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Features include always present findings: Short stature, Intrauterine growth retardation, and Micrognathia; and common findings: Small scrotum, Rhizomelia, Micropenis, and Microcephaly and others. 44 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 5 | Seizure, Gait ataxia, Ataxia |
ARCN1 encodes archain 1 coat protein complex I subunit delta (511 aa). Component of the coatomer, a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Highest expression in Cells Cultured fibroblasts (201.3 TPM) and Artery Aorta (132.2 TPM).
Short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay is associated with mutations in the ARCN1 gene on chromosome 11.
ARCN1 is classified as a druggable target with score 2.5.
Genetic testing for ARCN1 is available. Testing is considered confirmatory for diagnosis.
Phenotype severity distribution: 3 always present features, 8 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay.
2 publications have been identified in PubMed for short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay. Research spans Review / Meta-Analysis (50%) and Case Report / Case Series (50%).
Amin S (2025). [PMID: 40552310](https://pubmed.ncbi.nlm.nih.gov/40552310/). *Front Cell Dev Biol*. [Review / Meta-Analysis]
Chang G (2024). [PMID: 39731039](https://pubmed.ncbi.nlm.nih.gov/39731039/). *BMC Pediatr*. [Case Report / Case Series]
Data assembled from 6 of 12 sources · Last updated Sep 18, 2026, 9:43 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Bones and joints
4 |
Broad femoral neck, Joint hypermobility, Skeletal muscle hypertrophy |
Growth and development | 3 | Short stature, Failure to thrive, Intrauterine growth retardation |
Head and neck | 3 | High palate, Microcephaly, Cleft palate |
Arms and legs | 2 | Large hands, 2-3 toe syndactyly |
Eyes | 2 | Strabismus, Cataract |
Muscles | 2 | Shrinkage of the cerebellum (cerebellar atrophy), Skeletal muscle hypertrophy |
Digestive system | 2 | Gastroesophageal reflux, Feeding difficulties |
Heart and blood vessels | 1 | Ventricular septal defect |
Lungs and breathing | 1 | Obstructive sleep apnea |