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Intellectual disability-sparse hair-brachydactyly syndrome is a very rare condition of unknown etiology consisting of short stature, hypotrichosis, brachydactyly with cone-shaped epiphyses, epilepsy and severe mental delay. After the initial delineation of this syndrome by Nicolaides and Baraitser in 1993, only five more patients were published in the literature up to now.
Features include always present findings: Seizure, Intellectual disability, Sandal gap, and Triangular face; and very common findings: Broad philtrum, Anteverted nares, Thick lower lip vermilion, and Wide mouth and others. 78 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 8 | Poor speech, Seizure, Gait ataxia |
Head and neck | 6 | Microcephaly, High, narrow palate, Triangular face |
Growth and development | 5 | Short stature, Mild short stature, Failure to thrive |
Arms and legs | 5 | Long fingers, Long toe, Short phalanx of finger |
Skin | 5 | Excessive wrinkled skin, Eczematoid dermatitis, Preauricular skin tag |
Bones and joints | 4 | Enlarged joints, Prominent interphalangeal joints, Delayed skeletal maturation |
Digestive system | 2 | Constipation, Feeding difficulties |
Muscles | 1 | Low muscle tone (hypotonia) |
Lungs and breathing | 1 | Recurrent respiratory infections |
Blood and immune system | 1 | Recurrent respiratory infections |
SMARC2-related Nicolaides-Baraitser syndrome (SMARC2-NCBRS) is characterized by commonly shared dysmorphic features including sparse scalp hair, prominence of the interphalangeal joints and distal phalanges due to decreased subcutaneous fat, characteristic coarse facial features, microcephaly, seizures, and developmental delay/ intellectual disability. Seizures are of various types and can be difficult to manage. Developmental delay/ intellectual disability is severe in nearly half of affected individuals, moderate in one third, and mild in the remainder. Nearly one third never develop speech or language skills . To date, at least 80 individuals have been identified with a pathogenic variant in SMARCA2 . The following description of the phenotypic features associated with this condition is based on these reports. Table 2. SMARCA2-Related Nicolaides-Baraitser Syndrome: Frequency of Select Features
Finding | % of Persons w/Feature | Comment |
|---|---|---|
Intellectual disability | 100% | Most often in severe range |
SMARCA2 function has not been fully characterized.
Intellectual disability-sparse hair-brachydactyly syndrome is caused by mutations in the SMARCA2 gene on chromosome 9.
No clear clinically relevant genotype-phenotype correlations have been noted; however, all individuals with a pathogenic variant within the C-terminal helicase region of the ATPase domain have severe intellectual disability and epilepsy, a frequency higher than that in individuals with pathogenic variants in other parts of the gene. More than half of all individuals with SMARCA2-NCBRS reported have a pathogenic variant within the C-terminal helicase region .
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
Consensus clinical diagnostic criteria for SMARC2-related Nicolaides-Baraitser syndrome (SMARC2-NCBRS) have not been established.
SMARCA2-NCBRS should be considered in probands with the following clinical and radiographic findings and family history.
Clinical findings
Developmental delay/ intellectual disability (DD/ID), most commonly in the severe range but with some having either mild or moderate DD/ID
Sparse scalp hair
Prominence of the interphalangeal joints and distal phalanges secondary to poor subcutaneous fat distribution (See and .)
Characteristic facial features (see , Facial features) that can be subtle in the newborn period and in early childhood, with coarsening of the face and increased skin wrinkling over time (See .)
Microcephaly
Seizures
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
Genetic disorders of interest in the differential diagnosis of SMARCA2-related Nicolaides-Baraitser syndrome (SMARCA2-NCBRS) are listed in .
Table 3.
Genes of Interest in the Differential Diagnosis of SMARCA2-Related Nicolaides-Baraitser Syndrome
Gene(s) | Disorder | MOI | Features Overlapping w/SMARCA2-NCBRS | Features Distinguishing from SMARCA2-NCBRS
ARID1A
ARID1B
ARID2
DPF2
SMARCA4
SMARCB1
SMARCC2
SMARCE1
SOX4
| Coffin-Siris syndrome (CSS)1 | AD2 | Coarse facial features that can be similar to those in SMARCA2-NCBRS | • Digital findings are particularly helpful in differentiating these disorders: persons w/SMARCA2-NCBRS uniquely have prominent interphalangeal joints do not have hypoplasia of the 5th digits.
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
Genetic testing for SMARCA2 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for intellectual disability-sparse hair-brachydactyly syndrome has been reported in the published literature.
No approved treatments are currently available for intellectual disability-sparse hair-brachydactyly syndrome. The disease remains an area of unmet medical need.
No clinical practice guidelines for SMARCA2-related Nicolaides-Baraitser syndrome (SMARCA2-NCBRS) have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with SMARCA2-NCBRS, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended.
Table 4:
SMARCA2-Related Nicolaides-Baraitser Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Measure growth parameters, incl head circumference | To assess for microcephaly short stature
| Neurologic eval | Consider EEG if seizures are a concern.
| Developmental assessment | • To incl motor, adaptive, cognitive, speech-language eval
Eval for early intervention/ special education
Neurobehavioral/
| Neuropsychiatric eval | For persons age 12 mos: screening for concerns incl behavioral issues /or findings suggestive of ASD
| Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:
Gross motor fine motor skills
Mobility, ADL, need for adaptive devices
Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills)
Gastrointestinal/
| Gastroenterology/ nutrition/ feeding team eval | • To incl eval of aspiration risk nutritional sta...
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
View trials for intellectual disability-sparse hair-brachydactyly syndrome
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 6. SMARCA2-Related Nicolaides-Baraitser Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Eyes | Ophthalmologic eval | Per treating ophthalmologist |
ENT/Mouth | Dental eval | At least every 6 mos after eruption of 1st dentition |
Hearing | Audiologic eval | Annually in childhood OT = occupational therapy; PT = physical therapy |
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"
Phenotype severity distribution: 4 always present features, 5 very common features, 56 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for intellectual disability-sparse hair-brachydactyly syndrome.
238 publications have been identified in PubMed for intellectual disability-sparse hair-brachydactyly syndrome. Research spans Review / Meta-Analysis (28%), Basic Science / Preclinical (28%), and Case Report / Case Series (25%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 66 | 28% |
Laboratory research | 66 | 28% |
Patient case studies | 59 | 25% |
Disease patterns and progression | 25 | 11% |
Testing and diagnosis research | 12 | 5% |
Clinical study results | 7 | 3% |
New treatment approaches | 3 | 1% |
Jost C (2026). [PMID: 41606215](https://pubmed.ncbi.nlm.nih.gov/41606215/). *Eur J Hum Genet*. [Basic Science / Preclinical]
Alyahya YA (2026). [PMID: 41497020](https://pubmed.ncbi.nlm.nih.gov/41497020/). *Ann Med Surg (Lond)*. [Case Report / Case Series]
Zhang K (2026). [PMID: 41591480](https://pubmed.ncbi.nlm.nih.gov/41591480/). *Acta Diabetol*. [Case Report / Case Series]
Parisi MA (2026). [PMID: 41883813](https://pubmed.ncbi.nlm.nih.gov/41883813/). *Ther Adv Rare Dis*. [Review / Meta-Analysis]
Trofimovs J (2026). [PMID: 42057464](https://pubmed.ncbi.nlm.nih.gov/42057464/). *Cancer Med*. [Epidemiology / Natural History]
VanSickle EA (2026). [PMID: 41410504](https://pubmed.ncbi.nlm.nih.gov/41410504/). *Am J Med Genet A*. [Review / Meta-Analysis]
Alroqi F (2026). [PMID: 41676145](https://pubmed.ncbi.nlm.nih.gov/41676145/). *Front Immunol*. [Case Report / Case Series]
Jans D (2026). [PMID: 41972176](https://pubmed.ncbi.nlm.nih.gov/41972176/). *Front Immunol*. [Review / Meta-Analysis]
Pedullà G (2026). [PMID: 41722179](https://pubmed.ncbi.nlm.nih.gov/41722179/). *Parkinsonism Relat Disord*. [Case Report / Case Series]
Tripathi M (2026). [PMID: 36256770](https://pubmed.ncbi.nlm.nih.gov/36256770/). *Unknown Journal*. [Basic Science / Preclinical]
Data assembled from 8 of 12 sources · Last updated Sep 20, 2026, 8:43 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Sparse hair |
97% |
— |
Prominent interphalangeal joints | 84% | — |
Coarse facies | 80% | — |
Epilepsy | 65% | May be difficult to manage |
Microcephaly | 64% | Most often acquired |
Cryptorchidism in males | 60% | — |
Hypo- or oligodontia | 20% | Frequently requiring surgical extraction Developmental delay (DD) and intellectual disability (ID). Nearly half of affected individuals experience severe DD/ID with particular delays in speech and language development. |
Source: GeneReviews — "SMARCA2-Related Nicolaides-Baraitser Syndrome"