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The X-linked variant of the Hyper-IgM syndrome. The affected individuals are virtually always male, because males only have one X chromosome, received from their mothers. Their mothers are not symptomatic, even though they are carriers of the allele, because the trait is recessive. Male offspring of these women have a 50% chance of inheriting their mother's mutant allele.
Features include always present findings: Decreased circulating IgG concentration; and very common findings: Pneumocystis jirovecii pneumonia. 39 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 7 | Recurrent lower respiratory tract infections, Recurrent bacterial infections, Enlarged spleen (splenomegaly) |
Digestive system | 6 | Liver scarring (cirrhosis) (cirrhosis), Enlarged liver (hepatomegaly), Chronic hepatitis |
Brain and nerves | 6 | Overactive reflexes (hyperreflexia), Meningitis, Loss of previously acquired skills (developmental regression) |
Lungs and breathing | 3 | Recurrent lower respiratory tract infections, Pneumocystis jirovecii pneumonia, Low blood oxygen levels (hypoxemia) |
Growth and development | 1 | Failure to thrive |
Lab test results | 1 | Increased circulating IgA concentration |
CD40 ligand deficiency, a disorder of abnormal T- and B-cell function, is characterized by low serum concentrations of immunoglobulin (Ig) G, IgA, and IgE and normal or elevated serum concentrations of IgM. CD40 ligand deficiency is due to defects or deficiencies in the CD40 ligand (CD40L) protein that affect T cell communication with B lymphocytes. Mitogen proliferation may be normal but NK- and T-cell cytotoxicity can be impaired. Antigen-specific responses are usually decreased or absent.
The range of clinical findings varies, even within the same family. More than 50% of males with CD40 ligand deficiency develop symptoms by age one year, and more than 90% are symptomatic by age four years . Presentation.
Source: GeneReviews — "CD40 Ligand Deficiency"
CD40LG encodes CD40 ligand (261 aa). Cytokine that acts as a ligand to CD40/TNFRSF5. Costimulates T-cell proliferation and cytokine production. Highest expression in Spleen (5.5 TPM) and Whole Blood (4.4 TPM).
Hyper-IgM syndrome type 1 is caused by mutations in the CD40LG gene on chromosome X.
CD40LG is classified as a druggable target (Cell Surface, Druggable Genome, External Side Of Plasma Membrane, and Kinase categories) with score 3.6.
Males with CD40 ligand deficiency show remarkable variability in clinical symptoms. No specific genotype-phenotype correlations for CD40LG have been identified . However, the and pathogenic variants have been reported in unrelated families with milder and later-onset disease . Whether or not this is a true association needs to be evaluated with study of additional families with these pathogenic variants.
Source: GeneReviews — "CD40 Ligand Deficiency"
CD40 ligand deficiency should be suspected in any male presenting with Pneumocystis jirovecii pneumonia, persistent Cryptosporidium diarrhea, recurrent upper- and lower-respiratory tract bacterial infections, neutropenia, or sclerosing cholangitis and associated bile duct tumors with the following laboratory abnormalities:
Absent or low serum concentrations of immunoglobulin (Ig) G and IgA
Normal or elevated serum concentrations of IgM
Normal number and distribution of T, B, and NK lymphocyte subsets
Normal T-cell proliferation in response to mitogens
Decreased expression of CD40 ligand (CD40L) on the surface of activated CD4 cells (not universal)
The diagnosis of CD40 ligand deficiency is established in a male proband with typical clinical and la...
Source: GeneReviews — "CD40 Ligand Deficiency"
Genetic disorders of interest in the differential diagnosis of CD40 ligand deficiency are listed in . Table 2. CD40 Ligand Deficiency: Differential Diagnosis
Gene(s) | Disorder1 | MOI | Features of Disorder |
|---|---|---|---|
Overlapping w/CD40 ligand deficiency | Distinguishing from CD40 ligand deficiency AICDA(AID) | AID deficiency (OMIM 605258) | AR |
CD40 | CD40 deficiency (OMIM 606843) |
Genetic testing for CD40LG is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for hyper-IgM syndrome type 1. The disease remains an area of unmet medical need.
No clinical practice guidelines for CD40 ligand deficiency have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with CD40 ligand deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
CD40 Ligand Deficiency: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
Hematology/
| • CBC w/differential
IgG levels
T, B, NK cell numbers
| For evidence of cytopenias
| Baseline chest radiograph pulmonary function testing | For chronic lung changes due to infection; if present, consider pulmonology eval.
| PCR-based testing of stools | For presence of Cryptosporodium or other enteric pathogens; if present, partner w/gastroenterologist.
Nutritional assessment |
| Baseline liver function testing liver/ biliary tree ultrasound | For evidence of hepatocyte dysfunction developing biliary dilatation
| All affected persons should be offered HLA typing at diagnosis. | For consideration of HSCT
| By genetics professionals1 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of CD40 ligand deficiency to facilitate medical personal decision making
Source: GeneReviews — "CD40 Ligand Deficiency"
Avoid areas that place the individual at risk of contracting Cryptosporidium including pools, lakes, ponds, or certain water sources. Avoid drinking unpurified or unfiltered water. Live vaccines such as rotavirus, MMR (measles, mumps, and rubella), varicella, live attenuated polio, and BCG (bacillus Calmette-Gurin for tuberculosis) should not be given to individuals with CD40 ligand deficiency.
Source: GeneReviews — "CD40 Ligand Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "CD40 Ligand Deficiency"
4 trials found
No guidelines have been published for ongoing surveillance in individuals with CD40 ligand deficiency. presents the current recommendations of the authors. Table 5. CD40 Ligand Deficiency: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Hematology | CBC w/differential to monitor for cytopenias | At least every 6-12 mos if stable or w/any change in clinical status |
Immunology | IgG levels | Depends on time needed to achieve adequate IgG levels; similar to those w/primary antibody deficiency syndromes Lymphocyte subpopulations: T, B, NK cell numbers |
Pulmonary | Pulmonary function tests | Annually for those age 7 yrs or if change in clinical status Chest radiograph w/follow up of pulmonary infiltrates w/high-res CT scan |
Gastrointestinal | PCR-based testing of stools for infectious etiologies | At least every 6 mos or if diarrhea is present or exposure occurs Liver function tests |
Oncology | Physical exam w/low threshold for lymph node biopsy | Children: at least every 4-6 mos CBC = complete blood count; HSCT = hematopoietic stem cell transplantation; Ig = immunoglobulin; PCR = polymerase chain reaction |
Source: GeneReviews — "CD40 Ligand Deficiency"
Phenotype severity distribution: 1 always present feature, 1 very common feature, 7 common features.
4 clinical trials registered, 2 recruiting. Interventions under study include drug therapy, biologic therapy, and other interventions. Pipeline includes 2 PHASE2, 1 NA. Research is primarily sponsored by academic and government institutions.
17 publications have been identified in PubMed for hyper-IgM syndrome type 1. Research spans Case Report / Case Series (50%), Review / Meta-Analysis (13%), and Basic Science / Preclinical (13%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 8 | 50% |
Research summaries | 2 | 13% |
Laboratory research | 2 | 13% |
Disease patterns and progression | 2 | 13% |
New treatment approaches | 2 | 13% |
Yu U (2026). [PMID: 42081979](https://pubmed.ncbi.nlm.nih.gov/42081979/). *Transplant Cell Ther*. [Epidemiology / Natural History]
Lazzarotto CR (2026). [PMID: 41482541](https://pubmed.ncbi.nlm.nih.gov/41482541/). *Nat Biotechnol*. [Gene Therapy / Novel Therapeutics]
Celis-Giraldo D (2025). [PMID: 40933814](https://pubmed.ncbi.nlm.nih.gov/40933814/). *Case Rep Nephrol*. [Case Report / Case Series]
Fan H (2025). [PMID: 39911395](https://pubmed.ncbi.nlm.nih.gov/39911395/). *Front Immunol*. [Epidemiology / Natural History]
Bammigatti A (2025). [PMID: 39615244](https://pubmed.ncbi.nlm.nih.gov/39615244/). *Cytokine*. [Review / Meta-Analysis]
Kuo CY (2025). [PMID: 40262278](https://pubmed.ncbi.nlm.nih.gov/40262278/). *J Immunol*. [Review / Meta-Analysis]
Chen Y (2025). [PMID: 40585763](https://pubmed.ncbi.nlm.nih.gov/40585763/). *Exploration (Beijing, China)*. [Basic Science / Preclinical]
Li W (2025). [PMID: 41451037](https://pubmed.ncbi.nlm.nih.gov/41451037/). *Infect Drug Resist*. [Case Report / Case Series]
Li JW (2025). [PMID: 40784008](https://pubmed.ncbi.nlm.nih.gov/40784008/). *Jt Dis Relat Surg*. [Case Report / Case Series]
Li X (2025). [PMID: 40330326](https://pubmed.ncbi.nlm.nih.gov/40330326/). *Glob Med Genet*. [Case Report / Case Series]
Data assembled from 9 of 12 sources · Last updated Nov 4, 2026, 2:10 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Clinically indistinguishable w/recurrent bacterial infections opportunistic infections w/Pneumocystis jirovecii, Cryptosporidium, sclerosing cholangitis5 |
UNG | UNG deficiency (OMIM 608106) | AR | Recurrent bacterial infections |
MSH6 | MSH6 deficiency (constitutional mismatch repair deficiency; see Lynch Syndrome) | AR | or normal IgM, or normal IgG, normal B cell counts, normal memory B cells w/ class-switched B cells |
PMS2 | PMS2 deficiency (constitutional mismatch repair deficiency; see Lynch Syndrome) | AR | Recurrent infections; or normal IgM w/ IgG IgA; Normal B cell counts but memory B cells |
TNFRSF13C | Common variable immunodeficiency (CVID; OMIM PS607594) | ARAD | Recurrent sinopulmonary infections; immunoglobulins incl IgG IgA; CD40L protein expression may be . |
May be assoc w/ number of total T cells or T-cell function6 ADAAK2CD3DCD3ECD247CORO1ADCLRE1CIL2RGIL7RJAK3PRKDCPTPRCRAG1RAG27 | Severe combined immunodeficiency (SCID; see X-Linked SCID Adenosine Deaminase Deficiency) | ARXL | All SCIDs must be considered in infants presenting w/Pneumocystis jirovecii pneumonia. |
Source: GeneReviews — "CD40 Ligand Deficiency"