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An autosomal recessive condition caused by mutation(s) in the MTRR gene, encoding methionine synthase reductase. It is characterized by homocystinuria and megaloblastic anemia.
Features include always present findings: Hyperhomocystinemia, Failure to thrive, Megaloblastic anemia, and Global developmental delay and others; and common findings: Hyperkinetic movements, Hypertonia, Cerebral cortical atrophy, and Seizure and others. 22 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 6 | Cerebral cortical atrophy, Seizure, Intellectual disability |
Muscles | 3 | Cerebral cortical atrophy, Low muscle tone (hypotonia), Brain shrinkage (cerebral atrophy) |
Eyes | 2 | Nystagmus, Blindness |
Blood and immune system | 2 | Megaloblastic anemia, Normocytic anemia |
Growth and development | 1 | Failure to thrive |
Lab test results | 1 | Decreased methionine synthase activity |
Disorders of intracellular cobalamin metabolism have a variable phenotype and age of onset that are influenced by the severity and location within the pathway of the defect. Table 4. Clinical Manifestations of Disorders of Intracellular Cobalamin Metabolism
Manifestations | Combined AdoCbl and MeCbl Deficiency | MeCbl Deficiency |
|---|---|---|
cblC1 | cblD2 | cblF3 |
Perinatal | Intrauterine growth restriction | X7 |
X |
MTRR encodes 5-methyltetrahydrofolate-homocysteine methyltransferase reductase (698 aa). Key enzyme in methionine and folate homeostasis responsible for the reactivation of methionine synthase (MTR/MS) activity by catalyzing the reductive methylation of MTR-bound cob(II)alamin. Highest expression in Lung (23.0 TPM) and Cells Cultured fibroblasts (22.4 TPM).
Methylcobalamin deficiency type cblE is caused by mutations in the MTRR gene on chromosome 5.
The MTRR protein participates in Defective MTRR causes HMAE, MTRR reduces cob(II)alamin to meCbl, and Defective MTRR does not convert cob(II)alamin to MeCbl pathways.
MTRR is classified as a druggable target (Clinically Actionable, Druggable Genome, and Enzyme categories) with score 3.0.
Genotype-phenotype correlations observed include the following:
cblC
Infantile-presentation (early-onset), severe disease is associated with the MMACHC pathogenic variants or in the homozygous or compound heterozygous state.
Noninfantile presentation (late onset) is usually associated with MMACHC pathogenic variants and MMACHC
[, , , , ]. It may also be associated with MMACHC variant if individuals are compound heterozygotes for , , , or .
cblD. The location of pathogenic variants within MMADHC correlates with the type of enzyme deficiency:
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
The disorders of intracellular cobalamin metabolism result from deficient synthesis of the coenzymes derived from vitamin B12:
Adenosylcobalamin (AdoCbl) – the coenzyme for methylmalonyl-CoA mutase enzyme
Methylcobalamin (MeCbl) – the coenzyme for the enzyme methionine synthase (MTR)
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
The following disorders may cause clinical manifestations and laboratory abnormalities similar to those seen in disorders of intracellular cobalamin metabolism.
Disorders causing both methylmalonic acidemia and homocystinuria
Vitamin B12 deficiency. Individuals with vitamin B12 deficiency can have methylmalonic acidemia and homocystinuria, as can the newborns of mothers who have vitamin B12 deficiency. To establish the diagnosis of vitamin B12 deficiency, it is necessary to measure serum vitamin B12 concentrations in both affected newborns and their mothers.
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
Genetic testing for MTRR is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for methylcobalamin deficiency type cblE. The disease remains an area of unmet medical need.
To establish the extent of disease and needs of an individual diagnosed with a disorder of intracellular cobalamin metabolism, the following evaluations are recommended. In an unstable individual:
Serial metabolic evaluations of blood gases, electrolytes, glucose, ammonia, liver function, total and direct bilirubin, renal function, lactate dehydrogenase, plasma amino acids (methionine), plasma methylmalonic acid (MMA), and total plasma homocysteine (tHcy) to guide acute management until the individual stabilizes
Complete blood count (CBC) with differential to evaluate for megaloblastic anemia or cytopenias
Peripheral blood smear to evaluate for the presence of schistocytes, in the presence of other manifestations of hemolytic uremic syndrome (HUS)
Once the individual becomes stable:
Clinical assessment of growth parameters, head circumference, ability to feed, developmental status, and neurologic status
Laboratory assessment of nutritional status (electrolytes, albumin, prealbumin, plasma amino acids [with careful attention to methionine levels], vitamin levels [including thiamine and 25-hydroxyvitamin D], and trace minerals) and renal function; complete blood count to monitor for cytopenias
Echocardiogram to screen for cardiac defects and cardiomyopathy
EEG and brain MRI in symptomatic individuals
Ophthalmologic examination
Consultation with a clinical geneticist and/or genetic counselor
A set of guidelines for th...
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
Potentially exacerbating circumstances:
Prolonged fasting (longer than overnight without dextrose-containing intravenous fluids)
Dietary protein intake below the recommended dietary allowance (RDA) for age
Dietary protein intake greater than that prescribed by a metabolic specialist especially in individuals with cblC, cblD-combined, cblF, or cblJ
Medical foods. Medical foods given to infants with isolated methylmalonic acidemia do not contain methionine and should be avoided as the decreased methionine intake may worsen hypomethioninemia and long-term use may contribute to poor head and linear growth , among other complications.
Nitrous oxide, an anesthetic that is potentially toxic as it depletes the body stores of vitamin B12 and inhibits methionine synthase activity [, , , ]
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
1 trial found
The following evaluations are performed at different intervals depending on age and disease severity:
During the first year of life, infants may need to be evaluated once or twice a month by a metabolic specialist.
Toddlers and school-age children should be evaluated at least twice a year to adjust medication dosing (hydroxocobalamin, betaine) during growth and to evaluate nutritional status.
Teens and adults may be seen on a yearly basis.
Clinical evaluation should assess the following:
Growth including weight, linear growth, and head circumference
Nutritional status
Feeding ability
Developmental and neurocognitive progress, as age-appropriate
Laboratory evaluation should include the following:
Metabolic studies including urine organic acids, serum methylmalonic acid analysis, plasma amino acids (methionine), plasma tHcy concentration
CBC to monitor for cytopenias
Nutritional studies, if indicated: electrolytes, albumin, prealbumin, plasma amino acids, vitamin levels (including thiamine and 25-hydroxyvitamin D), essential fatty acids, and trace minerals
Routine evaluations should include the following:
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"
Phenotype severity distribution: 5 always present features, 7 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
3 publications have been identified in PubMed for methylcobalamin deficiency type cblE. Research spans Case Report / Case Series (33%), Basic Science / Preclinical (33%), and Epidemiology / Natural History (33%).
Al-Tai MR (2025). [PMID: 40260059](https://pubmed.ncbi.nlm.nih.gov/40260059/). *Molecular genetics and metabolism reports*. [Epidemiology / Natural History]
Heinken A (2025). [PMID: 40790789](https://pubmed.ncbi.nlm.nih.gov/40790789/). *Journal of inherited metabolic disease*. [Basic Science / Preclinical]
Nguyen A (2024). [PMID: 38736634](https://pubmed.ncbi.nlm.nih.gov/38736634/). *JIMD reports*. [Case Report / Case Series]
Data assembled from 9 of 12 sources · Last updated Sep 19, 2026, 6:53 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
X |
X | X Hydrops fetalis | X |
Dysmorphic features | +/-8 | +/- |
X | Congenital heart disease | X9 |
X | X | — |
Fetal dilated cardiomyopathy | X | — |
Hydrocephalus | X | — |
X | Brain malformations | +/- |
X | Cardiomyopathy w/left ventricular noncompaction | X |
Infantile childhood | Acute metabolic decompensation | X |
X | Lethargy | X |
X | X | — |
X | X Progressive encephalopathy | X |
X | Seizures | X |
X | X | X |
Ataxia | X | X |
Hypotonia | X | X |
X | X | X |
Developmental delay / intellectual disability | X | X |
X | X | X |
Demyelinating neuropathy | X | Dystonia |
X | Microcephaly | X |
X | X Subdural hematoma | X10 |
Feeding difficulties | X | X |
X | X Failure to thrive | X |
Nystagmus | X11 | X |
X | X | — |
Retinal degeneration | X11 | — |
X | Maculopathy | X |
Optic atrophy | X11 | — |
X Megaloblastic anemia, cytopenias | X | X |
X | Stomatitis, glossitis | X |
X | Hemolytic uremic syndrome | X12 |
X | X13 Cerebral atrophy | X |
X | Dysmorphic features | X |
X | Infantile spasms | X |
X Hyperammonemia | X | X |
Adolescent adulthood | Progressive encephalopathy | X |
Leukoencephalopathy | X14 | — |
Psychosis | X15 | X |
Dementia | X15 | — |
Neuropsychiatric symptoms | X15 | — |
X | Executive dysfunction | X14 |
X | Subacute combined degeneration of the spinal cord | X15 |
X16 Glomerulopathy | X17 | — |
X | Thromboembolic microangiopathy | X18 |
Deep venous thrombosis | X15 | — |
X | Pulmonary thromboembolism | X19 |
Stroke | X20 | — |
Marfanoid features | X21 | 1. 2. , , 3. , 4. , 5. 6. 7. 8. 9. 10. 11. 12. , 13. 14. 15. , 16. 17. 18. , 19. 20. 21. |
Source: GeneReviews — "Disorders of Intracellular Cobalamin Metabolism"