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A creatine deficiency syndrome characterized by global developmental delay/intellectual disability (DD/ID), prominent speech delay, autistic/hyperactive behavioral disorders, seizures, and various types of pyramidal and/or extra-pyramidal manifestations.
Features include always present findings: Elevated circulating guanidinoacetic acid concentration, Elevated brain guanidinoacetate level by MRS, Delayed speech and language development, and Reduced tissue guanidinoacetate methyltransferase activity and others; and very common findings: Seizure. 43 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 30 | Bilateral tonic-clonic seizure, Seizure, Muscle stiffness (rigidity) |
Lab test results | 2 | Elevated circulating guanidinoacetic acid concentration, Decreased urinary creatine level |
Kidneys and urinary system | 2 | Decreased urinary creatine level, Decreased serum creatinine |
Muscles | 1 | Low muscle tone (hypotonia) |
Arms and legs | 1 | Lower limb spasticity |
Digestive system | 1 | Episodic vomiting |
Developmental delay, cognitive dysfunction, and intellectual disability are common to all three creatine deficiency disorders (CDDs). See for comparison of the three deficiencies; further details follow the table. Table 2. Creatine Deficiency Disorders: Comparison of Phenotypes by Select Features
Feature | GAMT Deficiency1 | AGAT Deficiency2 | CRTR Deficiency3 |
|---|---|---|---|
Epilepsy | NR | — | — |
Behavior problems | Muscle weakness / |
GAMT encodes guanidinoacetate N-methyltransferase (236 aa). Converts guanidinoacetate to creatine, using S-adenosylmethionine as the methyl donor. Important in nervous system development Highest expression in Muscle Skeletal (238.2 TPM) and Liver (193.0 TPM).
Guanidinoacetate methyltransferase deficiency is caused by mutations in the GAMT gene on chromosome 19.
The GAMT protein participates in GAMT gene expression is stimulated by MECP2 pathway.
GAMT is classified as a druggable target (Transporter category) with score 52.2.
No clinically relevant genotype-phenotype correlations for any of the CDDs have been identified.
Source: GeneReviews — "Creatine Deficiency Disorders"
The creatine deficiency disorders (CDDs) are inborn errors of creatine metabolism and transport that comprise:
Two creatine biosynthesis defects (both inherited in an autosomal recessive manner):
Guanidinoacetate methyltransferase (GAMT) deficiency
L-arginine:glycine amidinotransferase (AGAT) deficiency
One creatine transporter defect (inherited in an X-linked manner): creatine transporter (CRTR) deficiency
A CDD should be suspected in probands with the following clinical, biochemical, and imaging findings and family history.
Clinical findings
Source: GeneReviews — "Creatine Deficiency Disorders"
Disorders summarized in should be considered in individuals with partial creatine deficiency in the brain detected by 1H-MRS, who have normal concentrations of guanidinoacetate (GAA) in the urine, plasma, and CSF and a normal creatine-to-creatinine ratio in urine.
Table 3.
Disorders of Interest in the Differential Diagnosis of Creatine Deficiency Disorders
Gene | Disorder | MOI | Biochemical Features | Clinical Features
| P5CS deficiency1 (See Neurocutaneous Disorders due to Mitochondrial Proline Synthesis Defects.) | ARAD | Secondary (cerebral) creatine deficiency | Dysmorphic features, DD, spasticity, myopathy, slow growth
Source: GeneReviews — "Creatine Deficiency Disorders"
Genetic testing for GAMT is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for guanidinoacetate methyltransferase deficiency has been reported in the published literature.
No approved treatments are currently available for guanidinoacetate methyltransferase deficiency. An additional 1 compound holds orphan drug designation.
While no drugs are FDA-approved specifically for guanidinoacetate methyltransferase deficiency, some of the following designated compounds may be used off-label in clinical practice. Treatment decisions should be made in consultation with a specialist familiar with this condition.
The following drugs have received orphan drug designation from the FDA for guanidinoacetate methyltransferase deficiency. Orphan designation reflects regulatory interest and does not indicate approval for treatment.
Brand Name | Generic Name | Sponsor | Designated | Exclusivity End | Designation Status |
|---|---|---|---|---|---|
adeno-associated vector expressing human codon-optimized guanidinoacetate N-methyltransferase under a ubiquitous-expressing promoter | adeno-associated vector expressing human codon-optimized guanidinoacetate N-methyltransferase under a ubiquitous-expressing promoter | Ronald Reagan UCLA Medical Center | 2025 | — | Designated |
No clinical practice guidelines for creatine deficiency disorders (CDDs) have been published. Some of the references list management recommendations for GAMT and CRTR deficiencies .
To establish the extent of disease and needs in an individual diagnosed with a CDD, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 4.
Recommended Evaluations Following Initial Diagnosis in Individuals with Creatine Deficiency Disorders
System/Concern | Evaluation | Comment
| Neurologic eval | • Brain 1H-MRS to document creatine deficiency if not done as part of diagnosis
EEG if any clinical seizures or suspicion of seizures
| Developmental/neuropsychologic assessment | • Incl motor, adaptive, cognitive, speech-language eval
Eval for early intervention/ special education
Eval of cognitive functions w/objective tests to measure IQ
Movement
disorder1 | • Orthopedics/ physical medicine rehab/ PT/OT eval
There are no current clinical trials for any of the CDDs. Some pharmacotherapies are being investigated in cell lines or animal models of CRTR deficiency:
Source: GeneReviews — "Creatine Deficiency Disorders"
1 trial found
Surveillance recommendations for CDDs are summarized in .
Table 9.
Recommended Surveillance for Individuals with Creatine Deficiency Disorders
System/Concern | Evaluation | Frequency
| Monitor developmental progress educational needs. | At each visit
| Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, mvmt disorders, behavioral problems.
For those
undergoing
treatment of
low cerebral
creatine levels | Determination of cerebral creatine level by in vivo 1H-MRS | • For those w/GAMT or AGAT deficiency: to monitor cerebral creatine levels during creatine supplementation therapy
For those w/CRTR deficiency: to monitor cerebral creatine levels for assessment of treatment outcome
Assess kidney function (GFR) while on creatine supplementation therapy to detect possible creatine-assoc nephropathy in GAMT, AGAT, CRTR deficiencies. | Annually
For GAMT deficiency, assess:
Growth nutritional status;
Plasma GAA levels, plasma amino acids, ammonia, protein, albumin, pre-albumin levels.
| Every 3-6 mos
For AGAT deficiency, no surveillance labs needed |
For CRTR deficiency, assess plasma GAA levels plasma amino acids.1 | Every 3-6 mos
GAA = guanidinoacetate; GFR = glomerular filtration rate
1. High-dose arginine and glycine supplementation can result in increased GAA levels.
Source: GeneReviews — "Creatine Deficiency Disorders"
Phenotype severity distribution: 5 always present features, 1 very common feature, 10 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
18 publications have been identified in PubMed for guanidinoacetate methyltransferase deficiency. Research spans Case Report / Case Series (33%), Review / Meta-Analysis (28%), and Diagnostic / Biomarker (17%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 6 | 33% |
Research summaries | 5 | 28% |
Testing and diagnosis research | 3 | 17% |
Laboratory research | 3 | 17% |
New treatment approaches | 1 | 6% |
Binsfeld R (2026). [PMID: 41596680](https://pubmed.ncbi.nlm.nih.gov/41596680/). *International journal of molecular sciences*. [Gene Therapy / Novel Therapeutics]
Maddahi B (2026). [PMID: 41489599](https://pubmed.ncbi.nlm.nih.gov/41489599/). *Epileptic disorders : international epilepsy journal with videotape*. [Case Report / Case Series]
Wallis H (2025). [PMID: 40078706](https://pubmed.ncbi.nlm.nih.gov/40078706/). *Front Neurosci*. [Case Report / Case Series]
Silverman A (2025). [PMID: 40228183](https://pubmed.ncbi.nlm.nih.gov/40228183/). *Neurology*. [Case Report / Case Series]
Schifino M (2025). [PMID: 40543028](https://pubmed.ncbi.nlm.nih.gov/40543028/). *Epilepsia open*. [Case Report / Case Series]
Lee A (2025). [PMID: 40330029](https://pubmed.ncbi.nlm.nih.gov/40330029/). *JIMD reports*. [Case Report / Case Series]
Zhao TT (2025). [PMID: 40105081](https://pubmed.ncbi.nlm.nih.gov/40105081/). *Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics*. [Review / Meta-Analysis]
Abdullah KG (2025). [PMID: 41000912](https://pubmed.ncbi.nlm.nih.gov/41000912/). *bioRxiv : the preprint server for biology*. [Basic Science / Preclinical]
Chanda G (2025). [PMID: 40397839](https://pubmed.ncbi.nlm.nih.gov/40397839/). *Neurology*. [Diagnostic / Biomarker]
Biagiotti S (2025). [PMID: 41373441](https://pubmed.ncbi.nlm.nih.gov/41373441/). *International journal of molecular sciences*. [Review / Meta-Analysis]
Data assembled from 10 of 12 sources · Last updated Sep 19, 2026, 4:12 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
—
— |
Myopathy | NR | NR | — |
Movement disorder | NR | = all; = common; = infrequent; AGAT = L-arginine:glycine amidinotransferase; CRTR = creatine transporter; DD = developmental delay; GAMT = guanidinoacetate methyltransferase; NR = not reported 1. , 2. , 3. | — |
Source: GeneReviews — "Creatine Deficiency Disorders"
Video documentation of mvmt disorder
| Incl assessment of:
Gross motor fine motor skills
Mobility, ADL, need for adaptive devices
Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills)
| Neurobehavioral eval | For persons age 12 mos screening for:
Behavior concerns
Sleep disturbances
ADHD
Anxiety
Findings suggestive of ASD
Potential for
treatment-assoc
nephropathy | Baseline kidney function studies | • Blood urea
Source: GeneReviews — "Creatine Deficiency Disorders"