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A primary immunodeficiency disease in which the cause of the disease is a mutation in PIK3R1 gene. It is characterized by infantile or childhood onset of recurrent bacterial respiratory tract infections, lymphoproliferation, variable antibody deficiency (sometimes with hyper IgM), chronic viral infection (EBV, CMV), and autoimmunity.
Features include always present findings: Decreased naive CD4+ T cell proportion, Decreased naive CD8+ T cell proportion, Recurrent bacterial infections, and Decreased circulating IgG concentration and others; and common findings: Recurrent lower respiratory tract infections, Increased circulating IgM level, and Increased transitional B cell proportion. 24 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 7 |
PIK3R1 function has not been fully characterized.
Immunodeficiency 36 with lymphoproliferation is associated with mutations in the PIK3R1 gene on chromosome 5.
No clinically relevant genotype-phenotype correlations have been identified to date.
No consensus clinical diagnostic criteria for activated PI3K delta syndrome (APDS) have been published.
APDS types 1 (APDS1) and 2 (APDS2) are characterized by a spectrum of clinical manifestations primarily involving the immune system, leading to increased susceptibility to infections, autoimmunity, and lymphoproliferation. APDS should be considered in probands with the following suggestive findings:
Clinical findings
Source: GeneReviews —
No approved treatments are currently available for immunodeficiency 36 with lymphoproliferation. The disease remains an area of unmet medical need.
No clinical practice guidelines for activated PI3K delta syndrome (APDS) have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with APDS, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 8. Activated PI3K Delta Syndrome: Recommended Surveillance
No clinical trials have been registered for immunodeficiency 36 with lymphoproliferation.
198 publications have been identified in PubMed for immunodeficiency 36 with lymphoproliferation. Research spans Epidemiology / Natural History (36%), Review / Meta-Analysis (19%), and Basic Science / Preclinical (16%).
Research Type | Count | % of Total |
|---|---|---|
Disease patterns and progression | 72 | 36% |
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 9:39 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
Lungs and breathing | 3 | Recurrent lower respiratory tract infections, Bronchiectasis, Recurrent upper respiratory tract infections |
Growth and development | 2 | Short stature, Growth delay |
Digestive system | 2 | Enlarged spleen (splenomegaly), Chronic diarrhea |
Activated PI3K delta syndrome (APDS) is a rare inborn error of immunity characterized primarily by frequent infections, lymphoproliferation, and autoimmune manifestations. To date, at least 250 individuals have been identified with a pathogenic variant in PIK3CD (for APDS1) or PIK3R1 (for APDS2) [, , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. It is important to note that the severity and presence of these clinical findings can vary widely among affected individuals. Some may present with mild symptoms, while others experience severe manifestations that significantly impact quality of life. The variability within the spectrum of APDS highlights the importance of individualized care and management strategies. Table 2. Activated PI3K Delta Syndrome: Frequency of Select Features
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Sinopulmonary infections | 96%-100% | Severe /or recurrent |
Bronchiectasis | 18%-60% | — |
Lymphoproliferation | 71%-89% | Incl splenomegaly, hepatomegaly, lymphadenopathy |
Growth delays | 45%-62% | — |
Herpes virus infections | 36%-49% | Persistent, severe, /or recurrent |
Enteropathy | 25%-51% | Lymphoid aggregates may be seen on histology. |
Lymphoma | 12%-28% | Particularly early onset |
Autoimmune cytopenias | 19%-30% | May be refractory to conventional therapy |
Autoimmune autoinflammatory disease | 17%-42% Neurodevelopmental delay | 19%-31% |
Source: GeneReviews — "Activated PI3K Delta Syndrome"
Source: GeneReviews — "Activated PI3K Delta Syndrome"
Penetrance in APDS is believed to approach 100%. However, there is considerable clinical variability, with presentations ranging from nearly asymptomatic with mild laboratory findings to severe manifestations of the disease .
Source: GeneReviews — "Activated PI3K Delta Syndrome"
Table 4. Genes of Interest in the Differential Diagnosis of Activated PI3K Delta Syndrome
Gene(s) | Disorder | MOI | Features of Disorder |
|---|---|---|---|
AICDA | Hyper IgM syndrome 2 (HIGM2) (OMIM 605258) | AR | Recurrent infections, hypogammaglobulinemia, IgM, lymphoid hyperplasia |
TNFRSF13C | Common variable immunodeficiency (CVID) (OMIM PS607594) | ARAD | Recurrent infections, hypogammaglobulinemia, autoimmunity, lymphoproliferation |
CD40 | Hyper IgM syndrome 3 (HIGM3) (OMIM 606843) | AR | Recurrent infections, hypogammaglobulinemia, IgM, lymphoid hyperplasia |
CD40LG | X-linked hyper IgM syndrome (HIGM1) | XL SH2D1A XIAP | — |
X-linked lymphoproliferative disease | XL | Immune dysregulation | More severe EBV infections |
UNG | Hyper IgM syndrome 5 (HIGM5) (OMIM 608106) | AR | Recurrent infections |
CTLA4 | CTLA4 haploinsufficiency (OMIM 616100) | AD | Recurrent infections, autoimmunity, lymphoproliferation |
LRBA | LRBA deficiency (OMIM 614700) | AR | — |
STAT3 | Autoimmune disease, multisystem, infantile-onset, 1 (OMIM 615952) | AD1 | T helper 17 cells phosphorylated STAT3 AD = autosomal dominant; APDS = activated PI3K delta syndrome; AR = autosomal recessive; CTLA-4 = cytotoxic T-lymphocyte protein 4; EBV = Epstein-Barr virus; MOI = mode of inheritance; STAT3 = signal transducer and activator of transcription 3; XL = X-linked 1. |
Source: GeneReviews — "Activated PI3K Delta Syndrome"
Genetic testing for PIK3R1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for immunodeficiency 36 with lymphoproliferation has been reported in the published literature.
Table 5.
Activated PI3K Delta Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Comprehensive physical exam | To assess for presence of lymphadenopathy, splenomegaly, hepatomegaly
| • Detailed review of infection history
EBV, CMV, HSV PCR in blood relevant serologic testing
JCV PCR if patient received rituximab1
| To identify patterns indicative of immunodeficiency
| • CBC w/differential
Immunoglobulin levels (IgG, IgA, IgM, IgE)
Lymphocyte subset analysis incl nave/memory T cells B-cell subsets
Vaccine-specific antibody titers
| To evaluate immune function identify immunodeficiency
| Imaging studies (e.g., ultrasound, CT, MRI) | To detect organomegaly lymphadenopathy
B-cell clonality studies by V-beta spectratyping
LDH, EBV/CMV PCR
| To evaluate for susceptibility to lymphoproliferative disorders
| • Spirometry
Consider chest CT
| To detect underlying respiratory issues
| • Endosc...
Source: GeneReviews — "Activated PI3K Delta Syndrome"
There are currently two clinical trials evaluating the safety and efficacy of leniolisib in individuals age one to six years (NCT05693129) and four to 11 years old (NCT05438407). Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Activated PI3K Delta Syndrome"
View trials for immunodeficiency 36 with lymphoproliferation
Evaluation |
|---|
Frequency |
|---|
Infections | Blood/sputum cultures | As needed for symptoms EBV/CMV/HSV PCR |
Lymphoproliferative disorders | CBC, B-cell counts, LDH | Every 6-12 months Abdominal US |
Autoimmune disorders | ANA testing, TSH, TPO | Annually |
Respiratory issues | Regular pulmonary function tests incl spirometry | Every 12 mos (to monitor lung health intervene early if issues are detected) Chest CT |
Gastrointestinal manifestations | Colonoscopy | Symptomatically as needed to identify manage gastrointestinal involvement Liver ultrasound studies |
Developmental | Psychiatric assessment | As needed ANA = antinuclear antibody; CMV = cytomegalovirus; EVB = Epstein-Barr virus; HSV= herpes simplex virus; LDH = lactate dehydrogenase; PCR = polymerase chain reaction; TSH = thyroid-stimulating hormone; TPO = thyroid peroxidase |
Source: GeneReviews — "Activated PI3K Delta Syndrome"
Phenotype severity distribution: 7 always present features, 3 common features.
Research summaries |
38 |
19% |
Laboratory research | 32 | 16% |
Clinical study results | 27 | 14% |
Patient case studies | 14 | 7% |
Testing and diagnosis research | 11 | 6% |
New treatment approaches | 4 | 2% |
Chirila CB (2026). [PMID: 42002600](https://pubmed.ncbi.nlm.nih.gov/42002600/). *Sci Rep*. [Gene Therapy / Novel Therapeutics]
Bhattad S (2026). [PMID: 42169679](https://pubmed.ncbi.nlm.nih.gov/42169679/). *J Hum Immun*. [Case Report / Case Series]
Graafen L (2026). [PMID: 41831046](https://pubmed.ncbi.nlm.nih.gov/41831046/). *J Clin Immunol*. [Diagnostic / Biomarker]
Ruffieux Y (2026). [PMID: 41689274](https://pubmed.ncbi.nlm.nih.gov/41689274/). *Clin Infect Dis*. [Epidemiology / Natural History]
Nyame P (2026). [PMID: 41832744](https://pubmed.ncbi.nlm.nih.gov/41832744/). *Reviews in medical virology*. [Review / Meta-Analysis]
Kim S (2026). [PMID: 41978926](https://pubmed.ncbi.nlm.nih.gov/41978926/). *J Korean Med Sci*. [Epidemiology / Natural History]
Pecora V (2026). [PMID: 40525486](https://pubmed.ncbi.nlm.nih.gov/40525486/). *Journal of cutaneous medicine and surgery*. [Case Report / Case Series]
Ariue B (2026). [PMID: 41057108](https://pubmed.ncbi.nlm.nih.gov/41057108/). *Ann Allergy Asthma Immunol*. [Diagnostic / Biomarker]
Anderson K (2026). [PMID: 40996698](https://pubmed.ncbi.nlm.nih.gov/40996698/). *AIDS*. [Epidemiology / Natural History]
Ferre AL (2026). [PMID: 41024436](https://pubmed.ncbi.nlm.nih.gov/41024436/). *Journal of immunology (Baltimore, Md. : 1950)*. [Basic Science / Preclinical]