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Any rhizomelic chondrodysplasia punctata in which the cause of the disease is a mutation in the GNPAT gene.
Features include always present findings: Rhizomelia, Disproportionate short stature, Inguinal hernia, and Short stature and others. 37 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Muscles | 5 | Flexion contracture, Hip contracture, Low muscle tone (hypotonia) |
Bones and joints | 5 | Mild bone density loss (osteopenia), Irregular vertebral endplates, Sideways curvature of the spine (scoliosis) |
Head and neck | 4 | High palate, Submucous cleft hard palate, Microcephaly |
Growth and development | 3 | Disproportionate short stature, Short stature, Failure to thrive |
Eyes | 3 | Zonular cataract, Cataract, Optic nerve hypoplasia |
Brain and nerves | 3 | Severe intellectual disability, Intellectual disability, Depressed nasal bridge |
GNPAT encodes glyceronephosphate O-acyltransferase (680 aa). Dihydroxyacetonephosphate acyltransferase catalyzing the first step in the biosynthesis of plasmalogens, a subset of phospholipids that differ from other glycerolipids by having an alkyl chain attache... Highest expression in Muscle Skeletal (65.5 TPM) and Cells EBV-transformed lymphocytes (55.7 TPM).
Rhizomelic chondrodysplasia punctata type 2 is associated with mutations in the GNPAT gene on chromosome 1.
The GNPAT protein participates in DHAP is converted to 1-acyl GO3P by GNPAT, palmitoyl-CoA + DHAP = 1-palmitoylglycerone phosphate + CoASH, and 1-palmitoylglycerone phosphate + hexadecanol = O-hexadecylglycerone phosphate + palmitate pathways.
GNPAT is classified as a druggable target (Enzyme category) with score 0.0.
Genetic testing for GNPAT is available. Testing is considered confirmatory for diagnosis.
Phenotype severity distribution: 19 always present features.
1 clinical trial registered, 1 recruiting. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
2 publications have been identified in PubMed for rhizomelic chondrodysplasia punctata type 2. Research spans Basic Science / Preclinical (100%).
Boulling A (2025). [PMID: 40394457](https://pubmed.ncbi.nlm.nih.gov/40394457/). *Genetics, selection, evolution : GSE*. [Basic Science / Preclinical]
Sarkar C (2024). [PMID: 39404418](https://pubmed.ncbi.nlm.nih.gov/39404418/). *Cells*. [Basic Science / Preclinical]
Data assembled from 7 of 12 sources · Last updated Sep 20, 2026, 3:36 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center