) | Disorder | MOI | Comment |
|---|---|---|---|
ARF1 | PVNH8 (OMIM 618185) | AD | — |
ARFGEF2 | PVNH2 (OMIM 608097) |
Genetic testing for FLNA is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for heterotopia, periventricular, X-linked dominant has been reported in the published literature.
No approved treatments are currently available for heterotopia, periventricular, X-linked dominant. The disease remains an area of unmet medical need.
No clinical practice guidelines for FLNA deficiency have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with FLNA deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with FLNA Deficiency
System/Concern | Evaluation | Comment |
|---|---|---|
Cardiology | Echocardiogram or MRA to evaluate for valvular dysplasia, congenital cardiac anomalies, or aortic vascular disease | Because of potential risk for cardiovascular anomalies /or thoracic aortic aneurysm, consider baseline eval by cardiologist. Pulmonary |
Musculoskeletal | Eval for joint hypermobility if observed | PT eval as needed for specific issues |
Hematology | Eval by hematologist if findings suggest a bleeding diathesis or abnormal platelet size or number. | — |
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval for dyslexia; Eval for early intervention if needed Genetic counseling |
Treatment of Manifestations in Individuals with FLNA Deficiency Manifestation/Concern |
Source: GeneReviews — "FLNA Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "FLNA Deficiency"
View trials for heterotopia, periventricular, X-linked dominant
Table 6. Recommended Surveillance for Individuals with FLNA Deficiency
System/Concern | Evaluation | Frequency |
|---|---|---|
Neurologic | Monitor those w/seizures as clinically indicated. | At each visit Assess for new manifestations incl seizures, changes in tone, mvmt disorders. |
Pulmonary | Follow up as dictated by findings severity | Consider frequent follow up from birth to age 3 yrs due to continued lung development in young children. |
Gastrointestinal | Monitor for constipation. | At each visit Musculoskeletal |
Source: GeneReviews — "FLNA Deficiency"
Phenotype severity distribution: 8 always present features.
No clinical trials have been registered for heterotopia, periventricular, X-linked dominant.
55 publications have been identified in PubMed for heterotopia, periventricular, X-linked dominant. Research spans Case Report / Case Series (36%), Review / Meta-Analysis (18%), and Basic Science / Preclinical (16%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 20 | 36% |
Research summaries | 10 | 18% |
Laboratory research | 9 | 16% |
Disease patterns and progression | 8 | 15% |
Other research | 3 | 5% |
Testing and diagnosis research | 2 | 4% |
New treatment approaches | 2 | 4% |
Clinical study results | 1 | 2% |
Zhang S (2026). [PMID: 42044617](https://pubmed.ncbi.nlm.nih.gov/42044617/). *Seizure*. [Case Report / Case Series]
Pai V (2026). [PMID: 41565358](https://pubmed.ncbi.nlm.nih.gov/41565358/). *AJNR Am J Neuroradiol*. [Other]
Hadi E (2026). [PMID: 41987549](https://pubmed.ncbi.nlm.nih.gov/41987549/). *Ultrasound Obstet Gynecol*. [Basic Science / Preclinical]
Zhang Y (2026). [PMID: 41822039](https://pubmed.ncbi.nlm.nih.gov/41822039/). *Neurol Genet*. [Basic Science / Preclinical]
Archer J (2026). [PMID: 40874586](https://pubmed.ncbi.nlm.nih.gov/40874586/). *Clin Genet*. [Epidemiology / Natural History]
Stewart R (2026). [PMID: 40838347](https://pubmed.ncbi.nlm.nih.gov/40838347/). *Am J Med Genet A*. [Case Report / Case Series]
Dastagirzada YM (2026). [PMID: 41774607](https://pubmed.ncbi.nlm.nih.gov/41774607/). *Pediatr Neurosurg*. [Review / Meta-Analysis]
Luo D (2026). [PMID: 41972067](https://pubmed.ncbi.nlm.nih.gov/41972067/). *Quant Imaging Med Surg*. [Basic Science / Preclinical]
Parfyonov M (2026). [PMID: 41978567](https://pubmed.ncbi.nlm.nih.gov/41978567/). *Epilepsia*. [Basic Science / Preclinical]
Song J (2026). [PMID: 42067951](https://pubmed.ncbi.nlm.nih.gov/42067951/). *Acta Epileptol*. [Review / Meta-Analysis]
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 9:40 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
AR
Reported in 2 Turkish families w/PVNH microcephaly1 in a female w/a movement disorder, neuronal migration disorder, acquired microcephaly2 |
EML1 | Band heterotopia (OMIM 600348) | AR | Megalencephaly, ribbon-like subcortical band heterotopia, severe developmental delay |
FMR1 | Fragile X syndrome (See FMR1 Disorders.) | XL | PVNH (unilateral/bilateral isolated) reported in 2 boys w/fragile X syndrome3 (PVNH is very rare in fragile X syndrome.) |
MAP1B | PVNH9 (OMIM 618918) | AD | See footnote 4. TSC1 |
TSC2 | Tuberous sclerosis complex (TSC) | AD | PVNH may be misdiagnosed initially as TSC; however, MRI findings distinguish the disorders AD = autosomal dominant; AR = autosomal recessive; MOI = mode of inheritance; XL = X-linked 1. , 2. 3. 4. lists autosomal dominant forms of PVNH that have been mapped to chromosomal loci (OMIM PS300049). |
Source: GeneReviews — "FLNA Deficiency"
Considerations/Other |
Epilepsy | Treatment w/ASM; choice of ASMs is generally made empirically based on clinical features of the seizure disorder. | No significant differences exist between ASMs for newly diagnosed, presumably localized epilepsy; choices may be made on specific attributes of each ASM (e.g., risk of teratogenicity during pregnancy, tolerability, efficacy). Congenital heart disease/ Cardiovascular disease |
Joint hypermobility | Treatment per orthopedist, PT, /or OT can incl braces to improve joint stability, ring splints to stabilize interphalangeal joints. | — |
Bleeding diathesis | Treatment per hematologist | — |
Dyslexia | Early intervention services special education support | ASM = anti-seizure medication; GERD = gastroesophageal reflux disease; OT = occupational therapy; PT = physical therapy Surveillance Table 6. |
Recommended Surveillance for Individuals with FLNA Deficiency System/Concern | Evaluation | Frequency |
Neurologic | Monitor those w/seizures as clinically indicated. | At each visit Assess for new manifestations incl seizures, changes in tone, mvmt disorders. |