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Features include always present findings: Elevated urine acetoacetic acid level, 3-hydroxyisovaleric aciduria, Elevated urinary 3-hydroxybutyric acid, and Hyperammonemia and others; and common findings: Lethargy, Low plasma citrulline, Hypoargininemia, and Elevated urine suberic acid level and others. 27 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 2 | Encephalopathy, Global developmental delay |
Digestive system | 2 | Jaundice, Episodic vomiting |
Kidneys and urinary system | 1 | Elevated urinary 3-hydroxybutyric acid |
Metabolism | 1 | Metabolic acidosis |
Lab test results | 1 | Increased circulating lactate concentration |
Lungs and breathing | 1 | Respiratory alkalosis |
Most children with carbonic anhydrase VA (CA-VA) deficiency reported to date have presented during the newborn period (day 2 of life) or in early childhood (up to age 20 months) with hyperammonemic encephalopathy (i.e., lethargy, feeding intolerance, weight loss, tachypnea, seizures, and coma) [, , , ]. However, the range of severity on presentation is probably not yet completely understood given the small number of reported individuals to date. Data on long-term follow up are limited as the oldest known affected individual is only an adolescent (as of 2021). Almost all of the other affected individuals reported (total number still 20) show normal psychomotor development and no further episodes of metabolic crisis.
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
CA5A encodes carbonic anhydrase 5A (305 aa). Mitochondrial carbonic anhydrase that catalyzes the reversible conversion of carbon dioxide to bicarbonate/HCO3. Highest expression in Liver (6.4 TPM) and Brain Substantia nigra (0.1 TPM).
Hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency is caused by mutations in the CA5A gene on chromosome 16.
The CA5A protein participates in Carbonic anhydrase dehydrates bicarbonate (mitochondria) and Carbonic anhydrase hydrates carbon dioxide (mitochondria) pathways.
CA5A is classified as a druggable target (Druggable Genome and Enzyme categories) with score 2.2.
Genotype-phenotype correlations remain to be determined. Of note, because of the high rate of parental consanguinity most affected individuals are homozygous for a pathogenic variant. Interestingly, for family 3 reported by with a homozygous CA5A of exon 6 in whom carbonic anhydrase VA was absent in liver, the phenotype was not more severe than in the other two families with splice site and missense variants and residual (albeit reduced) carbonic anhydrase VA enzymatic activity.
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
No consensus clinical diagnostic criteria for carbonic anhydrase VA (CA-VA) deficiency have been published.
Carbonic anhydrase VA (CA-VA) deficiency should be suspected in children with the following clinical and laboratory findings and family history. Clinical findings include neonatal, infantile, or early childhood-onset of metabolic hyperammonemic encephalopathy (like that observed in the urea cycle disorders) with lethargy, feeding intolerance, weight loss, tachypnea, seizures, and coma.
Laboratory findings
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
Disorders to consider in the differential diagnosis of carbonic anhydrase VA (CA-VA) deficiency are summarized in .
Table 2.
Disorders of Interest in the Differential Diagnosis of CA-VA Deficiency
Gene | Disorder | MOI | Clinical Characteristics
BTD
HLCS | Multiple carboxylase deficiency (biotinidase deficiency holocarboxylase synthetase deficiency) (OMIM 253270) | AR | If untreated, children w/profound defic usually exhibit neurologic abnormalities (seizures, lethargy, muscular hypotonia), cutaneous abnormalities, ataxia, DD, vision problems, hearing loss.
CPS1
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
Genetic testing for CA5A is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency has been reported in the published literature.
No approved treatments are currently available for hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency. The disease remains an area of unmet medical need.
No clinical practice guidelines for carbonic anhydrase VA (CA-VA) deficiency have been published.
To establish the extent of disease and needs in an individual diagnosed with carbonic anhydrase VA (CA-VA) deficiency, the following evaluations are recommended:
Measurement of serum lactate, plasma ammonia, serum glucose, blood gases, plasma amino acids, blood acylcarnitines, urine ketone bodies, and urine organic acid profiles (during periods of illness; when stable for monitoring, preferably fasting)
Liver function parameters (coagulation, albumin, AST, ALT) as acute liver failure can occur in the urea cycle disorders, which are metabolically similar
Consideration of:
Brain MRI to define extent of or to exclude brain edema
Neurodevelopmental testing
Consultation with a medical geneticist, certified genetic counselor, or certified advanced genetic nurse to inform affected individuals and their families about the nature, mode of inheritance, and implications of CA-VA deficiency in order to facilitate medical and personal decision making
During acute episodes. Admit to the hospital children with insufficient intake or refusal to take anything orally and/or signs of metabolic decompensation such as encephalopathy. The following are recommended:
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
Acetazolamide should be avoided, as it inhibits carbonic anhydrase activity. If anti-seizure medication is necessary, avoid topiramate based on its action as a carbonic anhydrase inhibitor.
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
1 trial found
Follow up during infancy and early childhood with a metabolic disease specialist every three to six months for physical and neurologic examinations.
Consider neurodevelopmental testing and measurement of the following: plasma ammonia and amino acids (to check for chronic hyperammonemia and citrulline deficiency as well as general nutritional state); serum lactate and glucose; blood gases; liver parameters; and urine organic acids.
If asymptomatic and no further episodes, monitoring can be relaxed during childhood but a sick day regime/emergency plan should be provided and followed.
Source: GeneReviews — "Carbonic Anhydrase VA Deficiency"
Phenotype severity distribution: 10 always present features, 8 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
8 publications have been identified in PubMed for hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency. Research spans Case Report / Case Series (88%) and Diagnostic / Biomarker (13%).
Manoy S (2026). [PMID: 41737902](https://pubmed.ncbi.nlm.nih.gov/41737902/). *JIMD reports*. [Case Report / Case Series]
Bin Hadyan MF (2026). [PMID: 41736722](https://pubmed.ncbi.nlm.nih.gov/41736722/). *Molecular genetics and metabolism reports*. [Case Report / Case Series]
Fragoso DC (2026). [PMID: 41022560](https://pubmed.ncbi.nlm.nih.gov/41022560/). *AJNR. American journal of neuroradiology*. [Diagnostic / Biomarker]
Abelson N (2026). [PMID: 42194994](https://pubmed.ncbi.nlm.nih.gov/42194994/). *Genes (Basel)*. [Case Report / Case Series]
Baheer Abdulwahhab S (2025). [PMID: 40862046](https://pubmed.ncbi.nlm.nih.gov/40862046/). *Cureus*. [Case Report / Case Series]
Keehan L (2025). [PMID: 41113665](https://pubmed.ncbi.nlm.nih.gov/41113665/). *Molecular genetics and metabolism reports*. [Case Report / Case Series]
Mathew RP (2024). [PMID: 38949089](https://pubmed.ncbi.nlm.nih.gov/38949089/). *American journal of medical genetics. Part A*. [Case Report / Case Series]
Al-Thihli K (2024). [PMID: 38974611](https://pubmed.ncbi.nlm.nih.gov/38974611/). *JIMD reports*. [Case Report / Case Series]
Data assembled from 9 of 12 sources · Last updated Sep 20, 2026, 8:43 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center