Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
2q32q33 microdeletion syndrome is a recently described syndrome characterized by a variable phenotype involving moderate to severe intellectual deficit, significant speech delay, persistent feeding difficulties, growth retardation and dysmorphic features.
Features include always present findings: Bilateral tonic-clonic seizure, Low muscle tone (hypotonia), Anterior tibial bowing, and Restlessness and others. 55 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 8 | Bilateral tonic-clonic seizure, Seizure, Aggressive behavior |
Head and neck | 5 | Facial hypotonia, Microcephaly, Cleft palate |
Muscles | 2 | Low muscle tone (hypotonia), Facial hypotonia |
Skin | 2 | Thin skin, Nail dysplasia |
Growth and development | 1 | Short stature |
Lungs and breathing | 1 | Apnea |
Bones and joints | 1 | Generalized osteoporosis |
Age of onset: adulthood, childhood.
SATB2-associated syndrome (SAS) is a multisystem disorder characterized by significant neurodevelopmental compromise with limited or absent speech, behavioral issues, and craniofacial anomalies. To date, more than 500 individuals have been identified with a pathogenic variant in SATB2 [, , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. Table 2. SATB2-Associated Syndrome: Frequency of Select Features
Finding | % of Affected Persons1 | Comment |
|---|---|---|
Developmental delay/ intellectual disability | 100% | Most commonly in the moderate-to-profound range |
Speech delay | 100% | — |
SATB2 function has not been fully characterized.
Chromosome 2q32-q33 deletion syndrome is associated with mutations in the SATB2 gene on chromosome 2.
SATB2 pathogenic variants
More severe clinical phenotype. Using a clinical scoring rubric developed for SAS, individuals with the following types of SATB2 pathogenic variants have a more severe clinical phenotype [; Y Zarate, unpublished data] (see also satb2-portal.broadinstitute.org):
Null pathogenic variants located after amino acid 350 (the start of the CUT1 domain)
The recurrent missense pathogenic variant
The and pathogenic variants
Intragenic deletions
Milder clinical phenotype. Missense pathogenic variants located outside the CUT1 or CUT2 domains lead to milder clinical presentations.
Source: GeneReviews — "SATB2-Associated Syndrome"
No formal clinical diagnostic criteria have been established for SATB2-associated syndrome (SAS).
SAS should be suspected in individuals with the following clinical and family history findings.
Clinical findings
Typically moderate-to-profound developmental delay or intellectual disability, including severe speech delay and, in some, absence of speech; however, individuals with milder developmental delay affecting predominantly speech have been reported.
AND
Source: GeneReviews — "SATB2-Associated Syndrome"
In early infancy SATB2-associated syndrome (SAS) can be particularly difficult to diagnose when developmental delay, hypotonia, feeding difficulties, and palatal issues are the only observable features. During infancy and early childhood, many children with SAS are tested for Angelman syndrome and related disorders. Over time, the emergence of dental issues and distinctive behavioral issues along with lack of speech progression should lead clinicians to consider the diagnosis of SAS. Other syndromes that include developmental delay and dental abnormalities, such as KBG syndrome, can also be considered.
Table 3.
Disorders to Consider in the Differential Diagnosis of SATB2-Associated Syndrome
Source: GeneReviews — "SATB2-Associated Syndrome"
Genetic testing for SATB2 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for chromosome 2q32-q33 deletion syndrome. The disease remains an area of unmet medical need.
No consensus clinical practice guidelines for SATB2-associated syndrome (SAS) have been published. Some broad recommendations have been published , and dedicated neurologic and skeletal surveillance recommendations have been proposed based on two large cohort studies . In the absence of published consensus guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with SAS, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended.
Table 4.
SATB2-Associated Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Measurement of weight, length/height, growth velocity, head circumference | • To evaluate for poor growth
SAS-specific growth charts are available.1
| Neurologic eval | • Consider head MRI to evaluate for brain malformations if clinical seizures are present.2
Baseline EEG, preferably incl sleep stages to evaluate for ESES3
| Developmental assessment | • To incl motor, adaptive, cognitive, speech-language eval
Eval for early intervention/ special education
Neurobehavioral/
| Neuropsychiatric eval | For persons age 12 mos: screening for concerns incl sleep disturbances, ADHD, anxiety, /or findings suggestive of ASD
| Assess for palatal anomalies. | Referr...
Source: GeneReviews — "SATB2-Associated Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SATB2-Associated Syndrome"
View trials for chromosome 2q32-q33 deletion syndrome
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 6. SATB2-Associated Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
ENT/Mouth | Eval by dentist/orthodontist | At least annually Neurologic |
Eyes | Eval by ophthalmologist | Annually or as clinically indicated |
Respiratory | Assess for signs/symptoms of sleep disturbance. | At each visit |
Source: GeneReviews — "SATB2-Associated Syndrome"
Phenotype severity distribution: 27 always present features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
Data assembled from 6 of 12 sources · Last updated Sep 20, 2026, 8:43 AM UTC
Patient Advocacy Groups (PAGs) provide support, resources, and community for patients and caregivers.
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Craniofacial dysmorphism |
84% |
— |
Dental anomalies | 98% | — |
Behavioral issues | 55% | — |
Elevated alkaline phosphatase | 62% | — |
Cleft palate | 45% | — |
Abnormal neuroimaging | 68% | — |
Micrognathia | 42% | — |
Hypotonia | 59% | — |
Feeding difficulties | 68% | — |
Low weight | 22% | — |
Low bone density | 26% | — |
Clinical seizures | 20% | 1. Developmental delay (DD) and intellectual disability (ID). All known individuals with SAS have some degree of developmental delay, often with intellectual disability of variable severity (mild to profound).; Speech/language. |
Source: GeneReviews — "SATB2-Associated Syndrome"