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Lysinuric protein intolerance (LPI) is a very rare inherited multisystem condition caused by disturbance in amino acid metabolism.
Features include always present findings: Hyperlysinuria, Hypolysinemia, and Global developmental delay; and very common findings: Enlarged liver (hepatomegaly), Weak and brittle bones (osteoporosis), and Protein avoidance. 40 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Digestive system | 6 | Enlarged liver (hepatomegaly), Nausea, Enlarged spleen (splenomegaly) |
Bones and joints | 4 | Weak and brittle bones (osteoporosis), Recurrent fractures, Skeletal muscle atrophy |
Blood and immune system | 4 | Low red blood cell count (anemia), Enlarged spleen (splenomegaly), Low white blood cell count (decreased total leukocyte count) |
Muscles | 3 | Low muscle tone (hypotonia), Muscle weakness, Skeletal muscle atrophy |
Growth and development | 2 | Short stature, Failure to thrive |
Brain and nerves | 2 | Intellectual disability, Global developmental delay |
Lab test results | 2 | Increased circulating lactate concentration, Elevated ferritin (iron storage marker) (increased circulating ferritin concentration) |
Lungs and breathing | 2 | Difficulty breathing (respiratory insufficiency), Pulmonary hemorrhage |
Kidneys and urinary system | 1 | Stage 5 chronic kidney disease |
Skin | 1 | Hyperextensible skin |
Usually infants with lysinuric protein intolerance (LPI) present with gastrointestinal symptoms (feeding difficulties, vomiting, and diarrhea) soon after weaning from breast milk or formula. Most affected infants show failure to thrive early in life. Neurologic presentation with episodes of coma is less common. Moderate hepatosplenomegaly is present. Muscular hypotonia and hypotrophy are observed from early infancy. Poor growth and delayed skeletal maturation are common after the first year of life. Osteoporosis may result in pathologic fractures. Intellectual development is usually normal unless episodes of prolonged coma cause neurologic damage.
Source: GeneReviews — "Lysinuric Protein Intolerance"
SLC7A7 function has not been fully characterized.
Lysinuric protein intolerance is caused by mutations in the SLC7A7 gene on chromosome 14.
Genotype-phenotype correlations have not been found. Variable expressivity is observed in individuals of Finnish origin who are homozygous for the same founder variant. In a large Italian pedigree, homozygosity for gave rise to different clinical presentations: severe short stature with pancreatic and renal involvement in a girl; early pulmonary alveolar proteinosis causing death in a boy; a very mild clinical presentation in another boy whose brother had a similar clinical picture but died suddenly after a flu-like episode . The pathogenic variant was found in 13 individuals belonging to nine independent families from Italy, Morocco, and North Africa. Five of the 13 had a severe phenotype with pulmonary alveolar proteinosis .
Source: GeneReviews — "Lysinuric Protein Intolerance"
Lysinuric protein intolerance (LPI) should be suspected in an infant who presents after weaning from breast milk or formula with the following features.
Early clinical features
Recurrent vomiting with episodes of diarrhea
Episodes of stupor and coma after a protein-rich meal
Poor feeding
Aversion to protein-rich food
Failure to thrive
Enlargement of the liver and spleen
Muscular hypotonia
Later clinical features. In some individuals, the diagnosis is established in adulthood. Over time, additional clinical features appear:
Poor growth
Early (often severe) osteoporosis
Subclinical or overt pulmonary involvement
Renal involvement
Hemophagocytic lymphohistiocytosis/macrophagic activation syndrome
Biochemical laboratory features
Source: GeneReviews — "Lysinuric Protein Intolerance"
The phenotypic variability of lysinuric protein intolerance (LPI) has resulted in various misdiagnoses. Hyperammonemia. Hyperammonemia and clinical manifestations related to it are shared by other metabolic diseases, notably the urea cycle disorders (see Urea Cycle Disorders Overview). Increased orotic aciduria and hyperexcretion of cationic amino acids help to distinguish LPI from other hyperammonemic conditions. Lysosomal storage diseases (LSDs). Hepatosplenomegaly, interstitial lung disease, and hematologic manifestation may suggest LSDs. Malabsorptive diseases. The occurrence of gastrointestinal symptoms (e.g., vomiting, diarrhea) as well as of hypoproteinemia and failure to thrive suggests celiac disease. LPI should be included in the differential diagnosis of malabsorptive diseases.
Source: GeneReviews — "Lysinuric Protein Intolerance"
Genetic testing for SLC7A7 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for lysinuric protein intolerance. The disease remains an area of unmet medical need.
To establish the extent of disease in an individual diagnosed with lysinuric protein intolerance, the following evaluations are recommended if they have not already been completed:
History for evidence of hyperammonemic crises with overt neurologic manifestations (vomiting, drowsiness, coma) and of respiratory involvement (cough, dyspnea, recurrent lower respiratory tract infections)
Neurologic evaluation to detect secondary neurologic damage
Respiratory evaluation including chest radiograph, pulmonary high-resolution computed tomography, and pulmonary function tests
Evaluation and follow up of growth parameters
Liver and spleen ultrasound examination to monitor liver structural changes and spleen enlargement
Hematologic evaluation (bone marrow aspirate may be required)
Immunologic assessment including plasma concentrations of immune globulins and, when clinically indicated, detection of autoimmune antibodies and immune complexes
Renal function studies
Bone density evaluation
Consultation with a biochemical geneticist and/or genetic counselor
The management of individuals with LPI is similar to that described in urea cycle disorders. In LPI, the severity of hyperammonemic crises rarely requires extreme treatments such as dialysis and hemofiltration. It is recommended that individuals with LPI be cared for by a specialized metabolic team.
Pharmacologic management. Blocking of...
Source: GeneReviews — "Lysinuric Protein Intolerance"
Large boluses of protein or amino acids should be avoided. It is not clear whether prolonged fasting may trigger hyperammonemic crises.
Source: GeneReviews — "Lysinuric Protein Intolerance"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Lysinuric Protein Intolerance"
View trials for lysinuric protein intolerance
Individuals with LPI should be referred for follow up to physicians with expertise in the treatment of inborn errors of metabolism. The age of the patient and the severity of the clinical features determine the frequency of clinical visits and monitoring. Monitoring should include the following:
Plasma concentrations of amino acids to identify deficiencies of essential amino acids induced by the protein-restricted diet (similar to that used in urea cycle disorders)
Attention to early signs of hyperammonemia including lethargy, nausea, vomiting, and poor feeding in young children, and headache and mood changes in older children
Fasting and postprandial blood ammonia concentrations
Urinary orotic acid excretion
Evaluation of renal function
Attention to early clinical signs of lung involvement
Serum concentrations of LDH and ferritin
The development of a multiorgan pathology in LPI requires careful surveillance of several complications including lung and renal diseases and osteoporosis. No specific guidelines have been proposed. Therefore, a tailored approach is necessary for the follow up of a specific complication.
Source: GeneReviews — "Lysinuric Protein Intolerance"
Phenotype severity distribution: 3 always present features, 3 very common features, 3 common features.
Estimated prevalence: Unknown (Unknown prevalence).
No clinical trials have been registered for lysinuric protein intolerance.
24 publications have been identified in PubMed for lysinuric protein intolerance. Research spans Case Report / Case Series (67%), Basic Science / Preclinical (17%), and Epidemiology / Natural History (13%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 16 | 67% |
Laboratory research | 4 | 17% |
Disease patterns and progression | 3 | 13% |
Clinical study results | 1 | 4% |
Zubarovskaya N (2026). [PMID: 41337869](https://pubmed.ncbi.nlm.nih.gov/41337869/). *Molecular genetics and metabolism*. [Case Report / Case Series]
Li Y (2026). [PMID: 41821046](https://pubmed.ncbi.nlm.nih.gov/41821046/). *Orphanet journal of rare diseases*. [Epidemiology / Natural History]
Ak V (2026). [PMID: 42052869](https://pubmed.ncbi.nlm.nih.gov/42052869/). *Psychiatr Genet*. [Case Report / Case Series]
Ajayi JA (2025). [PMID: 41142409](https://pubmed.ncbi.nlm.nih.gov/41142409/). *Current research in physiology*. [Case Report / Case Series]
Rigoldi M (2025). [PMID: 39293417](https://pubmed.ncbi.nlm.nih.gov/39293417/). *Nephron*. [Basic Science / Preclinical]
Singh G (2025). [PMID: 41224357](https://pubmed.ncbi.nlm.nih.gov/41224357/). *BMJ case reports*. [Case Report / Case Series]
Rautanen T (2025). [PMID: 39802587](https://pubmed.ncbi.nlm.nih.gov/39802587/). *Clinical kidney journal*. [Clinical Trial Publication]
Gupta D (2025). [PMID: 40906283](https://pubmed.ncbi.nlm.nih.gov/40906283/). *Indian journal of pediatrics*. [Case Report / Case Series]
Giroud-Gerbetant J (2025). [PMID: 39881295](https://pubmed.ncbi.nlm.nih.gov/39881295/). *Molecular medicine (Cambridge, Mass.)*. [Basic Science / Preclinical]
Mezrigui R (2025). [PMID: 40096718](https://pubmed.ncbi.nlm.nih.gov/40096718/). *La Tunisie medicale*. [Case Report / Case Series]
Data assembled from 8 of 12 sources · Last updated Sep 19, 2026, 8:51 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
AI-curated news mentioning lysinuric protein intolerance
Updated Aug 27, 2026
Recent research highlights metabolic alterations linked to immune dysfunction in lysinuric protein intolerance. This study provides insights that could inform future therapeutic strategies for managing the disease.