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Severe combined immunodeficiency (SCID) due to gamma chain deficiency, also called SCID-X1, is a form of SCID characterized by severe and recurrent infections, associated with diarrhea and failure to thrive.
Features include very common findings: Pneumonia, Decreased total lymphocyte count, Recurrent fever, and Decreased CD4+ T cell proportion and others; and common findings: Skin rash, Recurrent pneumonia, Decreased circulating IgA concentration, and Decreased circulating IgG concentration and others. 45 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 9 | Severe combined immunodeficiency, Recurrent fungal infections, Recurrent bacterial infections |
Digestive system | 4 | Enlarged liver (hepatomegaly), Chronic diarrhea, Diarrhea |
Lungs and breathing | 2 | Pneumonia, Recurrent pneumonia |
Skin | 2 | Skin rash, Recurrent bacterial skin infections |
Growth and development | 1 | Failure to thrive |
Brain and nerves | 1 | Recurrent bacterial meningitis |
Metabolism | 1 | Recurrent fever |
Lab test results | 1 | Increased circulating IgG concentration |
X-linked severe combined immunodeficiency (X-SCID) comprises a phenotypic spectrum ranging from typical X-SCID (early-onset disease that is fatal if not treated with HSCT) to atypical X-SCID (later-onset disease comprising phenotypes caused by variable immunodeficiency, immune dysregulation, and/or autoimmunity).
Affected males appear normal at birth. However, as the concentrations of transplacentally transferred maternal serum antibodies decline, infants with X-SCID are increasingly prone to infection. Prior to universal newborn screening for SCID, most infants with X-SCID came to medical attention between ages three and six months; presentation with life-threatening infection prior to age three months also occurred.
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
IL2RG encodes interleukin 2 receptor subunit gamma (369 aa). Common subunit for the receptors for a variety of interleukins. Probably in association with IL15RA, involved in the stimulation of neutrophil phagocytosis by IL15 Highest expression in Whole Blood (410.7 TPM) and Cells EBV-transformed lymphocytes (347.9 TPM).
T-B+ severe combined immunodeficiency due to gamma chain deficiency is caused by mutations in the IL2RG gene on chromosome X.
The IL2RG protein participates in IL2RG gene expression downstream of ALK signaling and AcK685-p-Y705,S727 STAT3 and SIN3A bind the IL2RG promoter pathways.
IL2RG is classified as a druggable target (Cell Surface, Druggable Genome, External Side Of Plasma Membrane, and Tyrosine Kinase categories) with score 2.6.
Typical X-SCID clinical phenotype is usually associated with functionally null IL2RG pathogenic variants resulting in the T–B+NK– immunophenotype. Atypical X-SCID clinical phenotype. Males with hypomorphic IL2RG variants that result in either production of a small amount of gene product or a protein with residual activity may have an atypical disease characterized as T+B+NK– or even nearly normal T and NK cells depending on the functionality of the variant [, , , , , , ]. One exception is the IL2RG variant . All reported individuals with this variant have had opportunistic infections within the first year of life, despite the presence of nearly normal numbers of T cells and NK cells .
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
The Primary Immune Deficiency Treatment Consortium (PIDTC) has established laboratory-based definitions for SCID . Infants with typical SCID have 300 autologous T cells per L, absent nave T cells, and poor proliferative responses to the mitogen phytohemagglutinin (10% of control values). Engraftment of maternal cells needs to be tested and excluded. Infants can also have hypomorphic SCID-related gene variants that allow residual function and produce an atypical phenotype (also known as "leaky" SCID) often with 1500 T cells per L.
There are two scenarios in which X-SCID may be considered: an abnormal SCID newborn screening and a symptomatic male with suggestive findings. Both scenarios warrant immediate subspecialty immunologic evaluation and steps taken to ensure the safe...
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
Since the implementation of newborn screening the incidence of each genetic type of typical severe combined immunodeficiency (SCID) has become clearer. X-SCID has remained one of the most common forms of typical SCID . summarizes genes known to be associated with typical SCID. Table 3. Typical Severe Combined Immunodeficiency: Genetic Causes
Gene(s) | Disorder | MOI | Lymphocyte Phenotype | Comments | NBS |
|---|---|---|---|---|---|
T | B | NK Types of typical SCID w/identical clinical presentations |
Genetic testing for IL2RG is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for T-B+ severe combined immunodeficiency due to gamma chain deficiency has been reported in the published literature.
No approved treatments are currently available for T-B+ severe combined immunodeficiency due to gamma chain deficiency. The disease remains an area of unmet medical need.
Management is discussed in three subsections: issues relating to , those relating to , and those for .
Clinical practices and protocols for typical X-linked severe combined immunodeficiency (X-SCID) can vary depending on the center; however, many aspects overlap in an effort to minimize infection and maximize pre-hematopoietic stem cell transplantation (HSCT) management in infants with abnormal newborn screening results. The following outlines management based on the Primary Immune Deficiency Treatment Consortium (PIDTC) analysis .
The following evaluations are indicated:
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
To ensure the safety of the infant/older individual pending definitive treatment to achieve immunocompetence, parents and other care providers need to avoid the following:
Breast-feeding and breast milk, until maternal CMV status is established by CMV serologies. CMV is a chronic infection and intermittent viral shedding in various bodily fluids occurs unpredictably. If maternal CMV serology is negative, breast milk may be considered safe for feeding.
Note: Use of pasteurized breast milk while the infant is being prepared for HSCT remains controversial given the severe negative effects of CMV infection in the outcome of HSCT.
Exposure to young children, sick contacts, or individuals with cold sores in order to decrease the risk of transmission of disease to the infant
Crowded enclosed spaces due to risk of infectious exposure
Live viral vaccines for the infant as well as household contacts until after immunocompetence is restored following HSCT
Transfusion of non-irradiated blood products . Use of leuko-reduced and CMV-negative, irradiated blood products only is recommended.
Areas of construction or soil manipulation as they increase the risk for fungal exposure
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
The following investigations are under way:
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
2 trials found
After successful HSCT, routine evaluation of affected males every six to 12 months is indicated to monitor lineage specific donor cell engraftment, growth, immune and lung function, and gastrointestinal and dermatologic issues. If conditioning chemotherapy was used, long-term monitoring of vital organ function and neurodevelopmental progress is also warranted.
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"
Phenotype severity distribution: 8 very common features, 11 common features.
Estimated prevalence: 1-9 in 100,000 (Uncommon).
2 clinical trials registered. Interventions under study include drug therapy and biologic therapy. Pipeline includes 2 PHASE1. Research is primarily sponsored by academic and government institutions.
13 publications have been identified in PubMed for T-B+ severe combined immunodeficiency due to gamma chain deficiency. Research spans Case Report / Case Series (46%), Gene Therapy / Novel Therapeutics (23%), and Basic Science / Preclinical (15%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 6 | 46% |
New treatment approaches | 3 | 23% |
Laboratory research | 2 | 15% |
Testing and diagnosis research | 1 | 8% |
Research summaries | 1 | 8% |
Knop O (2026). [PMID: 42181695](https://pubmed.ncbi.nlm.nih.gov/42181695/). *Mol Ther Nucleic Acids*. [Gene Therapy / Novel Therapeutics]
Gutiérrez-Zepeda BM (2026). [PMID: 42058195](https://pubmed.ncbi.nlm.nih.gov/42058195/). *Front Immunol*. [Case Report / Case Series]
Vasandan AB (2025). [PMID: 40749664](https://pubmed.ncbi.nlm.nih.gov/40749664/). *Immunity*. [Gene Therapy / Novel Therapeutics]
Dong L (2025). [PMID: 40751765](https://pubmed.ncbi.nlm.nih.gov/40751765/). *Journal of clinical immunology*. [Basic Science / Preclinical]
González-Torbay A (2025). [PMID: 40170851](https://pubmed.ncbi.nlm.nih.gov/40170851/). *Front Immunol*. [Case Report / Case Series]
Zhang L (2025). [PMID: 39789600](https://pubmed.ncbi.nlm.nih.gov/39789600/). *Orphanet J Rare Dis*. [Diagnostic / Biomarker]
Ding F (2025). [PMID: 40491749](https://pubmed.ncbi.nlm.nih.gov/40491749/). *Genes Dis*. [Case Report / Case Series]
Assing K (2025). [PMID: 41462576](https://pubmed.ncbi.nlm.nih.gov/41462576/). *Immun Inflamm Dis*. [Case Report / Case Series]
Jiang C (2024). [PMID: 39176082](https://pubmed.ncbi.nlm.nih.gov/39176082/). *Front Immunol*. [Review / Meta-Analysis]
Zhang L (2024). [PMID: 38532630](https://pubmed.ncbi.nlm.nih.gov/38532630/). *Mol Ther*. [Basic Science / Preclinical]
Data assembled from 9 of 12 sources · Last updated Sep 20, 2026, 1:10 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about T-B+ severe combined immunodeficiency due to gamma chain deficiency
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IL2RG | X-SCID (topic of this chapter; incl for comparison) | XL | – | + | – |
JAK3 | JAK3-SCID (OMIM 600802) | AR | – | + | – |
IL7R | IL7R-SCID (OMIM 608971) | AR | – | + | + |
Adenosine deaminase deficiency | AR | – | – | – | Delayed SCID if ADA deficiency is partial3 |
AK2 | Reticular dysgenesis (OMIM 267500) | AR | – | – | – |
CD3DCD3ECD247(CD3Z) | TCR deficiency (OMIM 615617, 615615, 610163) | AR | –/Low | + | + |
CORO1A | CORO1A deficiency (OMIM 615401) | AR | –/Low | +/– | +/– |
DCLRE1C | SCID Athabaskan (OMIM 602450) | AR | – | – | + |
PRKDC | DNAPKCS deficiency (OMIM 615966) | AR | – | – | + |
PTPRC(CD45) | CD45 deficiency (OMIM 608971) | AR | – | + | +/– |
RAG2 | RAG-deficient SCID (OMIM 601457) | AR | – | – | + |
Source: GeneReviews — "X-Linked Severe Combined Immunodeficiency"