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Immunodysregulation - polyendocrinopathy - enteropathy - X-linked (IPEX) syndrome is a severe congenital systemic autoimmune disease characterized by refractory diarrhea, endocrinopathies, cutaneous involvement, and infections.
Features include always present findings: Chronic diarrhea; and very common findings: Increased circulating IgE concentration and Eczematoid dermatitis. 28 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 5 | Low red blood cell count (anemia), Autoimmune thrombocytopenia, Low platelet count (thrombocytopenia) |
Brain and nerves | 3 | Seizure, Enlarged brain ventricles (ventriculomegaly), Global developmental delay |
Skin | 2 | Alopecia, Eczematoid dermatitis |
Lab test results | 2 | Increased circulating IgE concentration, Anti-glutamic acid decarboxylase antibody positivity |
Hormones | 2 | Type I diabetes mellitus, Hypothyroidism |
Digestive system | 2 | Liver inflammation (hepatitis), Chronic diarrhea |
Growth and development | 1 | Failure to thrive |
Bones and joints | 1 | Joint inflammation (arthritis) |
Kidneys and urinary system | 1 | Glomerulonephritis |
Muscles | 1 | Villous atrophy |
Age of onset: infancy.
IPEX syndrome is generally considered to be a syndrome of neonatal enteropathy and neonatal polyendocrinopathy found in males. In a large natural history study, 95% of individuals with IPEX syndrome had disease onset in the first year of life, with 50% by age one month . However, atypical clinical presentation has been reported with onset later in childhood . Presentation. The most common presentation of IPEX syndrome is malabsorption with severe watery diarrhea, type 1 insulin-dependent diabetes mellitus, thyroiditis, and dermatitis in males younger than age one year. This disorder is frequently accompanied by other autoimmune phenomena. Males with a somewhat milder/atypical disease phenotype can present at older ages .
Source: GeneReviews — "IPEX Syndrome"
FOXP3 encodes forkhead box P3 (431 aa). Transcriptional regulator which is crucial for the development and inhibitory function of regulatory T-cells (Treg). Highest expression in Testis (2.8 TPM) and Spleen (2.7 TPM).
Immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome is caused by mutations in the FOXP3 gene on chromosome X.
The FOXP3 protein participates in RUNX1 and FOXP3 bind the IFNG gene, FOXP3 gene expression is stimulated by RUNX1:CBFB, and RUNX1 and FOXP3 bind the RSPO3 gene promoter pathways.
FOXP3 is classified as a druggable target (Transcription Factor category) with score 0.7.
There are currently no genotype-phenotype correlations. The same genotype can present with variable severity in different individuals, even within the same family . Furthermore, it is difficult to correlate the type of pathogenic variant and outcome. Loss-of-function variants (frameshift) predicted to be missing the forkhead domain have been described in fetal-onset and nonviable infants, but also in individuals who survive into adolescence . Within the cohort of affected individuals with extremely early onset of symptoms (24 hours of life), the types of variants and their position within the gene vary . FOXP3 missense variants can result in FOXP3 expression resulting in normal regulatory T cell (Treg) enumeration by flow cytometry but abnormal Treg function .
Source: GeneReviews — "IPEX Syndrome"
The term "IPEX" is an acronym for immune dysregulation, polyendocrinopathy, enteropathy, X-linked.
IPEX syndrome should be suspected in males with the following clinical triad, family history, and suggestive laboratory findings.
Clinical triad
Source: GeneReviews — "IPEX Syndrome"
IPEX syndrome is classified by the International Union of Immunological Societies (IUIS) as an inborn error of immunity that results in immune dysregulation due to absent or defective regulatory T cells (Treg) . Autoimmunity is the primary clinical manifestation. Among the ten unique disorders with Treg dysfunction, LRBA deficiency, CTLA4 haploinsufficiency, CD25 deficiency, FERMT1 deficiency, BACH2 deficiency, IKAROS GOF (gain of function), and CD122 deficiency have the most clinical overlap with IPEX syndrome . Other inborn errors of immunity without Treg dysfunction, including immune dysregulation with colitis, can also mimic IPEX syndrome . In addition to immune dysregulation disorders, monogenic forms of neonatal diabetes that are clinically evident soon after birth can present similarly to IPEX syndrome. These conditions are most commonly associated with pancreatic defects and lack autoimmune manifestations . Similarly, intrinsic defects of the intestinal microvilli have clinical presentations consistent with enteropathy with malabsorption and diarrhea but are not immune mediated . See for these and other considerations in the differential diagnosis. Table 2. Syndromes of Known Genetic Cause to Consider in the Differential Diagnosis of IPEX Syndrome
Gene(s)/ Genetic Mechanism | Disorder | MOI | Additional Key Features |
|---|---|---|---|
BACH2 | BACH2-related immunodeficiency autoimmunity2 | AD | Enteropathy, chronic variable immunodeficiency |
Genetic testing for FOXP3 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome. An additional 2 compounds hold orphan drug designation.
While no drugs are FDA-approved specifically for immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome, some of the following designated compounds may be used off-label in clinical practice. Treatment decisions should be made in consultation with a specialist familiar with this condition.
The following drugs have received orphan drug designation from the FDA for immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome. Orphan designation reflects regulatory interest and does not indicate approval for treatment.
Brand Name | Generic Name | Sponsor | Designated | Exclusivity End | Designation Status |
|---|---|---|---|---|---|
autologous CD34+ hematopoietic stem and progenitor cells modified ex-vivo with a lentiviral vector which restores endogenously regulated expression of FOXP3 | autologous CD34+ hematopoietic stem and progenitor cells modified ex-vivo with a lentiviral vector which restores endogenously regulated expression of FOXP3 | ImmunoVec | 2021 | — | Designated |
autologous patients¿ CD4+ T cells that have been subjected to lentivirus mediated gene transfer of healthy FOXP3 | autologous patients¿ CD4+ T cells that have been subjected to lentivirus mediated gene transfer of healthy FOXP3 | Stanford University | 2020 | — | Designated |
To establish the extent of disease in an individual diagnosed with IPEX syndrome, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
IPEX Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Nutrition assessment incl serum electrolyte levels, calcium, magnesium, zinc, serum albumin, pre-albumin | The majority of persons will require discontinuation of enteral feeding initiation of TPN.
Hepatic assessment | Incl serum AST, ALT, GGT, total bilirubin, assessment of hepatic autoantibodies
Small bowel biopsy incl specific staining for Treg | To assess response to treatment
| • Glucose tolerance test
Hemoglobin A1c
Thyroid function tests
Autoantibodies to pancreatic islet antigens thyroid antigens
|
| Eval of any skin lesions | Should incl biopsy for histology
Immune activation (e.g., by immunizations or severe infections) has been reported to cause worsening or exacerbation of disease symptoms . It is generally best practice to withhold immunizations until after HSCT, if possible.
Source: GeneReviews — "IPEX Syndrome"
HSCT carries the risk of significant morbidity and mortality, and suitable donors are not always available. For these and other reasons, IPEX syndrome is an excellent candidate for treatment with gene therapy. However, one major hurdle is the need to regulate the expression of FOXP3 on mature T cells; thus, hematopoietic stem cells are not the ideal target for gene delivery. An alternative approach has been to convert CD4+ T cells from individuals with IPEX syndrome using lentivirus vectors that carry normal FOXP3. Lentiviral delivery of exogenous FOXP3 cDNA is accomplished under the constitutive promoter to achieve conversion of FOXP3 mutated cells to normal functioning regulatory T cells (Treg) in vivo.
Source: GeneReviews — "IPEX Syndrome"
2 trials found
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended.
Table 5.
IPEX Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency
| Monitor growth, nutritional intake, stooling patterns. | At each visit
| • Glucose tolerance test
Hemoglobin A1c
Thyroid function tests
| Every 3-6 mos
| Skin exam | At each visit
| • Complete blood count
BUN, creatinine
Urinalysis
Serum AST, ALT
| Every 3-6 mos
ALT = alanine transferase; AST = aspartate transferase; BUN = blood urea nitrogen
Source: GeneReviews — "IPEX Syndrome"
Phenotype severity distribution: 1 always present feature, 2 very common features, 6 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
2 clinical trials registered, 2 recruiting. Interventions under study include biologic therapy. Pipeline includes 1 PHASE2, 1 PHASE1. Research is primarily sponsored by academic and government institutions.
25 publications have been identified in PubMed for immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome. Research spans Case Report / Case Series (52%), Review / Meta-Analysis (16%), and Basic Science / Preclinical (12%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 13 | 52% |
Research summaries | 4 | 16% |
Laboratory research | 3 | 12% |
New treatment approaches | 3 | 12% |
Disease patterns and progression | 2 | 8% |
Yang J (2026). [PMID: 41653277](https://pubmed.ncbi.nlm.nih.gov/41653277/). *Journal of clinical immunology*. [Basic Science / Preclinical]
Lacombe V (2026). [PMID: 40945967](https://pubmed.ncbi.nlm.nih.gov/40945967/). *La Revue de medecine interne*. [Case Report / Case Series]
Fiumara M (2026). [PMID: 41175032](https://pubmed.ncbi.nlm.nih.gov/41175032/). *Current opinion in rheumatology*. [Case Report / Case Series]
Tambralli A (2025). [PMID: 41178709](https://pubmed.ncbi.nlm.nih.gov/41178709/). *The Journal of clinical investigation*. [Basic Science / Preclinical]
Yaz I (2025). [PMID: 41117878](https://pubmed.ncbi.nlm.nih.gov/41117878/). *Journal of clinical immunology*. [Gene Therapy / Novel Therapeutics]
Rana G (2025). [PMID: 40905972](https://pubmed.ncbi.nlm.nih.gov/40905972/). *Rheumatology international*. [Review / Meta-Analysis]
Lee HW (2025). [PMID: 41078208](https://pubmed.ncbi.nlm.nih.gov/41078208/). *Clinical laboratory*. [Case Report / Case Series]
Lorenzini T (2025). [PMID: 40977713](https://pubmed.ncbi.nlm.nih.gov/40977713/). *Frontiers in immunology*. [Case Report / Case Series]
Costa A (2025). [PMID: 39820409](https://pubmed.ncbi.nlm.nih.gov/39820409/). *Annals of hematology*. [Case Report / Case Series]
Szczawińska-Popłonyk A (2025). [PMID: 41111099](https://pubmed.ncbi.nlm.nih.gov/41111099/). *Immunologic research*. [Review / Meta-Analysis]
Data assembled from 10 of 12 sources · Last updated Sep 20, 2026, 5:51 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
CTLA4 |
CTLA4 haploinsufficiency (autoimmune lymphoproliferative syndrome, type V) (OMIM 616100) |
AD |
Enteropathy, autoimmune cytopenias, autoimmune thyroiditis |
FERMT1 | FERMT1 deficiency | AR | Gingivitis, periodontitis, mucosal inflammation |
IKZF1 | IKAROS GOF (OMIM 616873) | AD | Low Treg numbers, immune deficiency, autoimmune disease; Distinguished from IPEX syndrome by low B cell numbers3 |
IL2RA | CD25 deficiency (OMIM 606367) | AR | Identified in 3 persons w/IPEX syndrome-like clinical phenotype. |
Source: GeneReviews — "IPEX Syndrome"
| • Serum IgG, IgM, IgA, IgE concentrations
Lymphocyte enumeration by flow cytometry
Lymphocyte response to mitogens
| Serum immunoglobulins, lymphocyte enumeration, mitogen proliferation to assess cellular immune reconstitution following HSCT
| • Complete blood count differential
Coombs test
Eval of autoimmune hypercoagulability (anti-phospholipid antibodies, lupus anticoagulant)
|
| • BUN, creatinine
Urinalysis
|
| By genetics professionals1 | To inform affected persons their families re nature, MOI, impl...
Source: GeneReviews — "IPEX Syndrome"
AI-curated news mentioning immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome
Updated Sep 1, 2026
Novartis has paused multiple studies of its CAR T candidate following three patient deaths linked to immune effector cell-associated hemophagocytic syndrome. Bristol Myers Squibb also halted some CAR T trials due to observed inflammatory events, raising safety concerns in the CAR T therapy landscape.
A recent case report and systematic review highlight the occurrence of immune reconstitution inflammatory syndrome associated with non-HIV Pneumocystis jirovecii pneumonia. This research adds to the understanding of the syndrome's implications in patients recovering from Pneumocystis infections.
A recent study published in PubMed explores the landscape of somatic mutations in a large cohort of Chinese patients with immune dysregulations. This research provides insights into the genetic factors contributing to these conditions, potentially guiding future therapeutic strategies.
A case report details the successful resection of laryngeal Kaposi's sarcoma triggered by immune reconstitution inflammatory syndrome, utilizing preoperative arterial embolization. This case highlights a novel approach in managing this rare condition.