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Features include common findings: Preauricular pit, Enlarged vestibular aqueduct, Cupped ear, and Branchial fistula and others; and sometimes findings: Unilateral renal agenesis, Gustatory lacrimation, Mild global developmental delay, and Microtia and others. 39 total HPO annotations.
Data assembled from 6 of 12 sources · Last updated Sep 19, 2026, 9:42 PM UTC
Online Mendelian Inheritance in Man
Common questions about branchiootorenal syndrome 1
Organ System | Phenotype Count | Example Features |
|---|---|---|
Kidneys and urinary system | 6 | Abnormal renal collecting system morphology, Unilateral renal agenesis, Renal steatosis |
Ears | 6 | Enlarged vestibular aqueduct, Mixed hearing impairment, Incomplete partition of the cochlea type II |
Head and neck | 5 | Facial palsy, High palate, Narrow face |
Brain and nerves | 2 | Abnormal cerebral morphology, Mild global developmental delay |
Digestive system | 2 | Cholesteatoma, Intestinal malrotation |
Pregnancy and birth | 1 | Congenital hip dislocation |
Skin | 1 | Preauricular skin tag |
Branchiootorenal spectrum disorder (BORSD) is characterized by second branchial arch anomalies (e.g., preauricular pits and branchial cleft sinuses or cysts) and malformations of the outer, middle, and inner ear associated with conductive, sensorineural, and/or mixed hearing impairment. Congenital anomalies of the kidney and urinary tract (CAKUT) include kidney agenesis, hypoplasia, and dysplasia as well as urinary tract anomalies such as ureteropelvic junction (UPJ) obstruction, calyceal cysts and/or diverticula, and/or vesicoureteral reflux (VUR). Glomerular pathology that includes proteinuria and glomerulosclerosis has been reported. Some individuals progress to end-stage kidney disease (ESKD) depending on the severity of the kidney involvement.
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
EYA1 encodes EYA transcriptional coactivator and phosphatase 1 (592 aa). Functions both as protein phosphatase and as transcriptional coactivator for SIX1, and probably also for SIX2, SIX4 and SIX5. Highest expression in Pituitary (22.8 TPM) and Prostate (12.2 TPM).
Branchiootorenal syndrome 1 is associated with mutations in the EYA1 gene on chromosome 8.
The EYA1 protein participates in Expression of EYA1 in metanephric mesenchyme, EYA1, PAX2, and HOX11 paralog bind the GDNF gene, and EYA1, PAX2, and HOX11 paralog bind the SIX2 gene pathways.
EYA1 is classified as a druggable target (Enzyme category) with score 1.7.
Clinically actionable genotype-phenotype correlations for EYA1 and SIX1 are limited, as both genes exhibit high interfamilial variability and intrafamilial variability, sometimes even for the same pathogenic variant . However, the following correlations with the involved gene have been observed:
EYA1 pathogenic variants are associated with the specific "unwound cochlea" cochlear malformation or offset cochlear turns (measurable by turn angle ratio [TAR] on CT or MRI; TAR 0.476), which are seen in 100% of individuals with an EYA1 pathogenic variant and is considered diagnostic for EYA1-related BORSD .
SIX1 pathogenic variants are always associated with hearing loss, which can be sensorineural or mixed .
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
Based on clinical studies of large pedigrees, BORSD appears to have 100% penetrance; however, intrafamilial variability and interfamilial variability are high .
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
The clinical diagnostic criteria for branchiootorenal spectrum disorder (BORSD) outlined by remain clinically useful and supported by subsequent studies .
Branchiootorenal spectrum disorder (BORSD) should be suspected in probands with the following major and minor diagnostic criteria and family history.
Major diagnostic criteria
• Second branchial arch anomalies
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
At the time of this writing, Online Mendelian Inheritance in Man (OMIM) lists more than 700 entries for syndromic forms of hearing loss. Although branchiootorenal spectrum disorder (BORSD) has a distinctive phenotype that is readily appreciated when segregating in large families, the diagnosis can be difficult to establish in small families. Possible considerations in a differential diagnosis are shown in .
Table 2.
Genes of Interest in the Differential Diagnosis of Branchiootorenal Spectrum Disorder
Gene(s) | Disorder | MOI | Features of Disorder
Overlapping w/BORSD | Distinguishing from BORSD
CHD7 | CHD7 disorder (incl CHARGE syndrome) | AD | Hearing loss, external/middle/inner ear anomalies, kidney anomalies | Coloboma, choanal atresia, genital hypoplasia, developmental delay
COL4A3
COL4A4
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
Genetic testing for EYA1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for branchiootorenal syndrome 1 has been reported in the published literature.
No approved treatments are currently available for branchiootorenal syndrome 1. The disease remains an area of unmet medical need.
No consensus clinical practice guidelines for branchiootorenal spectrum disorder (BORSD) have been published. The following recommendations are based on the authors' personal experience managing individuals with BORSD.
To establish the extent of disease and needs in an individual diagnosed with BORSD, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
Branchiootorenal Spectrum Disorder: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Otoscopic exam to assess external auditory canal tympanic membrane | For anomalies such as atresia or stenosis
| Physical exam of neck for sinus tracts, cysts, /or fistulae | • Consider imaging study (CT or MRI) of neck if a mass is palpable under sternocleidomastoid muscle.
It may be helpful to obtain a fistulogram by using a contrast agent to visualize the path of the tract connecting the skin on the neck to the tonsillar fossa.
| Complete assessment of auditory acuity using ABR testing, OAE testing, pure-tone audiometry1 | If hearing impairment fluctuates or is progressive, perform temporal bone imaging using CT /or MRI of temporal bones to determine if vestibular aqueduct is enlarged.2
| • Kidney ultrasound exam to detect agenesis, hypoplasia, dysplasia
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
Hearing loss. Individuals with hearing loss should avoid environmental exposures known to cause hearing loss. Most important for persons with mild-to-moderate hearing loss is avoidance of repeated overexposure to loud noises, particularly secondary to earbud use. The headphone safety feature built into most smartphones can be set to a maximum limit of 75 decibels (dB). Headphone/earbud safety features can be found in the phone settings menu:
In iPhones, under Settings Sounds Haptics Headphone Safety
In Android phones, under Settings Sounds Vibrations Volume Media volume limit
Also see these general resources on noise reduction:
• 6 Simple Ways to Check If Your Headphones Are Too Loud
• How Do I Prevent Hearing Loss from Loud Noise?
Anecdotal reports that increased intracranial pressure in individuals with enlarged vestibular aqueduct (EVA) can occasionally trigger a decline in hearing has led some providers to recommend avoiding activities such as weightlifting and contact sports ; however, evidence is insufficient to support the claim that avoiding these activities will decrease the risk of overall hearing loss progression .
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
View trials for branchiootorenal syndrome 1
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations in are recommended.
Table 5.
Branchiootorenal Spectrum Disorder: Recommended Surveillance
System/Concern | Evaluation | Frequency
| Serial audiometry to survey for progression of hearing loss based on symptoms reported by affected person | At each visit
Exam by physician familiar w/BORSD | • Annually
More frequently if fluctuation or progression of hearing loss is described by affected person
| Eval of kidney function | Annually1
BORSD = branchiootorenal spectrum disorder
1. For individuals with CAKUT, it is recommended that kidney function be evaluated at least annually, especially if the CAKUT involves unilateral kidney dysplasia. Follow up as recommended by a pediatric nephologist is essential for detecting potential complications and for monitoring the long-term effects of kidney abnormalities.
Source: GeneReviews — "Branchiootorenal Spectrum Disorder"
Phenotype severity distribution: 6 common features.
No clinical trials have been registered for branchiootorenal syndrome 1.
129 publications have been identified in PubMed for branchiootorenal syndrome 1. Research spans Review / Meta-Analysis (29%), Basic Science / Preclinical (29%), and Epidemiology / Natural History (27%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 38 | 29% |
Laboratory research | 38 | 29% |
Disease patterns and progression | 35 | 27% |
Patient case studies | 8 | 6% |
Testing and diagnosis research | 6 | 5% |
Clinical study results | 3 | 2% |
New treatment approaches | 1 | 1% |
Zhang X (2026). [PMID: 41735671](https://pubmed.ncbi.nlm.nih.gov/41735671/). *Archives of osteoporosis*. [Diagnostic / Biomarker]
Ahad MA (2026). [PMID: 41175386](https://pubmed.ncbi.nlm.nih.gov/41175386/). *Current opinion in ophthalmology*. [Review / Meta-Analysis]
Dick HB (2026). [PMID: 41248686](https://pubmed.ncbi.nlm.nih.gov/41248686/). *Klinische Monatsblatter fur Augenheilkunde*. [Review / Meta-Analysis]
Zhang B (2026). [PMID: 41533902](https://pubmed.ncbi.nlm.nih.gov/41533902/). *Invest Ophthalmol Vis Sci*. [Basic Science / Preclinical]
Kubo E (2026). [PMID: 41577330](https://pubmed.ncbi.nlm.nih.gov/41577330/). *Progress in retinal and eye research*. [Review / Meta-Analysis]
Tirakunwichcha P (2026). [PMID: 41824392](https://pubmed.ncbi.nlm.nih.gov/41824392/). *Metabolic syndrome and related disorders*. [Review / Meta-Analysis]
Senjab A (2026). [PMID: 41917973](https://pubmed.ncbi.nlm.nih.gov/41917973/). *J Med Case Rep*. [Case Report / Case Series]
Geng Z (2026). [PMID: 40580389](https://pubmed.ncbi.nlm.nih.gov/40580389/). *Neuroscience bulletin*. [Basic Science / Preclinical]
Goto SI (2026). [PMID: 41842599](https://pubmed.ncbi.nlm.nih.gov/41842599/). *Acta Otolaryngol*. [Basic Science / Preclinical]
Wu T (2025). [PMID: 40860156](https://pubmed.ncbi.nlm.nih.gov/40860156/). *Theranostics*. [Basic Science / Preclinical]