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A rare genetic disease characterized by cerebellar ataxia, cytopenias and predisposition to bone marrow failure and myeloid leukemia. Neurologic features variably include slowly progressive cerebellar ataxia or balance impairment with cerebellar atrophy and periventricular white matter T2 hyperintensities in brain MRI, horizontal and vertical nystagmus, dysmetria, dysarthria, pyramidal tract signs and reduced nerve conduction velocity. Hematological abnormalities are variable and may be intermittent and include cytopenias of all cell lineages, immunodeficiency, myelodysplasia and acute myeloid leukemia.
Features include sometimes findings: Distal sensory impairment and Abnormal brain white matter (abnormal cerebral white matter morphology). 19 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 6 | Babinski sign, Dysarthria, Ataxia |
SAMD9L function has not been fully characterized.
Ataxia-pancytopenia syndrome is associated with mutations in the SAMD9L gene on chromosome 7.
With respect to validated pathogenic variants in SAMD9L, no genotype-phenotype correlations have been observed.
Formal clinical diagnostic criteria for SAMD9L ataxia-pancytopenia (ATXPC) syndrome have not been established.
SAMD9L-ATXPC syndrome should be suspected in individuals with one or more of the following clinical, imaging, and family history findings.
Clinical features
Cerebellar ataxia
No approved treatments are currently available for ataxia-pancytopenia syndrome. The disease remains an area of unmet medical need.
To establish the extent of disease and guide clinical care in an individual diagnosed with SAMD9L ataxia-pancytopenia (ATXPC) syndrome, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended.
Table 4.
Recommended Evaluations Following Initial Diagnosis in Individuals with SAMD9L Ataxia-Pancytopenia Syndrome
Table 6.
Recommended Surveillance for Individuals with SAMD9L Ataxia-Pancytopenia Syndrome
System/Concern | Evaluation | Frequency
Hematologic/
| Complete blood count | At lease annually1
No clinical trials have been registered for ataxia-pancytopenia syndrome.
2 publications have been identified in PubMed for ataxia-pancytopenia syndrome. Research spans Case Report / Case Series (50%) and Basic Science / Preclinical (50%).
Cammenga J (2024). [PMID: 38649131](https://pubmed.ncbi.nlm.nih.gov/38649131/). *Experimental hematology*. [Basic Science / Preclinical]
Zingariello CD (2024). [PMID: 38594844](https://pubmed.ncbi.nlm.nih.gov/38594844/). *Movement disorders clinical practice*. [Case Report / Case Series]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 11:57 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
5 |
Hypoplastic anemia, Low red blood cell count (anemia), Low platelet count (thrombocytopenia) |
Muscles | 2 | Hyperactive deep tendon reflexes, Shrinkage of the cerebellum (cerebellar atrophy) |
Arms and legs | 1 | Impaired vibration sensation in the lower limbs |
Eyes | 1 | Nystagmus |
To date, 85 individuals from 36 families have been identified with a pathogenic variant in SAMD9L [; ; ; ; ; ; ; ; ; ; ; ; Author, unpublished data]. In addition, approximately 15% of children with myelodysplastic syndrome are found to have a germline pathogenic variant in SAMD9L. The following description of the phenotypic features associated with this condition is based on these reports. Table 2. Select Features of SAMD9L Ataxia-Pancytopenia Syndrome
Feature | % of Personsw/Feature | Comment |
|---|---|---|
Neurologic manifestatioms1 | 75%2 | Nystagmus is most frequent; gait ataxia may develop later. |
Bone marrow failure (cytopenias) | ~80%3 | Thrombocytopenia mild red cell macrocytosis are most frequent. |
Myelodysplasia /or monosomy 7q | ~41%3 | — |
Myeloid leukemia | 4%4 | May be an underestimate of risk as MDS or monosomy 7q may trigger HSCT. HSCT = hematopoietic stem cell transplant; MDS = myelodysplasia 1. One or more of nystagmus, ataxia, pyramidal signs, neuropathy, abnormal brain imaging 2. Not all persons had neurologic evaluations or neuroimaging. |
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Given the variable expressivity of both hematologic and neurologic manifestations, the sometimes episodic asymptomatic cytopenias, the paucity of detailed neurologic/neuroimaging evaluations, and the effect of additional somatic genetic events on the hematologic manifestations , it is difficult to estimate the penetrance. However, the majority of persons with a pathogenic variant in SAMD9L will manifest some feature of the syndrome. There is no difference in range of manifestations for males and females. The phenomena of hematopoietic clones with additional genetic alterations repopulating the bone marrow appear to explain striking reports of non-penetrance or spontaneous and long-term disease remission in some affected individuals and some unaffected carrier parents of affected children .
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Myeloid leukemia or myelodysplasia with partial or complete monosomy 7
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Hematologic disorders with neurologic manifestations. See .
Table 3.
Disorders to Consider in the Differential Diagnosis of SAMD9L Ataxia-Pancytopenia Syndrome
Gene(s) | Disorder | MOI | Hematologic Manifestations | Neurologic Manifestations | Other
| X-linked sideroblastic anemia ataxia(OMIM 301310) | XL | • Moderate hypochromic microcytic anemia w/o progression to marrow failure
Not assoc w/malignancy
| Spinocerebellar syndrome in males1 |
ACD
CTC1
DKC1
NHP2
NOP10
PARN
RTEL1
TERC
TERT
TINF2
| Dyskeratosis congenita | XLADAR | • Progressive bone marrow failure
Myelodysplasia
Acute myeloid leukemia
| • Normal psychomotor development neurologic function in most persons
See footnote 2 for exceptions.
| • Dysplastic nails
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Genetic testing for SAMD9L is available. Testing is considered confirmatory for diagnosis.
System/Concern | Evaluation | Comment
Hematologic/
| Complete blood count | To evaluate for anemia, neutropenia, thrombocytopenia, /or myelodysplasia
Bone marrow exam, incl FISH for chromosome 7
Consider referral to hematologist/oncologist.
| If hematologic abnormalities are more than minimal
| Assessment by neurologist for:
Cerebellar motor dysfunction (gait postural ataxia, dysmetria, dysdiadochokinesis, tremor, dysarthria, nystagmus, saccades smooth pursuit)
UMN /or LMN dysfunction (weakness, spasticity, Babinski signs, hyperrefflexia, amyotrophy, fasciculations)
Vibration loss or polyneuropathy based on clinical findings
| • Use standardized scale to establish baseline for ataxia (SARA, ICARS, or BARS).1
Consider electrophysiologic studies (EMG NCS) to detect neurogenic changes or signs of neuropathy if sensory or motor abnormalities are detected.
Brain MRI to evaluate presence severity of cerebellar atrophy
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Nonsteroidal anti-inflammatory agents, anticoagulants, and thrombolytic agents are contraindicated if thrombocytopenia is present and should be used with caution given the fluctuating nature of the cytopenias. Avoid consuming alcohol and medications that cause sedation, which can increase problems with gait and coordination.
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
View trials for ataxia-pancytopenia syndrome
Monitor ataxia progression w/standardized scale (SARA, ICARS, or BARS).2
Physiatry, OT/PT assessment of mobility, self-help skills as they relate to ataxia peripheral neuropathy
| Annually
| Need for alternative communication method or speech therapy | Per symptom progression
| Assess aspiration risk feeding methods. | Per symptom progression
BARS = Brief Ataxia Rating Scale; ICARS = International Co-operative Ataxia Rating Scale; OT = occupational therapy; PT = physical therapy; SARA = Scale for the Assessment and Rating of Ataxia
1. More frequent monitoring is required if an affected individual develops signs or symptoms of a cytopenia (e.g., fatigue, pallor, unexpected bleeding, recurrent infections) or if cytopenias are identified.
2.
Source: GeneReviews — "SAMD9L Ataxia-Pancytopenia Syndrome"
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).