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Any Coffin-Siris syndrome in which the cause of the disease is a mutation in the SMARCA4 gene.
Features include always present findings: Short phalanx of the 5th toe, Hypertrichosis, Intellectual disability, and Global developmental delay and others; and very common findings: Thick lower lip vermilion, Microcephaly, and Long eyelashes. 45 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Head and neck | 6 | Everted upper lip vermilion, Coarse facial features, Thin upper lip vermilion |
Brain and nerves | 5 | Seizure, Intellectual disability, Absent speech |
Heart and blood vessels | 3 | Ventricular septal defect, Mitral atresia, Atrial septal defect |
Bones and joints | 3 | Prominent interphalangeal joints, Sideways curvature of the spine (scoliosis), Delayed skeletal maturation |
Growth and development | 2 | Short stature, Intrauterine growth retardation |
Arms and legs | 2 | Short phalanx of the 5th toe, Short 5th finger |
Eyes | 2 | Ptosis, Visual impairment |
Ears | 1 | Hearing loss (hearing impairment) |
Muscles | 1 | Low muscle tone (hypotonia) |
Blood and immune system | 1 | Recurrent infections |
Lungs and breathing | 1 | Pulmonary artery atresia |
Digestive system | 1 | Feeding difficulties |
Age of onset: at birth.
Rhabdoid tumor predisposition syndrome (RTPS) is characterized by a markedly increased risk of developing rhabdoid tumors. Rhabdoid tumors are rare and highly aggressive malignant tumors occurring predominantly in infants and children younger than age three years. The term rhabdoid is derived from the histologic resemblance of tumor cells to rhabdomyoblasts. Rhabdoid tumors are characterized by heaps of cells with an eccentric nucleus and prominent nucleoli, abundant cytoplasm with eosinophilic inclusion bodies, and distinct cellular membranes.
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
SMARCA4 function has not been fully characterized.
Intellectual disability, autosomal dominant 16 is associated with mutations in the SMARCA4 gene on chromosome 19.
No genotype-phenotype correlations have been identified.
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
SMARCB1. Penetrance of SMARCB1-related RTPS may be extremely high (90% by age 5 years) . However, these data may be based on selection bias, and larger series of systematically screened trios (parents and affected offspring) are needed to accurately define penetrance. Rarely a SMARCB1 disease-causing variant is inherited from an unaffected parent or a parent with late-onset or undiagnosed RTPS . Germline mosaicism may account for up to half of the families with sibs affected by RTPS. SMARCA4. Even less is known about the penetrance of SMARCA4-related RTPS. Penetrance is incomplete, as most individuals with SMARCA4-related RTPS have inherited the disease-causing variant from an unaffected, healthy parent [; ; ; ; EU-RHAB Author, personal communication].
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
Rhabdoid tumor predisposition syndrome (RTPS) should be suspected in an individual with any of the following clinical or laboratory features. Clinical features. Any rhabdoid tumor with the following features is particularly suspicious:
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
Demonstration of loss of the SMARCB1 or SMARCA4 protein (in tumor tissue) as a result of inactivation or loss of one allele of SMARCB1 or SMARCA4 (tumor tissue and constitutional samples) may suggest the diagnosis of rhabdoid tumor predisposition syndrome (RTPS). For example, an individual with a constitutional deletion of SMARCB1 and an epithelioid sarcoma was reported by . In such cases the absence of a clinical and family history of rhabdoid tumor(s) distinguishes these individuals from those with RTPS. Table 3. Hereditary Disorders in the Differential Diagnosis of Rhabdoid Tumor Predisposition Syndrome
Gene(s) | Disorder | MOI | Key Features | Additional Features / Comment |
|---|---|---|---|---|
Li-Fraumeni syndrome | AD | Cancer predisposition syndrome assoc w/high risk for diverse spectrum of childhood- adult-onset malignancies | SMARCB1- or SMARCA4-deficient malignant brain tumors w/complex copy number alterations germline TP53 variants1 ANKRD11 (or 16q24.3 deletion incl ANKRD11) | — |
KBG syndrome |
Genetic testing for SMARCA4 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for intellectual disability, autosomal dominant 16 has been reported in the published literature.
No approved treatments are currently available for intellectual disability, autosomal dominant 16. The disease remains an area of unmet medical need.
To establish the extent of disease and needs of an individual diagnosed with rhabdoid tumor predisposition syndrome (RTPS), the following are recommended:
For all individuals (regardless of age), a whole-body MRI should be offered at diagnosis.
Individuals who have not yet developed a rhabdoid tumor should be referred to a pediatric oncologist or tumor surveillance program.
In those with a tumor, prior to planning therapy consider consulting a radiologist to assist in the selection and review of subsequent imaging, to evaluate the size and location of the primary tumor, and to evaluate for the presence of synchronous tumors and/or metastases (whole-body MRI).
For individuals with atypical teratoid/rhabdoid tumor (AT/RT), examine cerebrospinal fluid and determine classification according to Chang staging .
Refer to genetic counseling to inform affected individuals and their families about the nature, mode of inheritance, and implications of RTPS to facilitate medical and personal decision making.
Because of the rarity of RTPS, standards for management are evolving. Most individuals are treated using intensive multimodal therapeutic strategies combining surgery, radiotherapy, and chemotherapy according to institutional preference:
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
Limit exposure to DNA-damaging agents including radiation (e.g., x-ray, CT, external beam radiotherapy), tobacco, UV light, and chemotherapy to minimize the lifetime risk of developing late-onset secondary cancers. Imaging tests utilizing radioactive compounds should be used only if absolutely necessary for essential health care. This recommendation is based on the increased risk of adverse effects in young developing children, not increased risk as a result of a SMARCA4 or SMARCB1 pathogenic variant.
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
The following clinical trials are currently recruiting unless otherwise indicated. Table 4. Overview of Clinical Trials in Pediatric Malignant Rhabdoid Tumors Including Rhabdoid Tumor Predisposition Syndrome
Inhibitor Group | Inhibitor | ClinicalTrials.govNCT Number | Phase | StudyCompletion |
|---|---|---|---|---|
inhibitors | CUDC-907 | NCT02909777 | 1 | 2022 |
View trials for intellectual disability, autosomal dominant 16
Surveillance guidelines for individuals with RTPS have been provided by , , and . Birth to age six months. Monthly (or at least every 2-3 months) thorough clinical examination including neurologic examination, ultrasound of the abdomen and neck, and head ultrasound or brain and spine MRI or whole-body MRI (imaging modality is based on resources and need for anesthesia). Clinically suspicious regions should initially be evaluated by ultrasound. Note: This intensive surveillance may only be possible in a research setting; recommendations are based on the high risk of tumors within this age group. Age seven months to 18 months. Every two to three months, thorough clinical examination including neurologic examination and ultrasound of the abdomen and neck; consider brain and spine MRI. Clinically suspicious regions should initially be evaluated by ultrasound. Note: Whole-body MRI resolution may not be sufficient for brain structures; MRI of the central nervous system will then need to be done separately. Age 19 months to five years. Every three months, thorough clinical examination including neurologic examination, ultrasound of the abdomen and neck, and brain and spine MRI. Clinically suspicious regions should initially be evaluated by ultrasound. After age five years the risk of developing a new rhabdoid tumor dramatically decreases . It remains worthwhile, however, to screen individuals with RTPS for other manifestations (e.g., schwannomas, SCCOHT).
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
Phenotype severity distribution: 5 always present features, 3 very common features, 14 common features.
No clinical trials have been registered for intellectual disability, autosomal dominant 16.
52 publications have been identified in PubMed for intellectual disability, autosomal dominant 16. Research spans Case Report / Case Series (52%), Review / Meta-Analysis (17%), and Other (10%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 27 | 52% |
Research summaries | 9 | 17% |
Other research | 5 | 10% |
Laboratory research | 5 | 10% |
Testing and diagnosis research | 3 | 6% |
Disease patterns and progression | 3 | 6% |
Al-Shahrani H (2026). [PMID: 41897354](https://pubmed.ncbi.nlm.nih.gov/41897354/). *Biomolecules*. [Other]
Ekici B (2026). [PMID: 41952703](https://pubmed.ncbi.nlm.nih.gov/41952703/). *Surg Neurol Int*. [Case Report / Case Series]
Harripaul R (2026). [PMID: 41865132](https://pubmed.ncbi.nlm.nih.gov/41865132/). *Sci Rep*. [Basic Science / Preclinical]
Chu S (2026). [PMID: 42168980](https://pubmed.ncbi.nlm.nih.gov/42168980/). *BMC Pediatr*. [Case Report / Case Series]
Ates K (2026). [PMID: 42204957](https://pubmed.ncbi.nlm.nih.gov/42204957/). *Dev Neurobiol*. [Review / Meta-Analysis]
Chesneau B (2026). [PMID: 41568967](https://pubmed.ncbi.nlm.nih.gov/41568967/). *Clin Genet*. [Other]
Wang Y (2026). [PMID: 42015706](https://pubmed.ncbi.nlm.nih.gov/42015706/). *Zhongguo Dang Dai Er Ke Za Zhi*. [Case Report / Case Series]
Shah SJ (2026). [PMID: 41971929](https://pubmed.ncbi.nlm.nih.gov/41971929/). *AME Case Rep*. [Case Report / Case Series]
Fabre A (2026). [PMID: 42156711](https://pubmed.ncbi.nlm.nih.gov/42156711/). *Transl Psychiatry*. [Diagnostic / Biomarker]
Kolkiran A (2026). [PMID: 41795723](https://pubmed.ncbi.nlm.nih.gov/41795723/). *Eur J Pediatr*. [Case Report / Case Series]
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 5:19 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
AD
Macrodontia (esp of upper central incisors), characteristic facial features, short stature, DD/ID, behavioral issues |
Paratesticular rhabdoid tumor2 BAP1 |
— |
BAP1 tumor predisposition syndrome | AD | risk for a number of cancers a specific skin lesion, BAP1-inactivated melanocytic tumor | Meningioma, particularly a high-grade rhabdoid subtype, may be assoc w/BAP1-TPDS.3 DICER1 | — |
DICER1 tumor predisposition | AD | risk for PPB, pulmonary cysts, thyroid gland neoplasia, ovarian tumors incl sex cord-stromal tumors (e.g., embryonal rhabdomyosarcoma), cystic nephroma | ERMS of the cervix most commonly occurs in pubertal postpubertal adolescent girls young women. | — |
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"
Vorinostat (SAHA)
NCT04308330 |
1 |
2022 |
— |
Tazemetostat | NCT02601937 | 1 | 2022 | — |
Tazemetostat | NCT03155620 | 2 | 2027 | — |
Tazemetostat | NCT03213665 | 2 | 2024 | — |
Decitabine + Pembrolizumab | NCT03445858 | 1 | 2025 Cell cycle | — |
inhibitors | Abemaciclib | NCT02644460 | 1 | 2022 |
Palbociclib | NCT03526250 | 2 | 2025 | — |
Palbociclib | NCT03709680 | 1 | 2025 | — |
Abemaciclib | NCT04238819 | 1 | 2023 Kinase | — |
inhibitors | Alisertib | NCT02114229 | 2 | 2027 |
Sirolimus | NCT02574728 | 2 | 2022 | — |
Everolimus + Lenvatinib | NCT03245151 | 1, 2 | 2022 | — |
Adavosertib | NCT02095132 | 1, 2 | 2021 | — |
Regorafenib | NCT02085148 | 1 | 2023 | — |
Neratinib | NCT02932280 | 1,2 | 2024 | — |
Pazopanib | NCT03628131 | 1, 2 | 2025 | — |
Larotrectinib | NCT03834961 | 2 | 2022 | — |
Ponatinib | NCT03934372 | 1, 2 | 2024 | — |
Cabozantinib | NCT02867592 | 2 | 2021 | — |
Cabozantinib | NCT03611595 | 1 | 2021 | — |
Lenvatinib | NCT04447755 | 2 | 2024 Pathway-specific | — |
compounds | Tegavivint | NCT04851119 | 1, 2 | 2028 Immunothe... |
Source: GeneReviews — "Rhabdoid Tumor Predisposition Syndrome"