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Lissencephaly due to LIS1 mutation is a cerebral malformation with epilepsy characterized predominantly by posterior isolated lissencephaly with developmental delay, intellectual disability and epilepsy that usually evolves from West syndrome to Lennox-Gastaut syndrome. Additional features include muscular hypotonia, acquired microcephaly, failure to thrive and poor control of airways leading to aspiration pneumonia.
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 4:31 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Features include: Axial hypotonia, Cerebellar hypoplasia, Hypoplasia of the brainstem, and Subcortical band heterotopia and 12 more.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 7 | Hypoplasia of the brainstem, Seizure, Global developmental delay |
Muscles | 1 | Axial hypotonia |
Head and neck | 1 | Secondary microcephaly |
Together, isolated lissencephaly sequence (ILS) and subcortical band heterotopia (SBH) comprise the "agyria-pachygyria-band" spectrum of cortical malformations that are caused by deficient neuronal migration during embryogenesis. The term lissencephaly refers to a "smooth brain" with absent (agyria) or abnormally wide gyri (pachygyria). To date, almost 200 individuals have been identified with an intragenic pathogenic variant in PAFAH1B1 causative of ILS and SBH. The following description of the phenotypic features associated with this condition is based on these reports.
Affected newborns may appear normal or may have mild-to-moderate hypotonia, feeding difficulties, and poor head control. During the first years, neurologic examination typically demonstrates poor visual tracking ...
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
PAFAH1B1 function has not been fully characterized.
Lissencephaly due to LIS1 mutation is associated with mutations in the PAFAH1B1 gene on chromosome 17.
Note: This chapter on PAFAH1B1-related lissencephaly/ subcortical band heterotopia (SBH) excludes Miller-Dieker syndrome. The term "Miller-Dieker syndrome" is frequently used to refer to individuals with larger deletions of 17p13.3 that include both PAFAH1B1 and YWHAE (a region of about 1.3 Mb harboring many genes) .
PAFAH1B1-related lissencephaly/SBH should be suspected in individuals with the following clinical and MRI findings.
Clinical features (nonspecific)
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
The greatest difficulty in the diagnosis of lissencephaly and subcortical band heterotopia (SBH) is recognizing the malformation. Lissencephaly is subdivided into several types depending on gradient and grade of gyral malformation and cortical thickness . Several different cortical malformations that are sometimes mistaken for lissencephaly have been described, including severe congenital microcephaly with reduced number of gyri, cobblestone malformations as seen in Walker-Warburg and other syndromes, polymicrogyria, and polymicrogyria-like variants associated with pathogenic variants of tubulin genes. This leads to inefficient molecular testing and incorrect diagnosis and counseling. Clinical features can help distinguish children who have lissencephaly from those who have other brain malformations. Children with lissencephaly usually have normal or slightly small OFC at birth (-3 SD) and diffuse hypotonia except for mildly increased tone at the wrists and ankles. Children with severe congenital (i.e., primary) microcephaly and gyral abnormalities have smaller birth OFC (≤-3 SD) and may be hypotonic or spastic. Infants with polymicrogyria, especially when the frontal lobes are involved, frequently have spastic quadriparesis. Brain imaging (preferably by MRI) and/or neuropathologic examination during autopsy is necessary to confirm a diagnosis of lissencephaly. Classic Lissencephaly The differential diagnosis of classic lissencephaly is summarized in . These disorders are distinguished by mode of inheritance, grade and gradient of lissencephaly or SBH (see Clinical Description, ), presence of other congenital anomalies, clinical features, and results of molecular genetic testing. Table 3. Genes of Interest in the Differential Diagnosis of Classic Lissencephaly
Genetic testing for PAFAH1B1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for lissencephaly due to LIS1 mutation has been reported in the published literature.
No approved treatments are currently available for lissencephaly due to LIS1 mutation. The disease remains an area of unmet medical need.
No consensus management recommendations for PAFAH1B1-related lissencephaly/ subcortical band heterotopia (SBH) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with PAFAH1B1-related lissencephaly/SBH, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia
System/Concern | Evaluation | Comment |
|---|---|---|
Constitutional | Measurement of growth parameters | To incl head circumference |
Neurologic | Neurologic eval | To incl brain MRI1; Consider EEG if seizures are a concern. |
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Contractures, clubfoot, kyphoscoliosis; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) Gastrointestinal/ |
Feeding | Gastroenterology / nutrition / feeding team eval |
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
View trials for lissencephaly due to LIS1 mutation
Table 6.
Recommended Surveillance for Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia
System/Concern | Evaluation | Frequency
| • Measurement of growth parameters
Eval of nutritional status safety of oral intake
| At each visit
| Monitor for constipation.
| Monitor for evidence of aspiration, respiratory insufficiency.
| • Monitor those w/seizures as clinically indicated.
Assess for new manifestations incl unusual spells or developmental regression.1
| Monitor developmental progress educational needs.
| Physical medicine, OT/PT assessment of mobility, self-help skills
Miscellaneous/
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination.
Eyes | Ophthalmologic eval | Annually or as clinically indicated
| Audiologic eval
OT = occupational therapy; PT = physical therapy
1. If present, a neurology consultation should be performed and an EEG considered.
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
No clinical trials have been registered for lissencephaly due to LIS1 mutation.
31 publications have been identified in PubMed for lissencephaly due to LIS1 mutation. Research spans Basic Science / Preclinical (52%), Case Report / Case Series (26%), and Epidemiology / Natural History (16%).
Research Type | Count | % of Total |
|---|---|---|
Laboratory research | 16 | 52% |
Patient case studies | 8 | 26% |
Disease patterns and progression | 5 | 16% |
Testing and diagnosis research | 1 | 3% |
Research summaries | 1 | 3% |
Pombero A (2026). [PMID: 41639296](https://pubmed.ncbi.nlm.nih.gov/41639296/). *Scientific reports*. [Diagnostic / Biomarker]
Liu J (2026). [PMID: 41765937](https://pubmed.ncbi.nlm.nih.gov/41765937/). *Cancer Cell Int*. [Basic Science / Preclinical]
Matoo S (2026). [PMID: 41997870](https://pubmed.ncbi.nlm.nih.gov/41997870/). *J Neurosci*. [Basic Science / Preclinical]
Liu F (2026). [PMID: 42032854](https://pubmed.ncbi.nlm.nih.gov/42032854/). *Insect Sci*. [Basic Science / Preclinical]
Proepper CR (2026). [PMID: 42177523](https://pubmed.ncbi.nlm.nih.gov/42177523/). *Orphanet J Rare Dis*. [Epidemiology / Natural History]
Rao Q (2026). [PMID: 41708859](https://pubmed.ncbi.nlm.nih.gov/41708859/). *Nature*. [Basic Science / Preclinical]
Mahendran G (2025). [PMID: 40806509](https://pubmed.ncbi.nlm.nih.gov/40806509/). *International journal of molecular sciences*. [Case Report / Case Series]
Karlinski Zur M (2025). [PMID: 40312467](https://pubmed.ncbi.nlm.nih.gov/40312467/). *Nature communications*. [Case Report / Case Series]
Majmudar PR (2025). [PMID: 40378956](https://pubmed.ncbi.nlm.nih.gov/40378956/). *The Journal of biological chemistry*. [Basic Science / Preclinical]
Kendrick AA (2025). [PMID: 40410592](https://pubmed.ncbi.nlm.nih.gov/40410592/). *Nature structural & molecular biology*. [Basic Science / Preclinical]
Disorder |
|---|
MOI |
|---|
Gradient of LIS or SBH1,2 |
|---|
Features Differentiating Disorder from PAFAH1B1 Malformations |
|---|
Baraitser-Winter cerebrofrontofacial syndrome | AD | ap | Trigonocephaly; shallow orbits; ptosis; colobomas of the iris, choroid, or both; DD, LIS, epilepsy in some persons; malformations of other organ systems | — |
APC2 | Cortical dysplasia complex, w/other brain malformations 10 (OMIM 618677) | AR | pa | Severe DD, epilepsy, cortical dysplasia or LIS, thin CC, heterotopias |
CDK5 | CDK5 lissencephaly (OMIM 616342) | AD | Diffuse | Early lethal course. Agyria, agenesis of CC, cerebellar pontine hypoplasia; facial dysmorphisms; arthrogryposis multiplex |
CRADD | ID w/variant lissencephaly (OMIM 614499) | AR | ap | head circumference / megalencephaly, "thin" LIS DCX |
DCX-related disorders | XL | ap | SBH in females, LIS in males. | — |
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
To incl eval of aspiration risk nutritional status; Consider eval for gastrostomy tube placement in those w/dysphagia /or aspiration risk. |
Respiratory | Eval of respiratory status | — |
Eyes2 | Ophthalmologic eval | To assess for vision, abnormal ocular movement, strabismus |
Hearing3 | Audiologic eval | Assess for hearing loss. Miscellaneous/ |
Other | Consultation w/clinical geneticist /or genetic counselor | To incl genetic counseling Family support/resources |
Treatment of Manifestations in Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia Manifestation/Concern | Treatment | Considerations/Other DD/ID |