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An idiopathic generalized epilepsy characterized by onset of multiple seizure types in the first few years of life and associated with poor prognosis. Affected individuals have cognitive regression and intellectual disability and that has material basis in heterozygous mutation in the SLC6A1 gene on chromosome 3p25.
Features include always present findings: Generalized myoclonic-atonic seizure and Intellectual disability; and very common findings: Generalized non-motor (absence) seizure and Global developmental delay. 14 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 10 | Eyelid myoclonus, Generalized non-motor (absence) seizure, Atonic seizure |
Bones and joints | 1 | Sideways curvature of the spine (scoliosis) |
Muscles | 1 | Low muscle tone (hypotonia) |
SLC6A1-related neurodevelopmental disorder (SLC6A1-NDD) is characterized by developmental delay, epilepsy, autism spectrum disorder, and attention-deficit/hyperactivity disorder. Many individuals also have hypotonia, intermittent tremor or ataxia, and sleep disturbances . To date, more than 100 individuals have been identified with a pathogenic variant in SLC6A1 . The following description of the phenotypic features associated with this condition is based on these reports. Table 2. Select Features of SLC6A1-Related Neurodevelopmental Disorder
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Developmental delay | 90% | Mild to severe |
Hypotonia | 60% | Low muscle tone in infancy is common improves w/age. |
Intellectual disability | 35% | Mild to severe |
Seizures | 85% | Absence atypical absence, myoclonic, atonic seizures are most prevalent. Some persons have intractable epilepsy. |
Movement disorders | 40% | Intermittent tremor w/fine motor tasks ataxia are most common. |
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
SLC6A1 function has not been fully characterized.
Epilepsy with myoclonic atonic seizures is associated with mutations in the SLC6A1 gene on chromosome 3.
Penetrance appears to be incomplete .
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
SLC6A1-related neurodevelopmental disorder (SLC6A1-NDD) should be considered in individuals with the following clinical findings.
Clinical findings
Mild-to-severe developmental delay (DD) and/or intellectual disability (ID)
Generalized hypotonia of infancy
Epilepsy including absence or atypical absence seizures, epilepsy with myoclonic-atonic seizures, generalized tonic-clonic seizures
Movement disorders such as tremor, stereotypies, and ataxia
Autism spectrum disorder, attention-deficit/hyperactivity disorder, aggression, anxiety, and/or sleep disturbances
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
The phenotypic features associated with SLC6A1-related neurodevelopmental disorder (SLC6A1-NDD) are not sufficiently specific to diagnose this condition clinically; all disorders with intellectual disability and/or seizures without other distinctive findings should be considered in the differential diagnosis. See OMIM Phenotypic Series: • Autosomal Dominant Intellectual Developmental Disorder • Autosomal Recessive Intellectual Developmental Disorder • Nonsyndromic X-Linked Intellectual Developmental Disorder • Syndromic X-Linked Intellectual Developmental Disorder • Developmental and Epileptic Encephalopathy SLC6A1-NDD shares phenotypic similarities, including developmental delay, epilepsy, and autism spectrum disorder, with the disorders listed in . In particular, Rett syndrome may be considered in individuals with developmental regression, and Angelman syndrome may be considered in those with intermittent rhythmic delta activity on their EEG. Finally, sodium channelopathies (SCN1A, SCN2A, SCN8A) and GABAA receptor-related epilepsies (GABRA1, GABRB2, GABRB3, GABRG2) also have a broad phenotypic spectrum that includes epilepsy, developmental delay, and autism spectrum disorder. Table 3. Selected Genes of Interest in the Differential Diagnosis of SLC6A1-Related Neurodevelopmental Disorder
Gene(s) | Disorder | MOI |
|---|
Genetic testing for SLC6A1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for epilepsy with myoclonic atonic seizures has been reported in the published literature.
No approved treatments are currently available for epilepsy with myoclonic atonic seizures. An additional 1 compound holds orphan drug designation.
While no drugs are FDA-approved specifically for epilepsy with myoclonic atonic seizures, some of the following designated compounds may be used off-label in clinical practice. Treatment decisions should be made in consultation with a specialist familiar with this condition.
The following drugs have received orphan drug designation from the FDA for epilepsy with myoclonic atonic seizures. Orphan designation reflects regulatory interest and does not indicate approval for treatment.
Brand Name | Generic Name | Sponsor | Designated | Exclusivity End | Designation Status |
|---|---|---|---|---|---|
cannabidiol oral solution (CBD-OS) | cannabidiol oral solution (CBD-OS) | Jazz Pharmaceuticals Research UK Limited | 2021 | — | Designated |
No clinical practice guidelines for SLC6A1-related neurodevelopmental disorder (SLC6A1-NDD) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SLC6A1-NDD, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with SLC6A1-Related Neurodevelopmental Disorder
System/Concern | Evaluation | Comment |
|---|---|---|
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Neurologic | Neurologic eval |
Given the high prevalence of challenging behaviors in individuals with SLC6A1-NDD, levetiracetam should be used with caution. Individuals with SLC6A1-NDD have intolerable behavioral side effects with levetiracetam at higher rates than reported in the general population.
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
There are therapies for SLC6A1-NDD in development. To date, one clinical trial is assessing the safety and efficacy of 4-phenylbutyrate in individuals with SLC6A1-NDD (NCT04937062). Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
View trials for epilepsy with myoclonic atonic seizures
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations in are recommended.
Table 6.
Recommended Surveillance for Individuals with SLC6A1-Related Neurodevelopmental Disorder
System/Concern | Evaluation | Frequency
| • Monitor developmental progress educational needs.
Physical medicine OT/PT assessment of mobility self-help skills
| At each visit
| • Monitor those w/seizures as clinically indicated.
Assess for new manifestations such as seizures, changes in tone, movement disorders.
Psychiatric/
| Behavioral assessment for findings suggestive of ASD, ADHD, aggression, self-injury, anxiety, /or sleep disturbances
| Monitor for constipation or diarrhea.
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning).
ADHD = attention-deficit/hyperactivity disorder; ASD = autism spectrum disorder; OT = occupational therapy; PT = physical therapy
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
Phenotype severity distribution: 2 always present features, 2 very common features, 3 common features.
Estimated prevalence: Unknown (Unknown prevalence).
No clinical trials have been registered for epilepsy with myoclonic atonic seizures.
44 publications have been identified in PubMed for epilepsy with myoclonic atonic seizures. Research spans Review / Meta-Analysis (29%), Epidemiology / Natural History (26%), and Case Report / Case Series (18%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 11 | 29% |
Disease patterns and progression | 10 | 26% |
Patient case studies | 7 | 18% |
Laboratory research | 6 | 16% |
Testing and diagnosis research | 3 | 8% |
New treatment approaches | 1 | 3% |
Samanta D (2026). [PMID: 42173049](https://pubmed.ncbi.nlm.nih.gov/42173049/). *Pediatr Neurol*. [Review / Meta-Analysis]
Fusco L (2026). [PMID: 41576840](https://pubmed.ncbi.nlm.nih.gov/41576840/). *Epilepsy & behavior : E&B*. [Review / Meta-Analysis]
Ahmadi S (2026). [PMID: 41716732](https://pubmed.ncbi.nlm.nih.gov/41716732/). *Annals of the Child Neurology Society*. [Review / Meta-Analysis]
Pellacani S (2026). [PMID: 41523187](https://pubmed.ncbi.nlm.nih.gov/41523187/). *Brain communications*. [Epidemiology / Natural History]
Matsuura R (2026). [PMID: 42019159](https://pubmed.ncbi.nlm.nih.gov/42019159/). *Brain Dev*. [Case Report / Case Series]
Lu Z (2026). [PMID: 41494423](https://pubmed.ncbi.nlm.nih.gov/41494423/). *Ultrasonics*. [Diagnostic / Biomarker]
Wang Y (2026). [PMID: 42037703](https://pubmed.ncbi.nlm.nih.gov/42037703/). *Front Neurol*. [Epidemiology / Natural History]
Pozeg P (2026). [PMID: 42119452](https://pubmed.ncbi.nlm.nih.gov/42119452/). *Epilepsy Res*. [Basic Science / Preclinical]
de Oliveira HM (2026). [PMID: 42185726](https://pubmed.ncbi.nlm.nih.gov/42185726/). *CNS Drugs*. [Review / Meta-Analysis]
Figueroa AG (2026). [PMID: 41831475](https://pubmed.ncbi.nlm.nih.gov/41831475/). *The Lancet. Neurology*. [Review / Meta-Analysis]
Data assembled from 8 of 12 sources · Last updated Sep 20, 2026, 5:51 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
30% |
Rigidity, repetitive speech patterns behaviors, sensory sensitivity, sensory-seeking behaviors are most common. |
ADHD | 15% | Hyperactive, inattentive, or combined type Developmental delay (DD) is the most prevalent clinical feature, but it can vary from mild to severe among affected individuals. |
Clinical Characteristics
Comment |
|---|
GABRG2 | GABAA receptor-related epilepsies (OMIM 137160, 600232, 137192, 137164) | AD | Generalized epilepsy w/or w/o NDD. Some individuals have ASD, behavioral issues, or movement disorders. EEGs can have variable findings ranging from normal to abnormal w/focal or generalized spike-wave discharges, hypsarrhythmia, or burst-suppression pattern. Fever-related seizures are common. | Persons w/SLC6A1-NDD are unlikely to have hypsarrhythmia or burst-suppression pattern on EEG may be more likely to have NDD. |
MECP2 | Rett syndrome (See MECP2 Disorders.) | XL | Progressive NDD primarily affecting females characterized by apparently normal psychomotor development in 1st 6-18 mos of life, followed by short period of developmental stagnation, then rapid regression in language motor skills, followed by long-term stability. | Persons w/Rett syndrome typically have more severe DD/ID than those w/SLC6A1-NDD. SCN1A SCN2A |
SCN8A | Sodium channelopathies (See, e.g., SCN1A Seizure Disorders and SCN8A-Related Epilepsy w/Encephalopathy.) | AD | Epilepsy, ASD, DD. Seizures are often exacerbated by heat persons are prone to status epilepticus. May have encephalopathic features on EEG consistent w/DEE or LGS. Seizure onset is typically w/in 1st yr of life, there is risk of SUDEP. | — |
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"
Movement disorder/ Ataxia | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) Psychiatric/ |
Behavioral | Neuropsychiatric eval | For persons age 12 mos: screening for behavior concerns incl findings suggestive of ASD, ADHD, aggression, anxiety, /or sleep disturbances Gastrointestinal/ |
Feeding | Gastroenterology/ nutrition/ feeding team eval | To incl eval of nutritional status; Assess for chronic constipation or diarrhea. |
Hearing | Audiologic eval | Assess for hearing impairment in those w/language delay.1 |
Genetic counseling | By genetics professionals2 | To inform affected persons their families re nature, MOI, implications of SLC6A1-NDD to facilitate medical personal decision making; For an online portal to aid in variant eval, click here. Family support resources |
Treatment of Manifestations in Individuals with SLC6A1-Related Neurodevelopmental Disorder Manifestation/Concern | Treatment | Considerations/Other |
Developmental delay/ Intellectual disability | See . | Epilepsy |
Bowel dysfunction | Standard treatments for constipation diarrhea | Family/Community |
Source: GeneReviews — "SLC6A1-Related Neurodevelopmental Disorder"