Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the SYNGAP1 gene.
Features include always present findings: Moderate intellectual disability, Global developmental delay, Low muscle tone (hypotonia), and Motor delay; and very common findings: Delayed speech and language development, Generalized-onset seizure, and Abnormality of pain sensation. 52 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 22 | Bilateral tonic-clonic seizure, Moderate intellectual disability, Loss of previously acquired skills (developmental regression) |
Head and neck | 5 | Microcephaly, Abnormal facial shape, High palate |
Muscles | 3 | Low muscle tone (hypotonia), Brain atrophy, Congenital muscular torticollis |
Eyes | 1 | Strabismus |
Pregnancy and birth | 1 | Congenital muscular torticollis |
Skin | 1 | Cutaneous photosensitivity |
Digestive system | 1 | Feeding difficulties in infancy |
Heart and blood vessels | 1 | Abnormal subarachnoid space morphology |
Arms and legs | 1 | Recurrent hand flapping |
Since the original description of SYNGAP1-related intellectual disability (SYNGAP1-ID) in three individuals , more than 50 affected individuals with detailed clinical information have been reported [, , , , , , , , , , , , , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. Developmental delay and intellectual disability. The great majority of affected children present with developmental delay or intellectual disability that is typically moderate to severe but can be mild. Early motor development is characterized by hypotonia. The average age at walking was 26 months (range: 10.5 months to 5 years). A subset of these children had an ataxic gait that remained stable or improved over time.
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
SYNGAP1 function has not been fully characterized.
Intellectual disability, autosomal dominant 5 is associated with mutations in the SYNGAP1 gene on chromosome 6.
Penetrance is 100%. All individuals with germline pathogenic variants in SYNGAP1 have developmental delay, cognitive dysfunction, intellectual disability, and/or epilepsy.
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
No formal diagnostic criteria have been published for SYNGAP1-related intellectual disability.
SYNGAP1-related intellectual disability (SYNGAP1-ID) should be considered in individuals with developmental delay or intellectual disability with or without:
Generalized epilepsy;
and/or
Autism spectrum disorder (ASD).
The diagnosis of SYNGAP1-ID is established in a proband with developmental delay (DD) or intellectual disability (ID) in whom molecular genetic testing identifies either:
A heterozygous pathogenic (or likely pathogenic) variant in SYNGAP1 (~89%);
or
A deletion of 6p21.3 (~11%).
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
The phenotype associated with SYNGAP1-related intellectual disability (ID) overlaps with that of other disorders of ID and epileptic encephalopathy. Most genes known to be associated with ID (see OMIM Autosomal Dominant Intellectual Developmental Disorder Phenotypic Series) and epileptic encephalopathy (see OMIM Epileptic Encephalopathy, Early Infantile Phenotypic Series) if compatible with walking should be included in the differential diagnosis.
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
Genetic testing for SYNGAP1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for intellectual disability, autosomal dominant 5 has been reported in the published literature.
No approved treatments are currently available for intellectual disability, autosomal dominant 5. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SYNGAP1-related intellectual disability, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended. Table 2. Recommended Evaluations Following Initial Diagnosis in Individuals with SYNGAP1-Related Intellectual Disability
System/Concern | Evaluation | Comment |
|---|---|---|
Eyes | Ophthalmologic eval | Evidence of strabismus Gastrointestinal/ |
Feeding | Baseline eval for reflux /or constipation; assessment for feeding problems | Refer to gastroenterologist /or feeding therapist for treatment if indicated. |
Musculoskeletal | Assessment for hip rotation/dysplasia, kyphoscoliosis, pes planus | — |
Neurologic | Neurologic eval | Incl EEG brain MRI if seizures are suspected Psychiatric/ |
Behavioral | Neuropsychiatric eval | Screen persons age 12 mos for behavior concerns incl sleep disturbances, ADHD, anxiety, /or traits suggestive of ASD. Miscellaneous/ |
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder. Search CURE ID (an FDA website) for information on novel uses of existing drugs for this condition (SYNGAP1 Overview). Note: Any off-label use of drugs should be done at the discretion of the treating physician in conjunction with the affected individual and/or their caregiver and is not endorsed by GeneReviews or the authors of this chapter.
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
View trials for intellectual disability, autosomal dominant 5
Monitor those with seizures as clinically indicated. Assess as needed for anxiety, attention, and aggressive or self-injurious behavior. Monitor developmental progress and educational needs.
Source: GeneReviews — "SYNGAP1-Related Intellectual Disability"
Phenotype severity distribution: 4 always present features, 3 very common features, 20 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for intellectual disability, autosomal dominant 5.
79 publications have been identified in PubMed for intellectual disability, autosomal dominant 5. Research spans Case Report / Case Series (55%), Review / Meta-Analysis (21%), and Epidemiology / Natural History (13%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 42 | 55% |
Research summaries | 16 | 21% |
Disease patterns and progression | 10 | 13% |
Laboratory research | 7 | 9% |
Testing and diagnosis research | 1 | 1% |
Clinical study results | 1 | 1% |
Barakat N (2026). [PMID: 41358577](https://pubmed.ncbi.nlm.nih.gov/41358577/). *Am J Med Genet A*. [Case Report / Case Series]
Donaldson S (2026). [PMID: 42186234](https://pubmed.ncbi.nlm.nih.gov/42186234/). *Arch Clin Neuropsychol*. [Case Report / Case Series]
Ates K (2026). [PMID: 42204957](https://pubmed.ncbi.nlm.nih.gov/42204957/). *Dev Neurobiol*. [Review / Meta-Analysis]
Wang Z (2026). [PMID: 41916888](https://pubmed.ncbi.nlm.nih.gov/41916888/). *Zhonghua Yi Xue Yi Chuan Xue Za Zhi*. [Review / Meta-Analysis]
Wu Y (2026). [PMID: 42183389](https://pubmed.ncbi.nlm.nih.gov/42183389/). *Int J Pediatr*. [Case Report / Case Series]
Laaraje A (2026). [PMID: 41809613](https://pubmed.ncbi.nlm.nih.gov/41809613/). *Sultan Qaboos Univ Med J*. [Case Report / Case Series]
Ünsel-Bolat G (2026). [PMID: 41466099](https://pubmed.ncbi.nlm.nih.gov/41466099/). *Dev Neurobiol*. [Case Report / Case Series]
Xuan X (2026). [PMID: 42091191](https://pubmed.ncbi.nlm.nih.gov/42091191/). *Zhonghua Yi Xue Yi Chuan Xue Za Zhi*. [Case Report / Case Series]
Jo S (2026). [PMID: 41239187](https://pubmed.ncbi.nlm.nih.gov/41239187/). *Clin Genet*. [Case Report / Case Series]
Muhammad A (2026). [PMID: 42046183](https://pubmed.ncbi.nlm.nih.gov/42046183/). *Mol Genet Genomic Med*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 12:51 AM UTC
Patient Advocacy Groups (PAGs) provide support, resources, and community for patients and caregivers.
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Other |
Developmental assessment |
Incl motor, speech-language eval, general cognitive, vocational skills. Consultation w/clinical geneticist /or genetic counselor |
Treatment of Manifestations in Individuals with SYNGAP1-Related Intellectual Disability Manifestation/Concern | Treatment | Considerations/Other |
Strabismus | Standard treatment(s) as recommended by ophthalmologist | — |
Swallowing dysfunction | Nasogastric/gastrostomy feeding may be required for persistent feeding issues. | — |
Constipation | Standard treatment as recommended by gastroenterologist | Gastroenterology consultation, if severe |
Hip rotation/dysplasia, kyphoscoliosis, pes planus | Standard treatment as recommended by orthopedist | Orthopedic consultation may be considered. |
Epilepsy | Standardized treatment w/ASMs by experienced neurologist | To date, no guidelines on choice of specific ASMs; Anecdotal reports of improved seizure control w/ketogenic diet in some persons Education of parents regarding common seizure presentations is appropriate. |