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Birk-Barel syndrome is an inherited condition characterized by intellectual disability, hypotonia, hyperactivity, and unusual facial features. The condition is caused by mutations in the KCNK9 gene on chromosome 8. This condition demonstrates dominant inheritance with paternal imprinting, which means that a mutation in the maternal gene will result in disease, but a mutation in the paternal gene will have no effect (imprinted with paternal silencing).
Features include always present findings: Narrow forehead, Global developmental delay, and Feeding difficulties in infancy; and common findings: Submucous cleft soft palate, Tented upper lip vermilion, Long face, and Microretrognathia and others. 18 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Head and neck | 4 | Submucous cleft soft palate, Tented upper lip vermilion, Long face |
Brain and nerves | 3 | Difficulty swallowing (dysphagia), Global developmental delay, Intellectual disability |
Digestive system | 2 | Difficulty swallowing (dysphagia), Feeding difficulties in infancy |
Muscles | 1 | Low muscle tone (hypotonia) |
Skin | 1 | Reduced subcutaneous adipose tissue |
Age of onset: infancy.
KCNK9 imprinting syndrome is characterized by congenital central hypotonia, severe feeding difficulties, delayed development/intellectual disability, and dysmorphic features. To date 19 individuals with a molecularly confirmed diagnosis have been reported: 15 from an Arab-Israeli family and four representing simplex cases (i.e., a single occurrence in a family) . Note that 15 individuals from the original family were reexamined for the report by . The phenotype has been severe and consistent in all individuals examined to date. Congenital central hypotonia, evident in neonates, is associated with decreased movement, lethargy, weak cry, weak facial muscles, poor suck, and feeding difficulties.
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
KCNK9 encodes potassium two pore domain channel subfamily K member 9 (374 aa). K(+) channel that conducts voltage-dependent outward rectifying currents upon membrane depolarization. Highest expression in Brain Cerebellum (62.6 TPM) and Brain Cerebellar Hemisphere (59.8 TPM).
Birk-Barel syndrome is associated with mutations in the KCNK9 gene on chromosome 8.
KCNK9 is classified as a druggable target (Druggable Genome and Ion Channel categories) with score 4.4.
Penetrance for maternally inherited pathogenic variants in KCNK9 appears to be complete; however, the number of affected individuals with a molecularly confirmed diagnosis is so limited that no conclusions can be made at present.
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
Consensus clinical diagnostic criteria for the KCNK9 imprinting syndrome have not been established.
KCNK9 imprinting syndrome should be suspected in individuals with normal brain imaging and the following clinical findings:
Congenital central hypotonia and persistent generalized weakness
Severe feeding difficulties, often requiring placement of gastrostomy tube.
Delayed development / intellectual disability
The diagnosis of the KCNK9 imprinting syndrome is established in a proband with and the heterozygous KCNK9 p.Gly236Arg pathogenic variant on the maternal allele detected by molecular genetic testing . To date, it is unknown if other KCNK9 pathogenic variants can cause the same phenotype.
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
A number of disorders can mimic some aspects of the KCNK9 phenotype. See . Table 2. Disorders to Consider in the Differential Diagnosis of KCNK9 Imprinting Syndrome
Disorder | Genetic Mechanism | MOI | Clinical Features of Differential Diagnosis Disorder |
|---|---|---|---|
Congenital myotonic dystrophy type 1 | 1000 CTG trinucleotide repeat expansion in DMPK1 | AD | Hypotonia severe generalized weakness at birth; Intellectual disability |
Usually no cleft palate Prader-Willi syndrome (PWS) |
Genetic testing for KCNK9 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for Birk-Barel syndrome. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with KCNK9 imprinting syndrome, the evaluations following diagnosis summarized (if not performed as part of the evaluation that led to diagnosis) are recommended. Table 3. Recommended Evaluations Following Initial Diagnosis of KCNK9 Imprinting Syndrome
System/Concern | Evaluation | Comment |
|---|---|---|
Oropharynx | Assessment by cleft/craniofacial team if cleft palate, bifid uvula, or velopharyngeal insufficiency is present | — |
Feeding | Feeding swallowing eval | Consider gastrosotomy tube placement if clinically indicated by significant microretrognathia /or recurrent aspiration. |
Pulmonary | Polysomnogram if obstructive apnea is suspected | — |
Musculoskeletal | Eval for skeletal manifestations (i.e., joint contractures, scoliosis) | Consider referral to orthopedist if indicated. Neurologic |
Endocrine | Assess for hypoglycemia during neonatal period infancy. | If present, consider consultation w/endocrinologist to discuss possible treatment w/diazoxide. Miscellaneous/ Other |
Treatment of Manifestations in Individuals with KCNK9 Imprinting Syndrome Manifestation/Concern | Treatment | Considerations/Other |
Lacrimal duct obstruction | Tear duct massage; consider lacrimal duct stent placement. | — |
Cleft palate, bifid uvula, or velopharyngeal insufficiency | Mgmt by cleft/craniofacial team; retrognathia underdevelopment of mandible may require mandibular distraction osteogenesis. | — |
Obstructive sleep apnea | CPAP or BiPAP; ENT eval for tonsillectomy/adenoidectomy | Pulmonary consultation; consider treatment w/mefanamic or flufenamic acid (See .) |
Feeding difficulties or signs of aspiration | Use of a special nipple or bottle w/cleft palate; short-term nasogastric feeding tube; consideration of gastrostomy tube | — |
Gastroesophageal reflux disease | Standard positioning pharmacologic treatment | — |
Musculoskeletal findings (i.e., contractures, scoliosis) | Ankle-foot orthoses or other assistive devices; standard treatment for scoliosis | PT /or OT eval; consultation w/orthopedist |
Seizure disorder | Eval of blood sugar electrolytes; standard treatment for seizures | Consider EEG referral to neurologist. |
Unexplained hypoglycemia or suspected hyperinsulinism | Consideration of diazoxide therapy | Consider referral to an endocrinologist. |
Developmental delay | Early referral for developmental support/special education, which may incl: PT, OT, speech therapy, /or cognitive therapy | Consider referral to neurodevelopmental specialist /or neuropsychiatric testing. OT = occupational therapy; PT = physical therapy Surveillance Table 5. |
Recommended Surveillance for Individuals with KCNK9 Imprinting Syndrome System/Concern | Evaluation | Frequency/Comment |
Growth | Eval of nutritional status growth | Every 6 mos until age 2 yrs, then annually |
Eyes | Ophthalmology assessment for lacrimation risk for corneal dryness | At least annually |
ENT/Mouth | Eval of feeding difficulties | Every 6 mos until age 2 yrs, then annually |
Respiratory | Sleep study (if history of sleep disturbance) | Pulmonary eval every 6 mos until age 2 yrs, then annually |
Musculoskeletal | Eval for scoliosis | At least annually |
Endocrine | Monitor serum glucose levels for hypoglycemia secondary to poor feeding risk for hyperinsulinemia. | Every 6 mos until age 2 yrs Evaluation of Relatives at Risk See for issues related to testing of at-risk relatives for genetic counseling purposes. |
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
KCNK9, which is imprinted and expressed from the maternal allele with paternal silencing, encodes a member of the two pore-domain potassium channel (K2p9.1 or TASK3). The only KCNK9 pathogenic variant reported to date, p.Gly236Arg, reduces the outward current of the TASK3 channel by approximately 80% . Three members of the nonsteroidal anti-inflammatory fenamic acid class of drugs – flufenamic acid (FFA), niflumic acid (NFA) and mefanamic acid (MFA) – have been shown to stimulate two pore-domain potassium channels . The reduced outward current through abnormal p.Arg236-containing TASK3 channels has been shown to be partially rescued by FFA, suggesting that fenamic acid compounds could be useful in treating this condition .
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
View trials for Birk-Barel syndrome
Table 5. Recommended Surveillance for Individuals with KCNK9 Imprinting Syndrome
System/Concern | Evaluation | Frequency/Comment |
|---|---|---|
Growth | Eval of nutritional status growth | Every 6 mos until age 2 yrs, then annually |
Eyes | Ophthalmology assessment for lacrimation risk for corneal dryness | At least annually |
ENT/Mouth | Eval of feeding difficulties | Every 6 mos until age 2 yrs, then annually |
Respiratory | Sleep study (if history of sleep disturbance) | Pulmonary eval every 6 mos until age 2 yrs, then annually |
Musculoskeletal | Eval for scoliosis | At least annually |
Endocrine | Monitor serum glucose levels for hypoglycemia secondary to poor feeding risk for hyperinsulinemia. | Every 6 mos until age 2 yrs |
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
Phenotype severity distribution: 3 always present features, 8 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for Birk-Barel syndrome.
4 publications have been identified in PubMed for Birk-Barel syndrome. Kisho has analyzed 3 by research type. Research spans Case Report / Case Series (67%) and Basic Science / Preclinical (33%).
Verhoeven W (2026). [PMID: 41867391](https://pubmed.ncbi.nlm.nih.gov/41867391/). *Int Med Case Rep J*. [Case Report / Case Series]
Hall PR (2025). [PMID: 39637865](https://pubmed.ncbi.nlm.nih.gov/39637865/). *Structure*. [Basic Science / Preclinical]
Piekutowska-Abramczuk D (2025). [PMID: 40008859](https://pubmed.ncbi.nlm.nih.gov/40008859/). *Neurol Neurochir Pol*. [Case Report / Case Series]
Data assembled from 7 of 12 sources · Last updated Sep 18, 2026, 10:22 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about Birk-Barel syndrome
See footnote 2. |
Severe hypotonia feeding difficulties in early infancy; Delayed motor milestones language development; some degree of cognitive impairment in all persons |
22q11.2 deletion syndrome | Deletion of genes w/in the DiGeorge chromosome region | AD | Palatal abnormalities; Characteristic facial features; Learning difficulties; Immune deficiency; Hypocalcemia w/significant feeding swallowing problems |
Source: GeneReviews — "KCNK9 Imprinting Syndrome"
AI-curated news mentioning Birk-Barel syndrome
Updated Jul 8, 2026
A new treatment for children aged 2 or older with sickle cell disease has been approved by the U.S. Food & Drug Administration. In a press release on Wednesday, the FDA announced it had approved Casgevy, the first gene therapy for children with sickle cell disease. (NewsNation) — A new treatment for children aged 2 or older with sickle cell disease has been approved by the Food & Drug Administration (FDA). In a Wednesday news release, the FDA announced it had approved Casgevy, the first gene therapy for children with the disease. “Casgevy is a gene therapy consisting of the patient’s own (autologous) hematopoietic (blood) stem cells, administered as a one-time single dose for intravenous infusion,” the release noted. “Pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases,” Karim Mikhail, the acting director of the Center for Biologics Evaluation and Research, wrote. “These disorders carry a heavy burden for children and their families, affecting growth, development, and long-term health in profound ways,” Megha Kaushal, acting deputy director of the Office of Therapeutic Products in CBER, said in the release.
etiological diagnosis and disease course of birk barel syndrome in an adult woman with a kcnk9 variant