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Citrullinemia type I is a rare autosomal recessive urea cycle defect characterized biologically by hyperammonemia and clinically by progressive lethargy, poor feeding and vomiting in the neonatal form (Acute neonatal citrullinemia type I) and by variable hyperammonemia in the later-onset form (adult-onset citrullinemia type I).
Features include always present findings: Reduced tissue argininosuccinate synthetase activity, Elevated plasma citrulline, Hyperglutaminemia, and Oroticaciduria; and sometimes findings: Stroke. 22 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 7 | Stroke, Seizure, Ataxia |
Digestive system | 3 | Liver scarring (cirrhosis) (cirrhosis), Enlarged liver (hepatomegaly), Vomiting |
Heart and blood vessels | 1 | Stroke |
Growth and development | 1 | Failure to thrive |
Lungs and breathing | 1 | Respiratory alkalosis |
Citrullinemia type I (CTLN1) presents as a spectrum that includes a neonatal acute form (the "classic" form), a milder late-onset form (the "non-classic" form), a form in which women have onset of symptoms at pregnancy or post partum, and a form without symptoms or hyperammonemia. It has been proposed that measurement of residual enzyme activity can be used to classify individuals as "predicted severe" (≤8% activity) and "predicted attenuated" (8% activity) . Using this model, individuals with cytosolic urea cycle disorders (inclusive of CTLN1 and argininosuccinic aciduria [ASA]) were overrepresented in a group diagnosed via newborn screening (NBS), while those with a predicted severe phenotype were initially diagnosed after onset of symptoms.
Source: GeneReviews — "Citrullinemia Type I"
ASS1 encodes argininosuccinate synthase 1 (412 aa). One of the enzymes of the urea cycle, the metabolic pathway transforming neurotoxic amonia produced by protein catabolism into inocuous urea in the liver of ureotelic animals. Highest expression in Liver (595.5 TPM) and Kidney Cortex (273.8 TPM).
Citrullinemia type I is caused by mutations in the ASS1 gene on chromosome 9.
ASS1 is classified as a druggable target (Drug Resistance and Enzyme categories) with score 1.9.
While certain ASS1 pathogenic variants are identified with particular phenotypes, the phenotype cannot be predicted in all instances .
Severe, classic (neonatal-onset) CTLN1 typically results from 22 defined pathogenic variants . The pathogenic variant in exon 15, p.Gly390Arg, remains the most prevalent associated with the classic phenotype. Other variants in this category include p.Gly14Ser, p.Arg157His, p.Glu191Lys, p.Gly324Ser, and p.Arg363Trp .
Mild (i.e., late-onset) CTLN1 is associated with 12 pathogenic variants, including , p.Tyr190Asp, p.Ala202Glu, , and p.Val269Met .
Source: GeneReviews — "Citrullinemia Type I"
Citrullinemia type I (CTLN1) results from deficiency of the enzyme argininosuccinate synthase, the third step in the urea cycle, in which citrulline is condensed with aspartate to form arginosuccinic acid (see Urea Cycle Disorders Overview Figure 1).
Suggestive Findings
NBS for CTLN1 is primarily based on quantification of the analyte citrulline on dried blood spots. Citrulline values above the cutoff reported by the screening laboratory are considered positive and require follow-up biochemical testing, which usually demonstrates the following:
Source: GeneReviews — "Citrullinemia Type I"
Neonatal ("Classic") Presentation Elevated citrulline on newborn screening (NBS). Conditions that may result in elevated citrulline on NBS are citrullinemia type II (citrin deficiency), argininosuccinate lyase deficiency (argininosuccinic aciduria), and pyruvate carboxylase deficiency. Hyperammonemia. It is critical to distinguish hyperammonemia caused by a defect in the urea cycle from the secondary hyperammonemia caused by an organic acidemia, which may cause inhibition of N-acetylglutamate synthase (see Urea Cycle Disorders Overview Figure 2). Urea Cycle Disorders Overview Figure 3 shows a diagnostic strategy to identify which steps in the urea cycle are defective in an individual with hyperammonemia. Classic citrullinemia type I (a defect in step 3 of the urea cycle) shares the phenotype of the typical acute neonatal hyperammonemia displayed by other defects in the first four steps in the urea cycle pathway: carbamoylphosphate synthetase I deficiency (step 1), ornithine transcarbamylase deficiency (step 2), and argininosuccinate lyase deficiency (step 4). Table 2. Selected Disorders in the Differential Diagnosis of Acute Neonatal ("Classic") Citrullinemia Type I
Gene | Disorder | MOI |
|---|
Genetic testing for ASS1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for citrullinemia type I has been reported in the published literature.
No approved treatments are currently available for citrullinemia type I. The disease remains an area of unmet medical need.
Clinical practice guidelines for citrullinemia type I (CTLN1) have been published. See , , , , (full text). When CTLN1 is suspected during the diagnostic evaluation due to elevated citrulline on newborn screening, metabolic treatment should be initiated immediately. Development and evaluation of treatment plans, training and education of affected individuals and their families, and avoidance of side effects of dietary treatment (i.e., malnutrition, growth failure) require a multidisciplinary approach including multiple subspecialists, with oversight and expertise from a specialized metabolic center.
To establish the extent of disease and needs in an individual diagnosed with CTLN1, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
Recommended Evaluations Following Initial Diagnosis of Citrullinemia Type I
Evaluation | Comment
Consultation w/metabolic physician/ biochemical geneticist specialist metabolic dietitian1 | • Transfer to specialist center w/experience in mgmt of inherited metabolic diseases (strongly recommended).
Consider short hospitalization at center of expertise for inherited metabolic conditions to provide caregivers w/detailed education (natural history, maintenance emergency treatment, prognosis, risks for acute encephalopathic crises).
Metabolic control | Consider measurement of following, based on clinical status, to aid in nutritional mgmt:
Source: GeneReviews — "Citrullinemia Type I"
Avoid the following:
Excess protein intake
Prolonged fasting
Obvious exposure to communicable diseases
Source: GeneReviews — "Citrullinemia Type I"
Gene therapy has been suggested; success has not been achieved to date. Phase I and Phase II clinical trials to assess the safety and efficacy of human hepatocyte transplantation as either an alternative to liver transplantation or a temporizing measure for individuals with CTLN1 awaiting transplantation have completed. Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Citrullinemia Type I"
3 trials found
Follow up in a metabolic clinic with a qualified metabolic nutritionist and clinical biochemical geneticist is required .
Table 9.
Recommended Surveillance for Individuals with Citrullinemia Type I
Manifestation/Concern | Evaluation | Frequency
| • Measurement of growth parameters
Eval of nutritional status safety of oral intake
| At each visit
Early warning signs
of impending
hyperammonemic
episodes | Monitor for mood changes, headache, lethargy, nausea, vomiting, refusal to eat, hyperreflexia, ankle clonus.1
| Dietary assessment (whether by diary or recall) to review adequate/complete nutrition is being received
Nutritional status
monitoring | Carnitine levels to monitor for secondary carnitine deficiency in patients on sodium benzoate
Plasma amino acids analysis to identify deficiency of EAA, monitor arginine, citrulline, EAA supplementation | • During 1st yr of life: at least every 3 mos
In teen/adult yrs: every 6-12 mos, depending on clinical stability
| Monitor developmental progress educational needs. | At each visit
| Physical medicine, OT/PT assessment of mobility, self-help skills
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning).
EEA = essential amino acids; OT = occupational therapy; PT = physical therapy
Source: GeneReviews — "Citrullinemia Type I"
Phenotype severity distribution: 4 always present features.
Estimated prevalence: 1-9 in 100,000 (Uncommon).
3 clinical trials registered, 1 recruiting. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
57 publications have been identified in PubMed for citrullinemia type I. Research spans Review / Meta-Analysis (25%), Case Report / Case Series (21%), and Epidemiology / Natural History (19%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 14 | 25% |
Patient case studies | 12 | 21% |
Disease patterns and progression | 11 | 19% |
Testing and diagnosis research | 8 | 14% |
Laboratory research | 6 | 11% |
New treatment approaches | 4 | 7% |
Other research | 1 | 2% |
Clinical study results | 1 | 2% |
Kido J (2026). [PMID: 41923674](https://pubmed.ncbi.nlm.nih.gov/41923674/). *Mol Genet Metab*. [Diagnostic / Biomarker]
İşler-Soylu E (2026). [PMID: 42190069](https://pubmed.ncbi.nlm.nih.gov/42190069/). *J Pediatr Endocrinol Metab*. [Epidemiology / Natural History]
Zayed A (2026). [PMID: 41988439](https://pubmed.ncbi.nlm.nih.gov/41988439/). *Oxf Med Case Reports*. [Case Report / Case Series]
Division Of Biochemistry And Metabolism Medical Genetics Branch Chinese Medical Association X (2026). [PMID: 41663297](https://pubmed.ncbi.nlm.nih.gov/41663297/). *Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics*. [Review / Meta-Analysis]
Takeda K (2026). [PMID: 42250459](https://pubmed.ncbi.nlm.nih.gov/42250459/). *Bioelectrochemistry*. [Basic Science / Preclinical]
Boeri S (2026). [PMID: 41761260](https://pubmed.ncbi.nlm.nih.gov/41761260/). *Italian journal of pediatrics*. [Gene Therapy / Novel Therapeutics]
Cen Z (2026). [PMID: 40683404](https://pubmed.ncbi.nlm.nih.gov/40683404/). *Clinica chimica acta; international journal of clinical chemistry*. [Epidemiology / Natural History]
Eldredge JA (2026). [PMID: 42235881](https://pubmed.ncbi.nlm.nih.gov/42235881/). *J Pediatr*. [Case Report / Case Series]
Truong TH (2026). [PMID: 41809964](https://pubmed.ncbi.nlm.nih.gov/41809964/). *European journal of case reports in internal medicine*. [Case Report / Case Series]
Tálas A (2026). [PMID: 42127219](https://pubmed.ncbi.nlm.nih.gov/42127219/). *Sci Transl Med*. [Basic Science / Preclinical]
Data assembled from 9 of 12 sources · Last updated Sep 18, 2026, 6:15 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about citrullinemia type I
Argininosuccinate lyase (ASL) deficiency | AR | citrulline on NBS. Severe neonatal-onset ASL deficiency is assoc w/hyperammonemia w/in 1st few days after birth that can manifest as lethargy, somnolence, refusal to feed, vomiting, tachypnea, respiratory alkalosis. | — |
CPS1 | Carbamoyl phosphate synthase (CPS1) deficiency (See Urea Cycle Disorders Overview.) | AR | Most severe of urea cycle disorders. Persons w/complete CPS1 deficiency rapidly develop hyperammonemia in newborn period. DLD |
Dihydrolipoamide dehydrogenase (DLD) deficiency | AR | citrulline on NBS. ammonia glutamine.1 Early-onset DLD deficiency typically manifests in infancy as hypotonia w/lactic acidosis. Affected infants frequently do not survive their initial metabolic decompensation, or die w/in 1st few yrs of life during a recurrent metabolic decompensation. OTC | — |
Ornithine transcarbamylase (OTC) deficiency | XL | Males w/severe neonatal-onset OTC deficiency are asymptomatic at birth but become symptomatic from hyperammonemia in 1st week of life, most often on day 2 to 3 of life, are usually catastrophically ill when they come to medical attention. PC | — |
Pyruvate carboxylase deficiency | AR | citrulline on NBS. Type A (infantile form): most affected children die in infancy or early childhood. | — |
Source: GeneReviews — "Citrullinemia Type I"