Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
An autosomal dominant disease characterized by macrocephaly, facial phenotypes including square outline with frontal bossing, 'dished-out' midface, biparietal narrowing, and long philtrum, developmental delay and autism that has material basis in heterozygous mutation in the PTEN gene on chromosome 10q23.
Features include always present findings: Postnatal macrocephaly and Autism; and common findings: Epicanthus, Low muscle tone (hypotonia), Penile freckling, and Prominent forehead and others. 33 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 5 | Intellectual disability, Delayed speech and language development, Global developmental delay |
PTEN function has not been fully characterized.
Macrocephaly-autism syndrome is associated with mutations in the PTEN gene on chromosome 10.
For purposes of PTEN genotype-phenotype analyses, a series of 37 unrelated probands with CS were ascertained by the operational diagnostic criteria of the International Cowden Consortium, 1995 version . Association analyses revealed that families with CS and a germline PTEN pathogenic variant are more likely to develop malignant breast disease than are families who do not have a PTEN pathogenic variant . In addition, pathogenic missense variants and others 5' to or within the phosphatase core motif appeared to be associated with involvement of five or more organs, a surrogate phenotype for severity of disease . More than 90% of families that included individuals with CS and also individuals with BRRS were found to have a germline PTEN pathogenic variant.
The PTEN hamartoma tumor syndrome (PHTS) includes Cowden syndrome (CS), Bannayan-Riley-Ruvalcaba syndrome (BRRS), PTEN-related Proteus syndrome (PS), and PTEN-related Proteus-like syndrome. PTEN hamartoma tumor syndrome (PHTS) should be suspected in individuals with the following clinical features.
Based on more than 3,000 prospectively accrued cases of CS or Cowden-like syndrome (CLS) from the community, a scoring system (which can be found online) that takes into account phenotype and age at diagnosis has been developed. The scoring system allows input of clinical information on an individual suspected of having CS/CLS and subsequently generates the prior probability of finding a PTEN pathogenic variant.
No approved treatments are currently available for macrocephaly-autism syndrome. The disease remains an area of unmet medical need.
To establish the extent of disease and needs of an individual diagnosed with PTEN hamartoma tumor syndrome (PHTS), the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. The most serious consequences of PHTS relate to the increased risk of cancers including breast, thyroid, endometrial, renal, and to a lesser extent, colon. In this regard, the most important aspect of management of any individual with a PTEN pathogenic variant is increased cancer surveillance to detect any tumors at the earliest, most treatable stages. Current suggested screening and surveillance by age are detailed in .
Phenotype severity distribution: 2 always present features, 19 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for macrocephaly-autism syndrome.
6 publications have been identified in PubMed for macrocephaly-autism syndrome. Research spans Case Report / Case Series (67%) and Review / Meta-Analysis (33%).
Moreno Fernandes M (2026). [PMID: 41646565](https://pubmed.ncbi.nlm.nih.gov/41646565/). *Cureus*. [Case Report / Case Series]
Sihaklang B (2026). [PMID: 42106060](https://pubmed.ncbi.nlm.nih.gov/42106060/). *Eur J Med Genet*. [Case Report / Case Series]
Wang L (2025). [PMID: 40756769](https://pubmed.ncbi.nlm.nih.gov/40756769/). *Case reports in medicine*. [Case Report / Case Series]
Lynch DC (2025). [PMID: 39988627](https://pubmed.ncbi.nlm.nih.gov/39988627/). *Prenatal diagnosis*. [Case Report / Case Series]
Genovese AC (2025). [PMID: 41010006](https://pubmed.ncbi.nlm.nih.gov/41010006/). *Genes*. [Review / Meta-Analysis]
Gorlewicz A (2025). [PMID: 39812526](https://pubmed.ncbi.nlm.nih.gov/39812526/). *Acta neurobiologiae experimentalis*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 18, 2026, 9:18 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Digestive system |
2 |
Enlarged liver (hepatomegaly), Enlarged spleen (splenomegaly) |
Head and neck | 2 | Postnatal macrocephaly, High palate |
Blood and immune system | 2 | Recurrent infections, Enlarged spleen (splenomegaly) |
Muscles | 1 | Low muscle tone (hypotonia) |
Bones and joints | 1 | Joint hypermobility |
Ears | 1 | Recurrent otitis media |
PTEN hamartoma tumor syndrome (PHTS) is characterized by hamartomatous tumors and germline PTEN pathogenic variants. Clinically, PHTS includes (CS), (BRRS), (PS), and .
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
More than 90% of individuals with CS have some clinical manifestation of the disorder by the late 20s . By the fourth decade, 99% of affected individuals develop the mucocutaneous stigmata, primarily trichilemmomas and papillomatous papules, as well as acral and plantar keratoses. (See also Clinical Description, for the age at which specific manifestations are likely to become evident.)
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Table 3. Disorders to Consider in the Differential Diagnosis of PTEN Hamartoma Tumor Syndrome
Gene(s) | Disorder | Clinical Characteristics | Comment |
|---|---|---|---|
AKT1 | AKT1-related Proteus syndrome1,2 | Progressive segmental or patchy overgrowth most commonly affecting skeleton, skin, adipose tissue, CNS; development of a range of tumors, pulmonary complications, a striking predisposition to DVT pulmonary embolism | PHTS is assoc w/growth abnormalities w/linear nevi vascular malformations that are clinically molecularly distinct from those of AKT1-related Proteus syndrome. BMPR1A SMAD4 |
Juvenile polyposis syndrome (JPS) | Predisposition to hamartomatous polyps in GI tract (specifically stomach, small intestine, colon, rectum). Untreated polyps may cause bleeding anemia. Most juvenile polyps are benign, but malignant transformation can occur. | Unlike PHTS, polyps usually present by age 20 can reach up to 100 during a lifetime. JPS polyps are juvenile polyps by histology. PHTS polyps carry diverse histology incl epithelial overgrowth, hamartomatous, neuromatous, juvenile, adenomatous. | — |
FLCN | Birt-Hogg-Dub syndrome1 | Cutaneous manifestations (fibrofolliculomas, acrochordons, angiofibromas, oral papules, cutaneous collagenomas, epidermal cysts), pulmonary cysts / history of pneumothorax, various types of renal tumors | Cutaneous lesions can be mistaken for trichilemmomas characteristic of PHTS. Unlike the predominant papillary renal cancers in PHTS, BHD renal cancers have a mixed chromophobe/oncocytic histology. |
NF1 | Neurofibromatosis type 1 (NF1)1 | The only features seen in both NF1 CS/BRRS are caf au lait macules fibromatous tumors of the skin. | NF1 may be mistakenly diagnosed in persons w/CS/BRRS due to presence of ganglioneuromas in GI tract. PTCH1 |
SUFU | Nevoid basal cell carcinoma syndrome (NBCCS)1 | Multiple jaw keratocysts /or basal cell carcinomas; skeletal anomalies; ectopic calcification; in ~60% of persons, a recognizable appearance w/macrocephaly, frontal bossing, coarse facial features, facial milia | Dermatologic findings developmental features in CS NBCCS are quite different. STK11 |
Peutz-Jeghers syndrome | GI polyposis, mucocutaneous pigmentation, cancer predisposition | The P-J polyp has a diagnostic appearance is quite different from CS or JPS hamartomatous polyps. P-J polyps are often symptomatic (intussusception, rectal bleeding); CS polyps are rarely so. | — |
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Genetic testing for PTEN is available. Testing is considered confirmatory for diagnosis.
Table 4.
Recommended Evaluations and Surveillance Following Initial Diagnosis in Individuals with PTEN Hamartoma Tumor Syndrome
System/Concern | Evaluation Surveillance1
| • Complete medical history family history for features of PHTS
Annual comprehensive physical exam starting at age 18 yrs, or 5 yrs before youngest age of diagnosis of a component cancer in family (whichever comes 1st), w/particular attention to thyroid exam
Encourage education re signs symptoms of cancer.
| • Starting at age 18 yrs: consistent breast awareness self-exam; report changes to health care provider.
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Because of the propensity for rapid tissue regrowth and the propensity to form keloid tissue, it is recommended that cutaneous lesions be excised only if malignancy is suspected or symptoms (e.g., pain, deformity) are significant.
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
Although mTOR inhibitors show promise for treatment of malignancies in individuals who have a germline PTEN pathogenic variant, use should be limited to clinical trials. A Phase II open-label clinical trial (NCT00971789) utilized the mTOR inhibitor sirolimus in adults with PHTS and showed evidence of improvement of symptoms throughout the duration of the trial . Another double-blind drug-placebo cross-over clinical trial with the mTOR inhibitor everolimus is completing accrual of pediatric, adolescent, and young adults with germline PTEN pathogenic variants and autism spectrum disorder (NCT02461446). Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "PTEN Hamartoma Tumor Syndrome"
View trials for macrocephaly-autism syndrome