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Junctional epidermolysis bullosa with pyloric atresia is a severe subtype of junctional epidermolysis bullosa (JEB) characterized by generalized blistering at birth and congenital atresia of the pylorus and rarely of other portions of the gastrointestinal tract.
Features include always present findings: Lamina lucida cleavage, Urethrovesical occlusion, Aplasia cutis congenita on trunk or limbs, and Hypoplastic dermoepidermal hemidesmosomes; and very common findings: Congenital pyloric atresia, Abnormal blistering of the skin, Oral mucosal blisters, and Nausea and vomiting and others. 34 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Skin | 6 | Fragile skin, Nail dysplasia, Abnormal blistering of the skin |
Digestive system | 5 | Esophageal atresia, Intractable diarrhea, Nausea and vomiting |
Kidneys and urinary system | 4 | Renal duplication, Renal dysplasia, Blood in the urine (hematuria) |
Pregnancy and birth | 1 | Congenital pyloric atresia |
Muscles | 1 | Joint stiffness present at birth (arthrogryposis multiplex congenita) |
Arms and legs | 1 | Aplasia cutis congenita on trunk or limbs |
Blood and immune system | 1 | Recurrent skin infections |
Age of onset: at birth.
The course of epidermolysis bullosa with pyloric atresia (EB-PA) is usually severe and often lethal in the neonatal period. Most affected children die as neonates due to mucosal erosions and blistering, pyloric stenosis or atresia, respiratory failure, or overwhelming infection. Cutaneous manifestations. Those who survive the neonatal period may have severe blistering with formation of granulation tissue on the skin around the mouth, diaper area, nose, fingers, and toes, and internally around the trachea. However, some affected individuals have little or no blistering later in life.
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
ITGB4 encodes integrin subunit beta 4 (1,822 aa). Integrin alpha-6/beta-4 is a receptor for laminin. Plays a critical structural role in the hemidesmosome of epithelial cells. Is required for the regulation of keratinocyte polarity and motility. Highest expression in Nerve Tibial (362.3 TPM) and Skin Sun Exposed Lower leg (180.1 TPM).
Junctional epidermolysis bullosa with pyloric atresia is associated with mutations in the ITGB4 gene on chromosome 17.
The ITGB4 protein participates in Keratinocyte stem cell differentiates into transit amplifying cell in the basal layer of interfollicular epidermis, Mammary stem cell produces myoepithelial/basal progenitor, and Embryonic ectoderm cell produces mammary stem cell pathways.
ITGB4 is classified as a druggable target (Cell Surface and Druggable Genome categories) with score 0.0.
ITGB4. The most severe cutaneous manifestations are caused by biallelic pathogenic variants that result in a premature termination codon, although pathogenic variants between exon 3 and intron 11 are also associated with a poor prognosis. A more favorable prognosis is typically associated with missense variants and in-frame insertions or deletions. However, missense variants in the plectin-binding region or in cysteine-rich domains are associated with a poor prognosis. Several additional missense variants result in a severe phenotype, such as the recurrent ITGB4 variant , which is common in Hispanic individuals with EB-PA [, , , , ].
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
Epidermolysis bullosa with pyloric atresia (EB-PA) should be suspected in newborns with the following clinical features:
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
In contrast to pyloric stenosis, which presents insidiously with vomiting, pyloric atresia is present at birth and causes complete obstruction of the gastric outlet. The diagnosis of epidermolysis bullosa with pyloric atresia (EB-PA) should be considered in every neonate with pyloric atresia regardless of the degree of skin blistering.
The 2020 classification system names four major types of epidermolysis bullosa (EB). Classification into major type is based on the location of blistering in relation to the dermal-epidermal junction of the skin.
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
Genetic testing for ITGB4 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for junctional epidermolysis bullosa with pyloric atresia. The disease remains an area of unmet medical need.
No clinical practice guidelines for epidermolysis bullosa with pyloric atresia (EB-PA) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with EB-PA, the evaluations (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 5. Recommended Evaluations Following Initial Diagnosis in Individuals with Epidermolysis Bullosa with Pyloric Atresia
System/Concern | Evaluation | Comment |
|---|---|---|
Cutaneous mucosal manifestations | Eval of blister formation sites incl skin oral mucosa | Endoscopy can be traumatic should be avoided if possible. |
Tracheal manifestations | Assess for hoarse cry in infant | May be caused by airway obstruction w/granulation tissue or tracheomalacia1 |
Pyloric atresia | Surgical referral for those w/manifestations of pyloric atresia | Renal ureteral anomalies |
Genetic counseling | By genetics professionals2 | To inform affected persons their families about nature, MOI, implications of EB-PA to facilitate medical personal decision making Family support resources |
Treatment of Manifestations in Individuals with Epidermolysis Bullosa with Pyloric Atresia Manifestation/Concern | Treatment |
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
Most persons with EB-PA cannot use ordinary medical tape or Band-Aids®. EKG leads should be applied without adhesive. Poor-fitting or coarse-textured clothing and footwear should be avoided as they can cause trauma. In general, activities that traumatize the skin should be avoided. Affected individuals who are determined to participate in such activities should be encouraged to find creative ways to protect their skin.
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
Several therapies are being investigated in treatment of junctional epidermolysis bullosa (JEB) (see Junctional Epidermolysis Bullosa, Therapies Under Investigation). There are no therapies under investigation specifically for EB-PA due to the rarity of the condition. The antibiotic gentamicin can induce read-through of premature termination codons. Topical and intravenous gentamicin is being investigated as a treatment for JEB in individuals with LAMA3, LAMB3, and LAMC2 pathogenic variants; it has not been studied in genes associated with EB-PA. Systemic gentamicin has also been studied for treatment of PLEC-related epidermolysis bullosa simplex with muscular dystrophy due to nonsense variants .
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
View trials for junctional epidermolysis bullosa with pyloric atresia
To monitor existing manifestations in survivors, the individual's response to supportive care, and the emergence of new manifestations, the evaluations in are recommended. Table 7. Recommended Surveillance for Individuals with Epidermolysis Bullosa with Pyloric Atresia
System/Concern | Evaluation | Frequency |
|---|---|---|
Skin | Assessment of blisters skin infection | At each visit per dermatologist |
Gastrointestinal | Assessment of gastrointestinal involvement | At each visit Renal ureteral anomalies |
Ocular | Assessment of corneal abnormalities | At each visit Social/Family |
Source: GeneReviews — "Epidermolysis Bullosa with Pyloric Atresia"
Phenotype severity distribution: 4 always present features, 6 very common features, 11 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for junctional epidermolysis bullosa with pyloric atresia.
6 publications have been identified in PubMed for junctional epidermolysis bullosa with pyloric atresia. Research spans Case Report / Case Series (67%) and Review / Meta-Analysis (33%).
Hammoud M (2026). [PMID: 41948702](https://pubmed.ncbi.nlm.nih.gov/41948702/). *Front Pediatr*. [Case Report / Case Series]
Sabharwal K (2025). [PMID: 40033822](https://pubmed.ncbi.nlm.nih.gov/40033822/). *Pediatr Dermatol*. [Review / Meta-Analysis]
Klangjorhor J (2025). [PMID: 41035785](https://pubmed.ncbi.nlm.nih.gov/41035785/). *Int J Genomics*. [Review / Meta-Analysis]
Saleem A (2024). [PMID: 40121655](https://pubmed.ncbi.nlm.nih.gov/40121655/). *J Ayub Med Coll Abbottabad*. [Case Report / Case Series]
Widhiati S (2024). [PMID: 39070921](https://pubmed.ncbi.nlm.nih.gov/39070921/). *JAAD Case Rep*. [Case Report / Case Series]
Wei X (2024). [PMID: 38784139](https://pubmed.ncbi.nlm.nih.gov/38784139/). *Int Med Case Rep J*. [Case Report / Case Series]
Data assembled from 7 of 12 sources · Last updated Sep 20, 2026, 5:42 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Considerations/Other
Mucosal involvement (incl tracheal gastrointestinal) | Decisions about tracheostomy should involve family consider medical condition of infant. | Poor prognosis severe pain warrants discussion w/family hospital ethics committee to determine type of intervention comfort care to provide.1; Consult w/dietitian or nutritionist if there is significant mucosal blistering in mouth preventing adequate oral intake.; Consider placement of gastrostomy. |