Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
L-Arginine:glycine amidinotransferase (AGAT) deficiency is a very rare type of creatine deficiency sydrome characterized by global developmental delay, intellectual disability, and myopathy.
Features include always present findings: Reduced tissue arginine:glycine amidinotransferase activity; and sometimes findings: Gowers sign. 10 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 4 | Delayed speech and language development, Global developmental delay, Reduced brain creatine level by MRS |
Growth and development | 1 | Failure to thrive |
Muscles | 1 | Gowers sign |
Kidneys and urinary system | 1 | Decreased urinary creatine level |
Lab test results | 1 | Decreased urinary creatine level |
Developmental delay, cognitive dysfunction, and intellectual disability are common to all three creatine deficiency disorders (CDDs). See for comparison of the three deficiencies; further details follow the table. Table 2. Creatine Deficiency Disorders: Comparison of Phenotypes by Select Features
Feature | GAMT Deficiency1 | AGAT Deficiency2 | CRTR Deficiency3 |
|---|---|---|---|
Epilepsy | NR | — | — |
Behavior problems | Muscle weakness / |
GATM encodes glycine amidinotransferase (423 aa). Transamidinase that catalyzes the transfer of the amidino group of L-arginine onto the amino moiety of acceptor metabolites such as glycine, beta-alanine, gamma-aminobutyric acid (GABA) and taurine yielding the corresponding guanidine derivatives. Highest expression in Pancreas (589.5 TPM) and Liver (322.8 TPM).
AGAT deficiency is caused by mutations in the GATM gene on chromosome 15.
GATM is classified as a druggable target (Enzyme and Transporter categories) with score 3.5.
No clinically relevant genotype-phenotype correlations for any of the CDDs have been identified.
Source: GeneReviews — "Creatine Deficiency Disorders"
The creatine deficiency disorders (CDDs) are inborn errors of creatine metabolism and transport that comprise:
Two creatine biosynthesis defects (both inherited in an autosomal recessive manner):
Guanidinoacetate methyltransferase (GAMT) deficiency
L-arginine:glycine amidinotransferase (AGAT) deficiency
One creatine transporter defect (inherited in an X-linked manner): creatine transporter (CRTR) deficiency
A CDD should be suspected in probands with the following clinical, biochemical, and imaging findings and family history.
Clinical findings
Source: GeneReviews — "Creatine Deficiency Disorders"
Disorders summarized in should be considered in individuals with partial creatine deficiency in the brain detected by 1H-MRS, who have normal concentrations of guanidinoacetate (GAA) in the urine, plasma, and CSF and a normal creatine-to-creatinine ratio in urine.
Table 3.
Disorders of Interest in the Differential Diagnosis of Creatine Deficiency Disorders
Gene | Disorder | MOI | Biochemical Features | Clinical Features
| P5CS deficiency1 (See Neurocutaneous Disorders due to Mitochondrial Proline Synthesis Defects.) | ARAD | Secondary (cerebral) creatine deficiency | Dysmorphic features, DD, spasticity, myopathy, slow growth
Source: GeneReviews — "Creatine Deficiency Disorders"
Genetic testing for GATM is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for AGAT deficiency has been reported in the published literature.
No approved treatments are currently available for AGAT deficiency. The disease remains an area of unmet medical need.
No clinical practice guidelines for creatine deficiency disorders (CDDs) have been published. Some of the references list management recommendations for GAMT and CRTR deficiencies .
To establish the extent of disease and needs in an individual diagnosed with a CDD, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 4.
Recommended Evaluations Following Initial Diagnosis in Individuals with Creatine Deficiency Disorders
System/Concern | Evaluation | Comment
| Neurologic eval | • Brain 1H-MRS to document creatine deficiency if not done as part of diagnosis
EEG if any clinical seizures or suspicion of seizures
| Developmental/neuropsychologic assessment | • Incl motor, adaptive, cognitive, speech-language eval
Eval for early intervention/ special education
Eval of cognitive functions w/objective tests to measure IQ
Movement
disorder1 | • Orthopedics/ physical medicine rehab/ PT/OT eval
Video documentation of mvmt disorder
| Incl assessment of:
Gross motor fine motor skills
Mobility, ADL, need for adaptive devices
Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills)
| Neurobehavioral eval | For persons age 12 mos screening for:
Behavior concerns
Sleep disturbances
ADHD
Anxiety
Findings suggestive of ASD
Potential for
treatment-assoc
nephropathy | Baseline kidney function studies | • Blood urea
Source: GeneReviews — "Creatine Deficiency Disorders"
There are no current clinical trials for any of the CDDs. Some pharmacotherapies are being investigated in cell lines or animal models of CRTR deficiency:
Source: GeneReviews — "Creatine Deficiency Disorders"
1 trial found
Surveillance recommendations for CDDs are summarized in .
Table 9.
Recommended Surveillance for Individuals with Creatine Deficiency Disorders
System/Concern | Evaluation | Frequency
| Monitor developmental progress educational needs. | At each visit
| Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, mvmt disorders, behavioral problems.
For those
undergoing
treatment of
low cerebral
creatine levels | Determination of cerebral creatine level by in vivo 1H-MRS | • For those w/GAMT or AGAT deficiency: to monitor cerebral creatine levels during creatine supplementation therapy
For those w/CRTR deficiency: to monitor cerebral creatine levels for assessment of treatment outcome
Assess kidney function (GFR) while on creatine supplementation therapy to detect possible creatine-assoc nephropathy in GAMT, AGAT, CRTR deficiencies. | Annually
For GAMT deficiency, assess:
Growth nutritional status;
Plasma GAA levels, plasma amino acids, ammonia, protein, albumin, pre-albumin levels.
| Every 3-6 mos
For AGAT deficiency, no surveillance labs needed |
For CRTR deficiency, assess plasma GAA levels plasma amino acids.1 | Every 3-6 mos
GAA = guanidinoacetate; GFR = glomerular filtration rate
1. High-dose arginine and glycine supplementation can result in increased GAA levels.
Source: GeneReviews — "Creatine Deficiency Disorders"
Phenotype severity distribution: 1 always present feature.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
11 publications have been identified in PubMed for AGAT deficiency. Research spans Case Report / Case Series (27%), Basic Science / Preclinical (18%), and Epidemiology / Natural History (18%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 3 | 27% |
Laboratory research | 2 | 18% |
Disease patterns and progression | 2 | 18% |
Other research | 1 | 9% |
Testing and diagnosis research | 1 | 9% |
Research summaries | 1 | 9% |
New treatment approaches | 1 | 9% |
Li S (2026). [PMID: 41909124](https://pubmed.ncbi.nlm.nih.gov/41909124/). *Front Cell Dev Biol*. [Basic Science / Preclinical]
Duan J (2025). [PMID: 40397838](https://pubmed.ncbi.nlm.nih.gov/40397838/). *Neurology*. [Diagnostic / Biomarker]
Fortunato F (2025). [PMID: 40323733](https://pubmed.ncbi.nlm.nih.gov/40323733/). *Epilepsia*. [Other]
Wells C (2025). [PMID: 40338959](https://pubmed.ncbi.nlm.nih.gov/40338959/). *PloS one*. [Gene Therapy / Novel Therapeutics]
Wallis H (2025). [PMID: 40078706](https://pubmed.ncbi.nlm.nih.gov/40078706/). *Frontiers in neuroscience*. [Case Report / Case Series]
Ferretti A (2025). [PMID: 40674085](https://pubmed.ncbi.nlm.nih.gov/40674085/). *Epilepsia*. [Epidemiology / Natural History]
Lee A (2024). [PMID: 39684202](https://pubmed.ncbi.nlm.nih.gov/39684202/). *International journal of molecular sciences*. [Case Report / Case Series]
Fernandes-Pires G (2024). [PMID: 38745894](https://pubmed.ncbi.nlm.nih.gov/38745894/). *Molecular therapy. Methods & clinical development*. [Basic Science / Preclinical]
Portales-Castillo I (2024). [PMID: 39544690](https://pubmed.ncbi.nlm.nih.gov/39544690/). *JIMD reports*. [Case Report / Case Series]
Goldstein J (2024). [PMID: 38452609](https://pubmed.ncbi.nlm.nih.gov/38452609/). *Molecular genetics and metabolism*. [Review / Meta-Analysis]
Data assembled from 9 of 12 sources · Last updated Sep 18, 2026, 7:28 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about AGAT deficiency
—
— |
Myopathy | NR | NR | — |
Movement disorder | NR | = all; = common; = infrequent; AGAT = L-arginine:glycine amidinotransferase; CRTR = creatine transporter; DD = developmental delay; GAMT = guanidinoacetate methyltransferase; NR = not reported 1. , 2. , 3. | — |
Source: GeneReviews — "Creatine Deficiency Disorders"
AI-curated news mentioning AGAT deficiency
Updated Jul 8, 2026
A new treatment for children aged 2 or older with sickle cell disease has been approved by the U.S. Food & Drug Administration. In a press release on Wednesday, the FDA announced it had approved Casgevy, the first gene therapy for children with sickle cell disease. (NewsNation) — A new treatment for children aged 2 or older with sickle cell disease has been approved by the Food & Drug Administration (FDA). In a Wednesday news release, the FDA announced it had approved Casgevy, the first gene therapy for children with the disease. “Casgevy is a gene therapy consisting of the patient’s own (autologous) hematopoietic (blood) stem cells, administered as a one-time single dose for intravenous infusion,” the release noted. “Pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases,” Karim Mikhail, the acting director of the Center for Biologics Evaluation and Research, wrote. “These disorders carry a heavy burden for children and their families, affecting growth, development, and long-term health in profound ways,” Megha Kaushal, acting deputy director of the Office of Therapeutic Products in CBER, said in the release.