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Features include always present findings: Prominent fingertip pads, Short stature, Areolar fullness, and Long palpebral fissure and others; and very common findings: Macrotia, Feeding difficulties in infancy, and Eversion of lateral third of lower eyelids. 50 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 5 | Seizure, Depressed nasal tip, Intellectual disability |
KDM6A encodes lysine demethylase 6A (1,401 aa). Histone demethylase that specifically demethylates 'Lys-27' of histone H3, thereby playing a central role in histone code. Highest expression in Ovary (25.4 TPM) and Uterus (24.0 TPM).
Kabuki syndrome 2 is caused by mutations in the KDM6A gene on chromosome X.
The KDM6A protein participates in KDM6A (UTX) demethylates histone H3 trimethyllysine-27 (H3K27me3), KDM6A, KDM6B, KDM7A demethylate Me2K28-histone H3, and KDM6A, KDM6B, KDM7A demethylate Me3K28-histone H3 pathways.
KDM6A is classified as a druggable target (Clinically Actionable and Enzyme categories) with score 10.4.
Consensus clinical diagnostic criteria for Kabuki syndrome (KS) have been published .
KS should be suspected in individuals with any combination of the five cardinal manifestations as defined by , specific structural anomalies, and/or functional differences.
Cardinal manifestations
1 Typical facial features:
No approved treatments are currently available for Kabuki syndrome 2. The disease remains an area of unmet medical need.
Comprehensive management guidelines for Kabuki syndrome (KS) were developed in 2010 but have not been updated; these guidelines are available online (pdf). Evaluations Following Initial Diagnosis To establish the extent of disease and the needs of an individual diagnosed with KS, the following evaluations are recommended if they have not already been completed: Table 3. Recommended Evaluations Following Initial Diagnosis in Individuals with Kabuki Syndrome
Table 5. Recommended Surveillance for Individuals with Kabuki Syndrome
System/Concern |
|---|
No clinical trials have been registered for Kabuki syndrome 2.
4 publications have been identified in PubMed for Kabuki syndrome 2. Research spans Case Report / Case Series (50%), Other (25%), and Basic Science / Preclinical (25%).
Liang Y (2026). [PMID: 41833451](https://pubmed.ncbi.nlm.nih.gov/41833451/). *J Matern Fetal Neonatal Med*. [Case Report / Case Series]
Privitera F (2025). [PMID: 40067214](https://pubmed.ncbi.nlm.nih.gov/40067214/). *Epilepsia*. [Other]
Gao CW (2024). [PMID: 38857303](https://pubmed.ncbi.nlm.nih.gov/38857303/). *PLoS Genet*. [Basic Science / Preclinical]
Safdar OY (2024). [PMID: 39790802](https://pubmed.ncbi.nlm.nih.gov/39790802/). *J Family Med Prim Care*. [Case Report / Case Series]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 6:19 AM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
Common questions about Kabuki syndrome 2
Head and neck |
4 |
Cleft palate, Microcephaly, High palate |
Growth and development | 3 | Short stature, Postnatal growth retardation, Intrauterine growth retardation |
Eyes | 2 | Strabismus, Nystagmus |
Arms and legs | 2 | Prominent fingertip pads, Short 5th finger |
Ears | 2 | Hearing loss (hearing impairment), Recurrent otitis media |
Muscles | 2 | Low muscle tone (hypotonia), Generalized hypotonia |
Kidneys and urinary system | 1 | Horseshoe kidney |
Bones and joints | 1 | Joint hypermobility |
Digestive system | 1 | Feeding difficulties in infancy |
Pregnancy and birth | 1 | Neonatal hypoglycemia |
Heart and blood vessels | 1 | Atrial septal defect |
Age of onset: infancy, at birth, newborn period, before birth.
This section summarizes findings in more than 400 individuals with a molecularly confirmed diagnosis of Kabuki syndrome (KS).
Individuals with KS typically exhibit normal growth parameters at birth.
Source: GeneReviews — "Kabuki Syndrome"
KMT2D
Individuals with KS caused by a heterozygous pathogenic missense variants in the terminal regions of KMT2D may have an increased risk for autoimmune disease .
Individuals with KS caused by a whole-gene deletion of KMT2D or pathogenic truncating variants that occur in the first half of the gene may have more severe intellectual disability .
Note: Individuals with a heterozygous pathogenic variant involving exons 38 or 39 potentially resulting in a gain of function may have some features similar to KS but otherwise have a phenotype that is noticeably different from KS .
KDM6A
Source: GeneReviews — "Kabuki Syndrome"
Penetrance for pathogenic variants in KMT2D appears to be complete; not enough information is available to make any conclusions regarding penetrance for those with pathogenic variants in KDM6A. Variable expressivity may lead to underascertainment of mildly affected individuals.
Source: GeneReviews — "Kabuki Syndrome"
Highly arched and broad eyebrows with the lateral third displaying sparseness or notching
Short columella with depressed nasal tip
Large, prominent, and/or cupped ears
2 Skeletal anomalies:
Spine abnormalities including sagittal clefts, hemivertebrae, butterfly vertebrae, narrow intervertebral disc space, and/or scoliosis
Brachydactyly V
Brachymesophalangy
Clinodactyly of fifth digits
Source: GeneReviews — "Kabuki Syndrome"
Table 2.
Disorders to Consider in the Differential Diagnosis of Kabuki Syndrome (KS)
Disorder | Gene(s) | MOI | Clinical Features
Overlapping w/KS | Distinguishing from KS
| CHD7 | AD | • Cleft palate
Congenital heart defects
Ocular coloboma
Growth restriction
| In CHARGE syndrome:
Square face
Short, wide ear w/little or no earlobe
Prominent columella
Broad nasal root
In KS: fingertip pads
22q11.2 deletion syndrome | See footnote 1. | AD | • Cleft palate
Congenital heart defects
Urinary tract anomalies
| In 22q11 deletion syndrome:
Short narrow palpebral fissures w/hooded eyelids
Bulbous nasal tip
Small, C-shaped ears w/overfolded superior /or lateral helices
IRF6-related disorders2 | IRF6 | AD | • Cleft lip palate
Lip pits
Source: GeneReviews — "Kabuki Syndrome"
Genetic testing for KDM6A is available. Testing is considered confirmatory for diagnosis.
System/Concern | Evaluation | Comment |
|---|---|---|
Growth | Measurement of height, weight, head circumference | Consider plotting growth on KMT2D-related KS-specific growth charts.1; Growth restriction poor weight gain are common sequela of feeding difficulties. |
Ophthalmologic | Ophthalmology eval | For assessment of strabismus, refractive error, ptosis, corneal abnormalities |
Hearing | Baseline audiology eval | To assess for conductive /or sensorineural hearing loss |
Mouth | Directed evaluation of the palate for palatal anomalies | Consider referral to a craniofacial specialist if palatal anomalies are suspected. Consider dental eval for those age 3 yrs. |
Cardiac | Echocardiogram w/visualization of the aortic arch | To assess for congenital heart defects incl coarctation of the aorta Consider EKG. |
Respiratory | Consider chest radiographs to assess for diaphragmatic eventuation. | In those w/respiratory issues, chronic cough, or recurrent pneumonia Gastrointestinal/ |
Feeding | Assess nutritional status, feeding, GERD. | Consider assessment by feeding team /or VFSS for those w/suspected dysphagia.; Infants may have FTT; adolescents adults may have obesity. |
Genitourinary | Baseline kidney ultrasound | To evaluate for kidney anomalies hydronephrosis Physical exam for hypospadias /or cryptorchidism in males |
Musculoskeletal | Consider radiographs of the spine in those w/scoliosis. | To assess for vertebral anomalies |
Endocrinologic | Consider obtaining baseline glucose level in persons of any age. | To assess for hypoglycemia; if identified, further eval for hyperinsulinism may be considered.2 In neonates infants w/persistent hypoglycemia, assess for hyperinsulinism.3 |
Immunologic | T cell count, T cell subsets, serum immunoglobulin levels at time of diagnosis or at age 1 yr (whichever is later) | Refer to immunologist if:; Levels are abnormal; or; Person has history of recurrent infections. |
Neurologic | EEG | In those w/suspected seizures Head MRI |
Neurobehavioral/Psychiatric | Neuropsychiatric eval | Screen persons age 12 mos for concerns incl sleep disturbances, ADHD, anxiety, /or findings suggestive of ASD. Miscellaneous/ |
Other | Developmental assessment | Evaluate motor, speech-language, general cognitive, vocational skills. |
Source: GeneReviews — "Kabuki Syndrome"
In those with joint laxity, activities that increase the risk of joint damage (e.g., bouncing on a trampoline) should be avoided.
Source: GeneReviews — "Kabuki Syndrome"
Based on the function of KMT2D and KDM6A as regulators of chromatin expression , it has been hypothesized that histone deacetylase inhibitors (HDACi) could have a beneficial effect on individuals with Kabuki syndrome. created a mouse model of KS and found that treatment with HDACi normalized the structural and functional differences seen in certain brain areas in these affected mice, leading to improved neurogenesis and memory. This has yet to be tested in humans with KS, but clinical trials based on these mouse studies are in the planning phase. Since ketosis acts as an endogenous HDACi, others have hypothesized that placing individuals with KS on a ketogenic diet could improve their cognitive issues .
Source: GeneReviews — "Kabuki Syndrome"
View trials for Kabuki syndrome 2
Evaluation
Frequency |
|---|
Growth | Measurement of at least height weight1 | At each appointment |
Ophthalmologic | Ophthalmology or optometry to assess vision | At least annually Hearing |
Musculoskeletal | Clinical eval for scoliosis | At each appointment until skeletal maturity |
Endocrinologic | Thyroid function tests | Every 2-3 yrs Immunologic |
Other | Monitor developmental progress educational needs. | At each visit during childhood adolescence 1. Adolescents and adults may develop obesity. |
Source: GeneReviews — "Kabuki Syndrome"
Phenotype severity distribution: 7 always present features, 3 very common features, 22 common features.
AI-curated news mentioning Kabuki syndrome 2
Updated May 13, 2026
A new episignature for Kabuki syndrome enhances the understanding of KMT2D variants, paving the way for improved precision medicine approaches. This discovery could significantly impact patient management and treatment strategies.
A multicenter study reports on eight patients with Kabuki syndrome, identifying three novel variants in the KMT2D gene. This research enhances understanding of the genetic underpinnings of this rare condition.
A novel KDM6A c.2429dup mutation linked to Kabuki syndrome type 2 has been identified in a fetus with increased nuchal translucency. This discovery enhances understanding of the genetic basis of this rare condition.