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Features include always present findings: Male infertility and Reduced sperm motility.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Hormones | 1 | Male infertility |
Y chromosome infertility should be suspected in males with the following clinical and laboratory features.
Clinical features
A history of infertility
Normal physical examination in ~30%
Small testes in ~70% (males with Sertoli cell-only syndrome)
No approved treatments are currently available for spermatogenic failure, Y-linked, 1. The disease remains an area of unmet medical need.
To establish the extent of disease and needs in an individual diagnosed with Y chromosome infertility, the evaluations summarized in this section (if not performed as part of the evaluation that led to the diagnosis) are recommended:
Phenotype severity distribution: 2 always present features.
Data assembled from 4 of 12 sources · Last updated Sep 19, 2026, 4:30 PM UTC
Online Mendelian Inheritance in Man
Genetic and Rare Diseases Info Center
Males with Y chromosome infertility usually have no symptoms other than infertility. A physical examination may reveal small testes in those with Sertoli cell-only (SCO) syndrome. Physical examination is normal in approximately 30% of males with Y chromosome infertility. Males with Y chromosome infertility have azoospermia or severe, moderate, or mild oligozoospermia depending on the location and size of the Y chromosome deletion . Most males with AZFa or AZFb/c deletions have a very poor prognosis for finding any sperm with testicular sperm extraction (TESE). Males with AZFc deletions (b2/b4 or gr/gr) have an extremely favorable prognosis (87%) for finding sperm sufficient for successful intracytoplasmic sperm injection (ICSI).
Source: GeneReviews — "Y Chromosome Infertility"
Laboratory features
Semen analysis. Ejaculate is examined to determine the number, motility, and morphology of sperm. Semen analysis should follow the WHO guidelines, Laboratory Manual for the Examination and Processing of Human Semen . The following categories of sperm count are identified.
Table 1.
Classification of Sperm Count
Classification of Sperm Count1 | Sperm Count in Millions/mL2
Azoospermia | 0
Severe oligozoospermia | 1
Moderate oligozoospermia | 1-5
Mild oligozoospermia | 5-20
Normal | 20
Source: GeneReviews — "Y Chromosome Infertility"
Infertility affects 15%-20% of couples of reproductive age. Infertility, dependent to a great extent on the age of the female partner, has been estimated to be male related in about half of those couples, but this often-quoted figure is poorly documented. Most likely, oligospermia sufficiently severe to cause infertility would only be present in 10% of infertile couples. Causes of male infertility other than deletion of the Y chromosome are numerous and often controversial. In most cases, male infertility is of unknown etiology. Possible causes of male infertility other than Y chromosome deletion include the following conditions:
Source: GeneReviews — "Y Chromosome Infertility"
Consultation with a clinical geneticist and/or genetic counselor
A couple in which the male has Y chromosome infertility can be offered the option of in vitro fertilization using ICSI (intracytoplasmic sperm injection) . In this procedure, spermatozoa retrieved from ejaculate (in males with oligozoospermia) or extracted from testicular biopsies (in males with azoospermia) are injected by ICSI into a harvested egg by IVF (in vitro fertilization) . Retrieval of sperm has been successful for most males with deletions of AZFc, but rarely for males with deletions of AZFb or AZFa. The reason for this is that an autosomal copy of DAZ (DAZL) may serve as a "backup gene," which would help preserve a tiny amount of residual spermatogenesis in males with AZFc deletions that remove the DAZ genes. There are no such autosomal "backup" copies for genes in AZFa and AZFb. The definition of Sertoli cell-only (SCO) syndrome has been the subject of confusion in the literature. There are two main causes of non-obstructive azoospermia (NOA): maturation arrest and Sertoli cell-only.
Source: GeneReviews — "Y Chromosome Infertility"
Hormones or nutritional supplements could reduce severe oligospermia to complete azoospermia .
Source: GeneReviews — "Y Chromosome Infertility"
Ongoing studies are evaluating the use of skin biopsy in azoospermic men to make induced pluripotent stem cells (iPSC) differentiate into primordial germ cells and ultimately sperm [Author, personal communication]. Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Y Chromosome Infertility"
View trials for spermatogenic failure, Y-linked, 1