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Features include always present findings: Peripheral axonal neuropathy, Gait ataxia, CSF oligoclonal immunoglobulin G bands, and Low muscle tone (hypotonia) and others; and very common findings: Reduced visual acuity and Color vision defect. 40 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 14 | Peripheral axonal neuropathy, Mild intellectual disability, Dystonia |
AFG3L2 encodes AFG3 like matrix AAA peptidase subunit 2 (797 aa). Catalytic component of the m-AAA protease, a protease that plays a key role in proteostasis of inner mitochondrial membrane proteins, and which is essential for axonal and neuron development. Highest expression in Muscle Skeletal (82.4 TPM) and Cells EBV-transformed lymphocytes (75.1 TPM).
Optic atrophy 12 is caused by mutations in the AFG3L2 gene on chromosome 18.
The AFG3L2 protein participates in Substrate of AFG3L2 (mitochondrial matrix), Substrate of AFG3L2 (mitochondrial inner membrane), and Substrate of YME1L1 (mitochondrial inner membrane) pathways.
AFG3L2 is classified as a druggable target (Enzyme, Neutral Zinc Metallopeptidase, and Protease categories) with score 0.0.
No consensus clinical diagnostic criteria for AFG3L2-related neurologic disorders have been published.
The diagnosis of an AFG3L2-related neurologic disorder should be considered in probands with the following clinical and imaging findings and family history.
Clinical findings
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
No approved treatments are currently available for optic atrophy 12. The disease remains an area of unmet medical need.
No clinical practice guidelines for AFG3L2-related neurologic disorders have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with an AFG3L2-related neurologic disorder, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended.
Table 5.
AFG3L2-Related Neurologic Disorders: Recommended Surveillance
System/Concern | Evaluation | Frequency
| • Neurologic assessment for progression of ataxia, UMN or LMN signs, dystonia parkinsonism, autonomic dysfunction
Data assembled from 6 of 12 sources · Last updated Sep 18, 2026, 2:36 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
Eyes |
8 |
Nystagmus, Blindness, Congenital nystagmus |
Ears | 3 | Hearing loss (hearing impairment), Bilateral sensorineural hearing impairment, Inner ear hearing loss (sensorineural hearing impairment) |
Muscles | 3 | Low muscle tone (hypotonia), Brain shrinkage (cerebral atrophy), Damage to the optic nerve (optic atrophy) |
Pregnancy and birth | 1 | Congenital nystagmus |
To date, hundreds of individuals have been identified with an AFG3L2-related neurologic disorder [, , , , , , , ]. The following description of the phenotypic features associated with these conditions is based on these reports and highlights the four distinct clinical presentations associated with AFG3L2-related neurologic disorders.
Age of onset and progression. The usual age at onset is early adulthood (26.5 ± 17.2 years); the range is from birth to 74 years, although infantile presentation is rare. The disease course is slowly progressive with or without slight impairment of functional autonomy even decades after onset. Most individuals remain ambulatory throughout life. Presentation.
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Variant locations. Reported phenotype correlations with variant locations to date include the following :
Most reported SCA28-related pathogenic variants affect the proteolytic domain (exons 15 and 16).
The five SPAX5-related pathogenic variants described to date are in the proteolytic domain (exons 15 and 16).
SCAR-related pathogenic variants, identified in two individuals to date, are compound heterozygous variants – p.[Tyr616Cys];[p.Val723Met] and p.[Arg632Ter];p.[Val723Met] – located in the proteolytic domain (exons 15 and 16).
OPA12-related pathogenic variants cluster in the ATPase domain (exons 9 to 12).
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
SCA28. Based on studies published to date, penetrance appears to be complete . OPA12. Reduced penetrance or subclinical phenotypes are suggested by published data .
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Spinocerebellar ataxia type 28 (SCA28). The ataxic gait of individuals with SCA28 is indistinguishable from that seen in other adult-onset inherited or acquired ataxias. When the family history suggests autosomal dominant inheritance, all other autosomal dominant cerebellar ataxias should be considered (see Hereditary Ataxia Overview). Spastic ataxia type 5 (SPAX5). The differential diagnosis of SPAX5 should include other spastic ataxias and complex ataxias. AFG3L2-related autosomal recessive spinocerebellar ataxia (AFG3L2-SCAR) presents with a clinical phenotype that closely resembles SCA28; therefore, the differential diagnosis is similar to that of SCA28. Optic atrophy type 12 (OPA12). Optic atrophy observed in individuals with OPA12 is clinically indistinguishable from that seen in other forms of optic atrophy. See for selected genes of interest in the differential diagnosis of AFG3L2-related neurologic disorders. Table 2. Genes of Interest in the Differential Diagnosis of AFG3L2-Related Neurologic Disorders
Phenotype | MOI | Gene(s) | Disorder | Features of This Disorder / Comment |
|---|---|---|---|---|
Spinocerebellar ataxia(See Hereditary Ataxia Overview.) | AD | ATN1 | DRPLA | Polyglutamine expansions; Typically present before age 40 years; More rapidly progressive than SCA28 AFG3L2-SCAR; Assoc w/brain stem involvement on MRI AD |
FGF14 | GAA-FGF14-related ataxia (SCA27B) | Adult-onset ataxia; Typically begins w/episodic ataxia assoc w/downbeat nystagmus AR | — | — |
APTX | Ataxia w/oculomotor apraxia type 1 (AOA1) (OMIM 208920) | AOA1 AOA2 are childhood-onset disorders characterized by marked peripheral involvement, incl severe polyneuropathy.; They are typically more rapidly progressive than SCA28 AFG3L2-SCAR. AR | SETX | Ataxia w/oculomotor apraxia type 2 (AOA2) AR |
Chronic cough can precede neurologic symptoms by several decades. Spastic ataxia (SPAX)(OMIM PS108600) | AR | — | — | — |
CHP1 | SPAX9 | Spastic ataxia that may present w/childhood onset AR | COQ4 | SPAX10 AR |
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Genetic testing for AFG3L2 is available. Testing is considered confirmatory for diagnosis.
Table 3.
AFG3L2-Related Neurologic Disorders: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Neurologic exam to assess cerebellar motor dysfunction (gait postural ataxia, dysmetria, dysdiadochokinesis, tremor, dysarthria, nystagmus, saccades, smooth pursuit) | Use standardized scale to establish baseline for ataxia (SARA).1
Evaluate for UMN /or LMN dysfunction (weakness, spasticity, Babinski signs, hyperreflexia, amyotrophy, fasciculations). | • Brain MRI /or spinal cord MRI may be indicated to rule out coincident pathologies.
Consider referral to neuromuscular clinic.
Evaluate for extrapyramidal features (e.g., dystonia, parkinsonism). | Consider referral to movement disorders clinic.
Consider referral to OT, PT, rehab specialist. | To assess gross motor fine motor skills, gait, ambulation, need for adaptive devices
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Alcohol consumption and sedatives such as benzodiazepines may worsen gait ataxia and coordination difficulties. Carbamazepine and phenytoin may exacerbate myoclonus in spastic ataxia type 5 (SPAX5).
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
View trials for optic atrophy 12
Monitor ataxia progression w/standardized scale (SARA).1
| Annually or more often for an acute exacerbation
Physiatry OT/PT assessment of mobility self-help skills as they relate to ataxia, spasticity, weakness | Annually or more often for an acute exacerbation
EEG seizure history (in SPAX5) | Every 6 mos or annually; more often for an acute exacerbation
| Assess need for alternative communication method or speech therapy. | Per disease progression
| Assess aspiration risk feeding methods.
| • Monitor BMI.
Consult nutritionist.
High-calorie supplementation
| Annually
Ophthalmologic
involvement | • Assessment of nystagmus, ophthalmoparesis, ptosis.
Assessment of visual acuity photophobia.
Cognitive/
neurobehavioral/
psychiatric manifestations | Evaluate mood, signs of psychosis, cognitive complaints, cognitive deterioration (e.g., using CCAS scale) to identify need for pharmacologic psychotherapeutic interventions. | Per disease progression development of psychiatric manifestations
| Assess family need for social work support (e.g., pall...
Source: GeneReviews — "AFG3L2-Related Neurologic Disorders"
Phenotype severity distribution: 21 always present features, 2 very common features, 3 common features.