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Mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria is characterized by the association of a mitochondrial encephalomyopathy and an aminoacidopathy. It has been described in two brothers presenting with developmental delay, neurological signs, deafness, exercise intolerance, lactic acidosis and elevation of several plasmatic amino acids. Mitochondria morphology was found to be abnormal on muscle biopsy. Transmission is likely to be linked to maternal mitochondrial DNA.
Features include always present findings: Hyperkinetic movements, Dystonia, Low muscle tone (hypotonia), and Motor delay and others; and very common findings: Hearing loss (hearing impairment) and Increased circulating lactate concentration. 44 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 14 | Inability to walk, Dystonia, Seizure |
Muscles | 6 | Global brain atrophy, Low muscle tone (hypotonia), Skeletal muscle atrophy |
Lab test results | 3 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Decreased activity of mitochondrial respiratory chain, Increased circulating lactate concentration |
Ears | 2 | Hearing loss (hearing impairment), Inner ear hearing loss (sensorineural hearing impairment) |
Eyes | 2 | Strabismus, Ptosis |
Growth and development | 2 | Short stature, Failure to thrive |
Digestive system | 2 | Gastroesophageal reflux, Feeding difficulties in infancy |
Lungs and breathing | 2 | Decreased activity of mitochondrial respiratory chain, Difficulty breathing due to muscle weakness (respiratory insufficiency due to muscle weakness) |
Head and neck | 1 | Facial diplegia |
Skin | 1 | Excessive sweating (hyperhidrosis) |
Bones and joints | 1 | Skeletal muscle atrophy |
Blood and immune system | 1 | Small red blood cells (microcytic anemia) |
SUCLA2-related mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria (SUCLA2-related mtDNA depletion syndrome) is characterized by onset of the following features in infancy: developmental delay, hypotonia, dystonia, muscular atrophy, sensorineural hearing impairment, growth failure, and feeding difficulties. Other less frequent features include choreoathetosis, muscle weakness, recurrent vomiting, ptosis, and kyphoscoliosis. The median survival is age 20 years; approximately 30% of affected individuals succumb during childhood. To date, 61individuals have been identified with biallelic pathogenic variants in SUCLA2, including 50 cases reviewed by , , , , , , , . The following description of the phenotypic features associated with this condition is based on these reports. Table 2. SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria: Frequency of Select Features Feature | % of Persons w/Feature Development
Developmental delay/ intellectual disability | 95% |
|---|---|
Neuromuscular | Hypotonia |
Feeding/gastrointestinal |
SUCLA2 function has not been fully characterized.
Mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria is associated with mutations in the SUCLA2 gene on chromosome 13.
No consensus clinical diagnostic criteria for SUCLA2-related mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria (SUCLA2-related mtDNA depletion syndrome) have been published.
SUCLA2-related mtDNA depletion syndrome typically manifests during early infancy and should be suspected in a proband with a combination of the following clinical, brain MRI, and supportive laboratory findings and family history.
Clinical findings
Developmental delay (DD)/ intellectual disability (ID). Mild-to-profound developmental delay and intellectual disability
• Neuromuscular features
Hypotonia, axial or generalized
Dystonia
Muscle atrophy
• Sensorineural hearing impairment
• Feeding and growth issues
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
SUCLA2-related mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria (SUCLA2-related mtDNA depletion syndrome) needs to be differentiated from other mtDNA depletion syndromes, a genetically and clinically heterogeneous group of primarily autosomal recessive disorders that are characterized by a severe reduction in mtDNA content leading to impaired energy production in affected tissues and organs . Mitochondrial DNA depletion syndromes occur as a result of defects in mtDNA maintenance caused by pathogenic variants in nuclear genes that function in either mitochondrial nucleotide synthesis (TK2, SUCLA2, SUCLG1, RRM2B, DGUOK, and TYMP) or mtDNA replication (POLG, TWNK, TFAM, RNASEH1, MGME1) and are phenotypically classified into hepatocerebral, encephalomyopathic, encephaloneuropathic, neurogastrointestinal, and myopathic forms . See also the Mitochondrial DNA Maintenance Defects Overview. The phenotype of SUCLG1-related mtDNA depletion syndrome may be difficult to distinguish from SUCLA2-related mtDNA depletion syndrome. SUCLG1-related mtDNA depletion syndrome is characterized by developmental delay, intellectual disability, hypotonia, muscle atrophy, feeding difficulties, growth restriction, dystonia, hearing loss, lactic acidosis, elevated urine and plasma methylmalonic acid, and mtDNA depletion. However, hepatopathy and cardiomyopathy occur in SUCLG1-related mtDNA depletion only. Table 3. Mitochondrial DNA Depletion Syndromes
Phenotype1 | Gene |
|---|
Genetic testing for SUCLA2 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria has been reported in the published literature.
No approved treatments are currently available for mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria. The disease remains an area of unmet medical need.
No clinical practice guidelines for SUCLA2-related mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria (SUCLA2-related mtDNA depletion syndrome) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SUCLA2-related mtDNA depletion syndrome, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 4. SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment |
|---|---|---|
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Neuromuscular | Neurologic eval | To incl assessment for hypotonia, dystonia, hypertonia, muscle weakness, muscle atrophy, movement disorders, clinical signs of seizures; Brain MRI; Consider EMG to assess myopathy.; Consider EEG if seizures are a concern. Orthopedics/ physical medicine rehab/ PT OT eval |
Hearing | Audiologic eval | To assess for sensorineural hearing loss Feeding/ |
Gastrointestinal | Gastroenterology/ nutrition/ feeding team eval | To incl eval of swallowing function/ aspiration risk, nutritional status, GERD; Consider eval for gastrostomy tube placement in affected persons w/dysphagia /or aspiration risk. |
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
View trials for mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 6. SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Development | Monitor developmental progress educational needs. | At each visit |
Neuromuscular | Monitor those w/dystonia, hypertonia, muscle atrophy, muscle weakness, choreoathetosis, or seizures as clinically indicated. | Per treating neurologist Assess for new manifestations such as changes in muscle tone, emergence of movement disorders, or signs of seizures. |
Hearing | Monitor hearing status. | Per treating otolaryngologist audiologist Feeding/Gastrointestinal |
Vision/Ophthalmologic | Monitor vision, ocular alignment/movement, ptosis. | Per treating ophthalmologist(s) Low vision services |
Respiratory | Monitor for evidence of aspiration, respiratory insufficiency. | At each visit |
Skeletal | Monitor those w/scoliosis or joint contractures for progression. | Per treating orthopedist; Monitor for new development of kyphoscoliosis or joint contractures.; Physical medicine, OT/PT assessment of mobility, self-help skills |
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
Phenotype severity distribution: 12 always present features, 2 very common features, 6 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria.
248 publications have been identified in PubMed for mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria. Research spans Review / Meta-Analysis (41%), Basic Science / Preclinical (33%), and Epidemiology / Natural History (9%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 102 | 41% |
Laboratory research | 81 | 33% |
Disease patterns and progression | 22 | 9% |
Patient case studies | 19 | 8% |
Clinical study results | 10 | 4% |
Testing and diagnosis research | 8 | 3% |
Other research | 3 | 1% |
New treatment approaches | 3 | 1% |
Pranzatelli TJF (2026). [PMID: 41162286](https://pubmed.ncbi.nlm.nih.gov/41162286/). *Ann Rheum Dis*. [Basic Science / Preclinical]
Distelmaier F (2026). [PMID: 40929079](https://pubmed.ncbi.nlm.nih.gov/40929079/). *Brain*. [Case Report / Case Series]
Yan W (2026). [PMID: 41547848](https://pubmed.ncbi.nlm.nih.gov/41547848/). *Nat Commun*. [Basic Science / Preclinical]
Zink A (2026). [PMID: 41819105](https://pubmed.ncbi.nlm.nih.gov/41819105/). *Cell*. [Basic Science / Preclinical]
Damiano M (2026). [PMID: 41729327](https://pubmed.ncbi.nlm.nih.gov/41729327/). *J Neurol*. [Basic Science / Preclinical]
Morison LD (2026). [PMID: 40379967](https://pubmed.ncbi.nlm.nih.gov/40379967/). *Eur J Hum Genet*. [Epidemiology / Natural History]
Ferri C (2026). [PMID: 41798958](https://pubmed.ncbi.nlm.nih.gov/41798958/). *Front Immunol*. [Review / Meta-Analysis]
Lee S (2026). [PMID: 41206258](https://pubmed.ncbi.nlm.nih.gov/41206258/). *Am J Geriatr Psychiatry*. [Review / Meta-Analysis]
Anderson EN (2026). [PMID: 41468891](https://pubmed.ncbi.nlm.nih.gov/41468891/). *American journal of human genetics*. [Basic Science / Preclinical]
Lopriore P (2026). [PMID: 41538773](https://pubmed.ncbi.nlm.nih.gov/41538773/). *Neurology*. [Epidemiology / Natural History]
Data assembled from 7 of 12 sources · Last updated Sep 21, 2026, 2:34 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Feeding difficulties
Vision/ophthalmologic | Ptosis |
Respiratory | Respiratory distress |
Skeletal | Kyphoscoliosis |
Other | Hypoglycemia |
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
Disorder/Phenotype
Additional Common Manifestations2 |
|---|
DGUOK | DGUOK deficiency | DD, hypotonia, nystagmus, lactic acidosis POLG | Alpers-Huttenlocher syndrome |
TWNK | Encephalohepatopathy (OMIM 271245) | DD, hypotonia, lactic acidosis | — |
TFAM | Encephalohepatopathy (OMIM 617156) | IUGR, hypoglycemia Encephalomyopathic | FBXL4 |
OPA1 | Encephalomyopathy (OMIM 616896) | DD, HCM, optic atrophy | — |
ABAT | Encephalomyopathy w/ GABA (OMIM 613163) | DD, hypotonia, epilepsy, GABA in plasma, urine, CSF | — |
RNASEH1 | Encephalomyopathy (OMIM 616479) | Ophthalmoplegia, ptosis, ataxia Neurogastrointestinal encephalopathic | TYMP |
Source: GeneReviews — "SUCLA2-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria"
Measure weight, length/height, head circumference; review growth charts. |
To assess for growth deficiency/ failure to thrive |
Vision/Ophthalmologic | Ophthalmologic eval | To assess for reduced vision, ophthalmoplegia, ptosis, strabismus that may require referral for subspecialty care /or low vision services |
Respiratory | Pulmonary eval | To assess for sleep apnea |
Skeletal | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Joint contractures kyphoscoliosis; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) |
Genetic counseling | By genetics professionals1 | To inform affected persons their families re nature, MOI, implications of SUCLA2-related mtDNA depletion syndrome to facilitate medical personal decision making Family support resources |
Manifestation/Concern | Treatment | Considerations/Other Developmental delay/ |
Intellectual disability | See . | — |
Dystonia | Standardized treatment for dystonia by experienced neurologist | — |
Hypertonia/Spasticity | Orthopedics/ physical medicine rehab/ PT OT incl stretching to help avoid contractures falls | Consider need for positioning mobility devices, disability parking placard. |
Epilepsy | Standardized treatment w/ASM by experienced neurologist | Many ASMs may be effective; none has been demonstrated effective specifically for this disorder.; Education of parents/caregivers1 Sensorineural hearing impairment |