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Ethylmalonic acid encephalopathy (EE) is defined by elevated excretion of ethylmalonic acid (EMA) with recurrent petechiae, orthostatic acrocyanosis and chronic diarrhea associated with neurodevelopmental delay, psychomotor regression and hypotonia with brain magnetic resonance imaging (MRI) abnormalities.
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 12:48 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Features include always present findings: Global developmental delay, Elevated circulating butyrylcarnitine concentration, and Cytochrome C oxidase-negative muscle fibers; and very common findings: Encephalopathy, Low muscle tone (hypotonia), and Ethylmalonic aciduria. 28 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 9 | Encephalopathy, Loss of previously acquired skills (developmental regression), Babinski sign |
Digestive system | 3 | Feeding difficulties, Chronic diarrhea, Diarrhea |
Muscles | 3 | Low muscle tone (hypotonia), Cytochrome C oxidase-negative muscle fibers, Generalized hypotonia |
Lab test results | 2 | Elevated circulating butyrylcarnitine concentration, Elevated circulating thiosulfate concentration |
Eyes | 2 | Abnormal retinal vascular morphology, Retinal vascular tortuosity |
Growth and development | 1 | Failure to thrive |
Ethylmalonic encephalopathy (EE) is a severe, early-onset, progressive disorder, typically characterized by the following major manifestations: developmental delay, progressive neurologic involvement, seizures, and vascular damage. Findings usually appear in the first years of life, in some instances during metabolic stress such as infection or fever. Affected infants typically have severe neck, trunk, and limb hypotonia and loss of head control, sometimes associated with frequent vomiting and loss of social interaction. In addition, chronic diarrhea and failure to thrive are common. Atypical findings have also been reported [, , , ]. Developmental delay, evident in early infancy, manifests later as intellectual disability that ranges from mild to severe.
Source: GeneReviews — "Ethylmalonic Encephalopathy"
ETHE1 encodes ETHE1 persulfide dioxygenase (254 aa). Sulfur dioxygenase that plays an essential role in hydrogen sulfide catabolism in the mitochondrial matrix. Highest expression in Colon Transverse (119.6 TPM) and Esophagus Mucosa (63.1 TPM).
Ethylmalonic encephalopathy is associated with mutations in the ETHE1 gene on chromosome 19.
The ETHE1 protein participates in Persulfide sulfur is dioxygenated and SQR oxidizes sulfide to bound persulfide pathways.
ETHE1 is classified as a druggable target (Enzyme and Transcription Factor categories) with score 0.0.
No genotype-phenotype correlations are known to be associated with ETHE1 biallelic pathogenic variants.
Source: GeneReviews — "Ethylmalonic Encephalopathy"
Ethylmalonic encephalopathy (EE) should be suspected in an individual with the following clinical findings, preliminary laboratory findings, and brain MRI findings .
Clinical findings
Global neurologic impairment
Early-onset progressive psychomotor regression
Seizures
Dystonia
Diffuse microvasculature injury
Petechiae and/or purpura
Orthostatic acrocyanosis
Hemorrhagic suffusions of mucosal surfaces
Chronic hemorrhagic diarrhea
Preliminary laboratory findings
Source: GeneReviews — "Ethylmalonic Encephalopathy"
Ethylmalonic acid is a dicarboxylic organic acid produced by the carboxylation of butyrate. Ethylmalonic encephalopathy (EE) should be included in the differential diagnosis of other forms of persistent ethylmalonic aciduria, including the following:
Defects of beta-oxidation of fatty acids with similar clinical findings (e.g., vomiting, diarrhea, difficulty with feeding, and developmental delay) such as short-chain acyl-CoA dehydrogenase (SCAD) deficiency and 3-hydroxyacyl-CoA dehydrogenase (HADH) deficiency (OMIM 231530). Petechiae, purpura, and orthostatic acrocyanosis are specific to EE .
Defects of the mitochondrial electron-transfer flavoprotein pathway or glutaric aciduria type II
Some forms of respiratory chain deficiency
Source: GeneReviews — "Ethylmalonic Encephalopathy"
Genetic testing for ETHE1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for ethylmalonic encephalopathy has been reported in the published literature.
No approved treatments are currently available for ethylmalonic encephalopathy. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with ethylmalonic encephalopathy (EE), the recommended evaluations following diagnosis (if not performed as part of the evaluation that led to the diagnosis) are as summarized in . Table 2. Recommended Evaluations Following Initial Diagnosis of Ethylmalonic Encephalopathy (EE)
System/Concern | Evaluation | Comment |
|---|---|---|
Neurologic | Neurologic eval | Particularly if medications are being used to treat spasticity /or extrapyramidal movement disorders (e.g., dystonia) Brain MRI |
Gastrointestinal | Feeding eval nutrition assessment | Referral to appropriate feeding therapist /or nutritionist as indicated Assessment for chronic diarrhea |
Musculoskeletal | Orthopedic eval | Referral to orthopedist as needed Miscellaneous/ |
Other | Consultation w/clinical geneticist /or genetic counselor | Multi-specialty care that includes child neurology, pediatrics, clinical genetics, nutrition, gastroenterology, orthopedic, pain management, and physical therapy can help with timely detection and treatment of the multiorgan dysfunction that characterizes ethylmalonic encephalopathy. |
Treatment of Manifestations in Individuals with Ethylmalonic Encephalopathy Manifestation/Concern |
Source: GeneReviews — "Ethylmalonic Encephalopathy"
While clearance of circulating sulfide by a transplanted liver could be beneficial, to date only one instance of liver transplantation in EE has been reported . Although results were encouraging, follow up of this patient and experience with additional patients are necessary to determine therapeutic efficacy of liver transplantation in EE and possible relevance for national or state-mandated newborn screening, particularly in populations with relatively high prevalence of pathogenic variants. Possible future treatments include AAV-mediated gene therapy or liver transplantation . Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "Ethylmalonic Encephalopathy"
View trials for ethylmalonic encephalopathy
Surveillance should be individualized based on symptoms and organs affected. Table 4. Recommended Surveillance for Individuals with Ethylmalonic Encephalopathy
System/Concern | Evaluation/Action | Frequency |
|---|---|---|
Growth | Assess growth monitor for failure to thrive. | At each visit |
Gastrointestinal | Monitor feeding electrolyte status, particularly in those w/severe diarrhea. | — |
Neurologic | Monitor for epileptic crisis; modify therapy according to clinical presentation EEG findings. | Routine |
Source: GeneReviews — "Ethylmalonic Encephalopathy"
Phenotype severity distribution: 3 always present features, 3 very common features, 19 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for ethylmalonic encephalopathy.
16 publications have been identified in PubMed for ethylmalonic encephalopathy. Research spans Basic Science / Preclinical (75%), Diagnostic / Biomarker (6%), and Review / Meta-Analysis (6%).
Research Type | Count | % of Total |
|---|---|---|
Laboratory research | 12 | 75% |
Testing and diagnosis research | 1 | 6% |
Research summaries | 1 | 6% |
Patient case studies | 1 | 6% |
Disease patterns and progression | 1 | 6% |
Marcuzzo MB (2026). [PMID: 42201462](https://pubmed.ncbi.nlm.nih.gov/42201462/). *Neurochem Res*. [Basic Science / Preclinical]
Huang F (2026). [PMID: 41201583](https://pubmed.ncbi.nlm.nih.gov/41201583/). *Archives of toxicology*. [Basic Science / Preclinical]
Giordano F (2026). [PMID: 41500494](https://pubmed.ncbi.nlm.nih.gov/41500494/). *Biochimie*. [Basic Science / Preclinical]
Ruiz-Martinez DA (2026). [PMID: 41551113](https://pubmed.ncbi.nlm.nih.gov/41551113/). *SAGE open medical case reports*. [Case Report / Case Series]
Jaeger B (2026). [PMID: 42046426](https://pubmed.ncbi.nlm.nih.gov/42046426/). *J Inherit Metab Dis*. [Review / Meta-Analysis]
Li J (2025). [PMID: 39729112](https://pubmed.ncbi.nlm.nih.gov/39729112/). *Archives of toxicology*. [Basic Science / Preclinical]
Lang SH (2025). [PMID: 41215814](https://pubmed.ncbi.nlm.nih.gov/41215814/). *Molecular genetics and metabolism reports*. [Basic Science / Preclinical]
Romero-Domínguez JM (2025). [PMID: 40563372](https://pubmed.ncbi.nlm.nih.gov/40563372/). *Antioxidants (Basel, Switzerland)*. [Basic Science / Preclinical]
Marcuzzo MB (2025). [PMID: 40974451](https://pubmed.ncbi.nlm.nih.gov/40974451/). *Neurotoxicity research*. [Basic Science / Preclinical]
Li F (2025). [PMID: 40264823](https://pubmed.ncbi.nlm.nih.gov/40264823/). *Oncology letters*. [Basic Science / Preclinical]
Treatment
Considerations/Other |
Spasticity | Antispastic medications | — |
Dystonia | Muscle relaxants | — |
Contractures | Physical therapy | — |
Seizures | Anti-seizure medication | — |
Severe diarrhea | Maintain hydration caloric intake | Tube feeding often necessary Poor energy metabolism |
oxidative stress | L-carnitine, riboflavin /or coenzyme Q10 supplements (a cocktail of drugs generally used in mitochondrial disorders) other vitamin therapies1 | Off-label compassionate use of N-acetylcysteine (NAC) in combination with metronidazole may be considered as they are the only drugs known to slow disease progression and improve the metabolic abnormalities of EE . |