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Citrin deficiency is a rare autosomal recessive urea cycle defect characterized clinically by recurring episodes of hyperammonemia and associated neuropsychiatric symptoms in the adult-onset form (citrullinemia type II), and by transient cholestasis and variable hepatic dysfunction in the neonatal form (neonatal intrahepatic cholestasis due to citrin deficiency).
No HPO annotations are available for this condition.
Citrin deficiency has three age-dependent, variable clinical phenotypes: neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD), failure to thrive and dyslipidemia caused by citrin deficiency (FTTDCD), and citrullinemia type II (CTLN2). Citrin deficiency can manifest in newborns or infants as NICCD characterized by a diverse set of metabolic abnormalities, including citrullinemia, galactosemia, hypoglycemia, and sometimes hyperammonemia that is likely secondary to liver dysfunction. In most individuals, the clinical manifestations of NICCD improve or resolve by age 12 months. However, some individuals remain symptomatic with progression to FTTDCD, which is characterized by poor weight gain, poor linear growth, dyslipidemia, recurrent hypoglycemia, and fatigue. These individuals may have a silent remission period until after adolescence; 10%-20% evolve into the very severe or even fatal metabolic condition CTLN2, characterized by hyperammonemia, severe liver steatosis, cognitive impairment with sudden episodes of unconsciousness due to brain edema, and pancreatitis. The proportion of people with NICCD that evolve into CTLN2 is unknown. Often, FTTDCD and CTLN2 are characterized by the individual's preference for protein-rich and/or lipid-rich foods and aversion to carbohydrate-rich foods. Neonatal Intrahepatic Cholestasis Caused by Citrin Deficiency (NICCD) Table 2. Neonatal Intrahepatic Cholestasis Caused by Citrin Deficiency: Frequency of Select Features
Citrin deficiency has three clinical phenotypes: neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD), failure to thrive and dyslipidemia caused by citrin deficiency (FTTDCD), and citrullinemia type II (CTLN2) . A symptomatic individual may have either untreated NICCD due to newborn screening (NBS) not performed, false negative NBS result, caregivers not adherent to recommended treatment following a positive NBS result, or manifestations associated with later-onset citrin deficiency (FTTDCD or CTLN2).
Suggestive Findings
No approved treatments are currently available for citrin deficiency. The disease remains an area of unmet medical need.
Although progress has been made [, , , ], no well-recognized clinical practice guidelines for citrin deficiency have been published. The following recommendations are based on the authors' personal experience managing large cohorts of individuals with this disorder over a long period of time.
To establish the extent of disease and needs in an individual diagnosed with citrin deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 7. Citrin Deficiency: Recommended Surveillance
2 clinical trials registered. Interventions under study include other interventions. Pipeline includes 1 NA. Research is primarily sponsored by academic and government institutions.
46 publications have been identified in PubMed for citrin deficiency. Research spans Review / Meta-Analysis (30%), Epidemiology / Natural History (22%), and Diagnostic / Biomarker (15%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 14 | 30% |
Data assembled from 5 of 12 sources · Last updated Sep 19, 2026, 6:42 AM UTC
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about citrin deficiency
Clinical Feature/ Laboratory Analyte | Proportion of Persons w/Feature1 | Comment |
|---|---|---|
Liver disease | Cholestasis | 79% |
liver transaminases | 71% | — |
Hypoproteinemia | 39% | — |
Prolonged prothrombin time | 34% | — |
Fatty liver | 33% | Liver histology includes cholestasis, diffuse macrovesicular microvesicular steatosis, inflammatory infiltration, fibrosis |
Hyperlipidemia | 24% | — |
Hepatomegaly | 22% | — |
Hyperammonemia | 11% | Ammonia 100 umol/L |
Growth impairment (poor weight gain) | 32% | Usually small for gestational age; growth failure until age 6-9 mos |
Hypoglycemia | 30% | — |
Amino acid profile | citrulline (~80%) | Also elevated threonine, methionine, arginine, tyrosine |
Anemia | 17% | — |
Seizures | 5% | 1. Liver dysfunction. Children younger than age one year with NICCD have intrahepatic cholestasis. |
Source: GeneReviews — "Citrin Deficiency"
Abnormal NBS result. NBS for citrin deficiency is primarily based on quantification of the analyte citrulline on dried blood spots. Note: Dried blood spots also show elevated galactose, ...
Source: GeneReviews — "Citrin Deficiency"
Increased plasma concentration of citrulline is also present in citrullinemia type 1, argininosuccinate lyase deficiency, pyruvate carboxylase deficiency, and lysinuric protein intolerance . Hyperammonemia also occurs in urea cycle disorders, which result from defects in the metabolism of the nitrogen produced by the breakdown of protein and other nitrogen-containing molecules (see Urea Cycle Disorders Overview). Severe deficiency or total absence of activity of any of the first four enzymes in the pathway (CPSI, OTC, ASS1, ASL) or the cofactor producer (NAGS) results in the accumulation of ammonia and other precursor metabolites during the first few days of life in most affected individuals.
Source: GeneReviews — "Citrin Deficiency"
Biomarker and diagnostic research for citrin deficiency has been reported in the published literature.
Table 5.
Citrin Deficiency: Recommended Evaluations Following Initial Diagnosis by Phenotype
Evaluation | Phenotype
NICCD | FTTDCD | CTLN2
Consultation w/metabolic physician/ biochemical geneticist specialist metabolic dietitian1 | • Transfer to specialist center w/experience in mgmt of inherited metabolic diseases (strongly recommended).
Plasma amino acid analysis to measure citrulline other amino acids
Consider short hospitalization at a center of expertise for inherited metabolic conditions to provide caregivers w/detailed education (natural history, maintenance emergency treatment, prognosis).
| Referral to specialist center w/experience in mgmt of inherited metabolic diseases; includes plasma amino acid analysis
| Perform detailed anthropometric exam eval using age- sex-matched growth standards. | Assess weight.
Investigate feeding pattern. | Investigate carbohydrate, protein, lipid composition of diet.
Source: GeneReviews — "Citrin Deficiency"
Low-protein/high-caloric (high-carbohydrate) diet. Although a low-protein/high-caloric diet helps prevent hyperammonemia in urea cycle enzyme deficiencies, it is harmful for individuals with all forms of citrin deficiency (i.e., neonatal intrahepatic cholestasis caused by citrin deficiency [NICCD)], failure to thrive and dyslipidemia caused by citrin deficiency [FTTDCD], or citrullinemia type II [CTLN2]) [, , , ]. A high-carbohydrate diet may increase nicotinamide adenine dinucleotide hydrogen (NADH) production, disturb urea synthesis, and stimulate the citrate-malate shuttle, resulting in hyperammonemia, fatty liver, and hypertriglyceridemia [, , , ]. Infusion of sugars including glycerol, fructose, and glucose. Severe brain edema treated with glycerol-containing osmotic agents has resulted in continued deterioration and is contraindicated in those with CTLN2 . Degradation of large amounts of glycerol and fructose generates NADH in liver cytosol, which may disturb liver function . Infusion of high-concentration glucose may also exacerbate hyperammonemia . Mannitol infusion appears to be safer . Alcohol. Drinking alcohol can trigger the onset of CTLN2 because alcohol dehydrogenase generates NADH in the cytosol of the liver.
Source: GeneReviews — "Citrin Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Citrin Deficiency"
2 trials found
Evaluation |
|---|
Frequency/Comment |
|---|
Metabolic balance/ Nutrition | Eval by an experienced metabolic physician metabolic nutritionist; may include assessments of biochemical /or metabolome analytes (incl plasma amino acids) w/adjustments in medication dietary therapies based on age, weight, diet | As recommended by metabolic center Education of parents caregivers such that diligent observation mgmt can be administered expediently in setting of intercurrent illness or other catabolic stressors |
Growth | Assess height, weight, head circumference. | At each visit throughout childhood adolescence; continue weight assessment at each visit throughout adulthood |
Liver function | ALT, AST, albumin, -GTP, ALP, bilirubin, bile acids, cholesterol, triglyceride, AFP, coagulation, ammonia to assess liver function | As clinically indicated Pancreatic function |
Development/Behavior | Monitor developmental milestones. | At each visit throughout childhood adolescence; Neuropsychological testing using age-appropriate standardized assessment batteries; Standardized quality-of-life assessment tools for affected persons parents/caregivers |
Anemia | Complete blood count, ferritin level | As clinically indicated AFP = alpha-fetoprotein; ALP = alkaline phosphatase; ALT = alanine transaminase; AST = aspartate transaminase; PSTI = pancreatic secretory trypsin inhibitor; US = ultrasound; -GTP = gamma-glutamyl transpeptidase 1. |
Source: GeneReviews — "Citrin Deficiency"
Estimated prevalence: Unknown (Unknown prevalence).
Disease patterns and progression |
10 |
22% |
Testing and diagnosis research | 7 | 15% |
Patient case studies | 7 | 15% |
Laboratory research | 5 | 11% |
Other research | 2 | 4% |
Clinical study results | 1 | 2% |
Wu Y (2026). [PMID: 42010993](https://pubmed.ncbi.nlm.nih.gov/42010993/). *Immun Inflamm Dis*. [Review / Meta-Analysis]
Palmer CS (2026). [PMID: 41870299](https://pubmed.ncbi.nlm.nih.gov/41870299/). *Protein Sci*. [Review / Meta-Analysis]
Chen L (2026). [PMID: 42106161](https://pubmed.ncbi.nlm.nih.gov/42106161/). *J Pediatr (Rio J)*. [Epidemiology / Natural History]
Gao F (2026). [PMID: 42051946](https://pubmed.ncbi.nlm.nih.gov/42051946/). *Front Pediatr*. [Epidemiology / Natural History]
Asami Y (2026). [PMID: 42107343](https://pubmed.ncbi.nlm.nih.gov/42107343/). *Mol Genet Metab*. [Case Report / Case Series]
Kido J (2026). [PMID: 41923674](https://pubmed.ncbi.nlm.nih.gov/41923674/). *Mol Genet Metab*. [Diagnostic / Biomarker]
Urquiza N (2026). [PMID: 41475179](https://pubmed.ncbi.nlm.nih.gov/41475179/). *Mol Genet Metab*. [Case Report / Case Series]
Division Of Biochemistry And Metabolism Medical Genetics Branch Chinese Medical Association (2026). [PMID: 41663297](https://pubmed.ncbi.nlm.nih.gov/41663297/). *Zhonghua Yi Xue Yi Chuan Xue Za Zhi*. [Review / Meta-Analysis]
Walker JE (2025). [PMID: 39581577](https://pubmed.ncbi.nlm.nih.gov/39581577/). *J Inherit Metab Dis*. [Review / Meta-Analysis]
Kido J (2025). [PMID: 40309478](https://pubmed.ncbi.nlm.nih.gov/40309478/). *Hum Mutat*. [Review / Meta-Analysis]
AI-curated news mentioning citrin deficiency
Updated May 5, 2026
A recent study highlights the role of patient experience in shaping research and outcomes for citrin deficiency. This case study emphasizes the importance of integrating patient insights into the development of effective treatments.