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A rare genodermatosis with great phenotypic variation and characterized most commonly by ichthyosis, chondrodysplasia punctata (CDP), asymmetric shortening of the limbs, cataracts and short stature.
Features include very common findings: Patchy alopecia; and common findings: Rhizomelia, Cataract, Sideways curvature of the spine (scoliosis), and Epiphyseal stippling and others. 46 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Bones and joints | 5 | Stippled calcification in carpal bones, Kyphoscoliosis, Sideways curvature of the spine (scoliosis) |
Eyes | 3 | Cataract, Nystagmus, Glaucoma |
Skin | 3 | Patchy alopecia, Congenital ichthyosiform erythroderma, Congenital nonbullous ichthyosiform erythroderma |
Brain and nerves | 2 | Moderate intellectual disability, Enlarged brain ventricles (ventriculomegaly) |
Growth and development | 2 | Failure to thrive, Postnatal growth retardation |
Pregnancy and birth | 2 | Congenital ichthyosiform erythroderma, Congenital nonbullous ichthyosiform erythroderma |
Ears | 1 | Hearing loss (hearing impairment) |
Head and neck | 1 | Flat face |
Digestive system | 1 | Elevated 8(9)-cholestenol |
Variability in females. At least 95% of individuals with X-linked chondrodysplasia punctata 2 (CDPX2) are female. The clinical phenotypes in heterozygous females are highly variable and depend on the pattern of X-chromosome inactivation in relevant tissues (i.e., percentage of active X chromosomes with the pathogenic variant) and other possible modifying factors. Phenotypes range from fetal demise with multiple malformations and severe growth retardation to much milder manifestations, such as adults with only cutaneous features, short stature, or no recognizable physical abnormalities.
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
EBP encodes EBP cholestenol delta-isomerase (230 aa). Isomerase that catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers a catalytic step in the postlanosterol biosynthesis of cholesterol Highest expression in Liver (96.7 TPM) and Adrenal Gland (90.1 TPM).
X-linked chondrodysplasia punctata 2 is associated with mutations in the EBP gene on chromosome X.
The EBP protein participates in EBP isomerizes ZYMSTNL to LTHSOL, RUNX1, SPI1 (PU.1), GATA2, TAL1 (SCL), FLI1, and MYB bind the CEBPA promoter, and SPI1 (PU.1), CEBPA and DEK bind the promoter of the CSF3R (G-CSFR) gene pathways.
EBP is classified as a druggable target (Druggable Genome and Enzyme categories) with score 0.0.
Null EBP variants are associated with a severe CDPX2 phenotype in females and result in intrauterine lethality in males (except in a mosaic state). Hypomorphic hemizygous EBP variants are associated with a milder MEND phenotype in males .
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
A few clinically unaffected females with molecularly confirmed CDPX2 have been reported . However, these females were ascertained from segregation testing, and phenotyping may not have been as comprehensive as in the proband. Some women have been so mildly affected that they were identified only after having had a child with more severe features in whom CDPX2 was diagnosed. Although these adult women have subtle findings, their findings are sufficient to consider them affected.
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
X-linked chondrodysplasia punctata 2 (CDPX2) is a skeletal dysplasia that also affects the skin and eyes. Specific diagnostic criteria for CDPX2 have not been published. Classic CDPX2 occurs almost exclusively in females. There are reports of affected males with an XXY karyotype or with somatic mosaicism who have clinical manifestations similar to affected females.
CDPX2 should be suspected in an individual with the following clinical findings:
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
Several disorders demonstrate features similar to those of X-linked chondrodysplasia punctata 2 (CDPX2) and/or manifest stippling on radiographs and various combinations of limb asymmetry, short stature, intellectual disability, cataracts, and skin changes. The key radiologic finding of chondrodysplasia punctata occurs in various metabolic disorders, skeletal dysplasias, chromosome abnormalities, and teratogenic exposures.
Genetic Disorders
Table 3.
Disorders and Genes of Interest in the Differential Diagnosis of Chondrodysplasia Punctata 2, X-Linked
Differential Diagnosis Disorder | Gene(s) | MOI | Features of the Differential Diagnosis Disorder
Overlapping w/CDPX2 | Distinguishing from CDPX2
Skeletal dysplasia w/radiographic evidence of CDP1
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
Genetic testing for EBP is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for X-linked chondrodysplasia punctata 2. The disease remains an area of unmet medical need.
No published guidelines exist to establish the extent of disease or proper management in an individual with X-linked chondrodysplasia punctata 2 (CDPX2). The following recommendations are based on current literature and the authors' experience. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with CDPX2, the evaluations summarized (if they have not already been completed) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with Chondrodysplasia Punctata 2, X-Linked
System/Concern | Evaluation | Comment |
|---|---|---|
Musculoskeletal | Orthopedic evaluation; full skeletal survey | To assess limb length differences, kyphoscoliosis, other skeletal abnormalities |
Respiratory | Pulmonary evaluation | In individuals w/severe scoliosis that compromises respiratory function |
Integument | Dermatology evaluation | — |
Eyes | Ophthalmologic evaluation | To evaluate for congenital cataracts other ocular abnormalities |
Hearing | Hearing evaluation | To evaluate for hearing loss |
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
Adequate sun protection is recommended for individuals with ichthyosis, who are at risk of dehydration secondary to overheating during prolonged sun exposure. Furthermore, care must be taken with use of emollients (which are oil based) and direct sun exposure, which can lead to sunburn.
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
View trials for X-linked chondrodysplasia punctata 2
Table 6. Recommended Surveillance for Individuals with Chondrodysplasia Punctata 2, X-Linked
System/Concern | Evaluation | Frequency |
|---|---|---|
Musculoskeletal | Orthopedic evaluation | Frequency per orthopedist to monitor kyphoscoliosis or joint problems assess linear growth any leg length discrepancy; Scoliosis can progress rapidly. |
Integument | Dermatology evaluation | Frequency per dermatologist |
Eyes | Ophthalmology evaluation | Frequency per ophthalmologist |
Hearing | Audiology evaluation | As clinically indicated |
Renal | Renal ultrasound | Frequency per nephrologist to monitor hydronephrosis if present Miscellaneous/ |
Other | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination. | Each visit |
Source: GeneReviews — "Chondrodysplasia Punctata 2, X-Linked"
Phenotype severity distribution: 1 very common feature, 5 common features.
Estimated prevalence: 1-9 in 1,000,000 (Rare).
No clinical trials have been registered for X-linked chondrodysplasia punctata 2.
4 publications have been identified in PubMed for X-linked chondrodysplasia punctata 2. Research spans Case Report / Case Series (75%) and Review / Meta-Analysis (25%).
Villarreal EG (2026). [PMID: 41735768](https://pubmed.ncbi.nlm.nih.gov/41735768/). *Laryngoscope*. [Case Report / Case Series]
Qiao F (2025). [PMID: 40386185](https://pubmed.ncbi.nlm.nih.gov/40386185/). *Appl Clin Genet*. [Case Report / Case Series]
Shi X (2025). [PMID: 40193659](https://pubmed.ncbi.nlm.nih.gov/40193659/). *Medicine (Baltimore)*. [Case Report / Case Series]
Bosco M (2024). [PMID: 39181504](https://pubmed.ncbi.nlm.nih.gov/39181504/). *J Gynecol Obstet Hum Reprod*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 3:01 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about X-linked chondrodysplasia punctata 2
Renal
Renal ultrasound examination |
To identify monitor hydronephrosis |
Other | Consultation w/clinical geneticist /or genetic counselor | To incl genetic counseling Treatment of Manifestations Treatment is symptomatic and should be tailored to the individual. Table 5. |
Treatment of Manifestations in Individuals with Chondrodysplasia Punctata 2, X-Linked Manifestation/Concern | Treatment | Considerations/Other Skeletal |
manifestations | Treatment per orthopedist | Scoliosis can progress rapidly. Initial surgery may have a high rate of failure require revision or more invasive treatments . Respiratory |
compromise | Management per pulmonologist | — |
Skin lesions | Dermatologic management w/emollients keratolytics | Sun protection for those w/ichthyosis; emollient use can increase risk of sunburn. Ocular anomalies |
Recommended Surveillance for Individuals with Chondrodysplasia Punctata 2, X-Linked System/Concern | Evaluation | Frequency |
Musculoskeletal | Orthopedic evaluation | Frequency per orthopedist to monitor kyphoscoliosis or joint problems assess linear growth any leg length discrepancy; Scoliosis can progress rapidly. |
Integument | Dermatology evaluation | Frequency per dermatologist |
Eyes | Ophthalmology evaluation | Frequency per ophthalmologist |
Hearing | Audiology evaluation | As clinically indicated |
Renal | Renal ultrasound | Frequency per nephrologist to monitor hydronephrosis if present Miscellaneous/ |
Other | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination. | Each visit Adequate sun protection is recommended for individuals with ichthyosis, who are at risk of dehydration secondary to overheating during prolonged sun exposure. Furthermore, care must be taken with use of emollients (which are oil based) and direct sun exposure, which can lead to sunburn. |