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No HPO annotations are available for this condition.
Together, isolated lissencephaly sequence (ILS) and subcortical band heterotopia (SBH) comprise the "agyria-pachygyria-band" spectrum of cortical malformations that are caused by deficient neuronal migration during embryogenesis. The term lissencephaly refers to a "smooth brain" with absent (agyria) or abnormally wide gyri (pachygyria). To date, almost 200 individuals have been identified with an intragenic pathogenic variant in PAFAH1B1 causative of ILS and SBH. The following description of the phenotypic features associated with this condition is based on these reports.
Note: This chapter on PAFAH1B1-related lissencephaly/ subcortical band heterotopia (SBH) excludes Miller-Dieker syndrome. The term "Miller-Dieker syndrome" is frequently used to refer to individuals with larger deletions of 17p13.3 that include both PAFAH1B1 and YWHAE (a region of about 1.3 Mb harboring many genes) .
PAFAH1B1-related lissencephaly/SBH should be suspected in individuals with the following clinical and MRI findings.
Clinical features (nonspecific)
No approved treatments are currently available for classic lissencephaly. The disease remains an area of unmet medical need.
Gene therapy approaches for classic lissencephaly have been reported in the published literature.
No consensus management recommendations for PAFAH1B1-related lissencephaly/ subcortical band heterotopia (SBH) have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with PAFAH1B1-related lissencephaly/SBH, the evaluations summarized (if not performed as part of the evaluation that led to diagnosis) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia
Table 6.
Recommended Surveillance for Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia
System/Concern | Evaluation | Frequency
| • Measurement of growth parameters
No clinical trials have been registered for classic lissencephaly.
25 publications have been identified in PubMed for classic lissencephaly. Research spans Case Report / Case Series (44%), Review / Meta-Analysis (20%), and Basic Science / Preclinical (20%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 11 | 44% |
Data assembled from 4 of 12 sources · Last updated Sep 18, 2026, 8:51 AM UTC
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about classic lissencephaly
Affected newborns may appear normal or may have mild-to-moderate hypotonia, feeding difficulties, and poor head control. During the first years, neurologic examination typically demonstrates poor visual tracking ...
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
The greatest difficulty in the diagnosis of lissencephaly and subcortical band heterotopia (SBH) is recognizing the malformation. Lissencephaly is subdivided into several types depending on gradient and grade of gyral malformation and cortical thickness . Several different cortical malformations that are sometimes mistaken for lissencephaly have been described, including severe congenital microcephaly with reduced number of gyri, cobblestone malformations as seen in Walker-Warburg and other syndromes, polymicrogyria, and polymicrogyria-like variants associated with pathogenic variants of tubulin genes. This leads to inefficient molecular testing and incorrect diagnosis and counseling. Clinical features can help distinguish children who have lissencephaly from those who have other brain malformations. Children with lissencephaly usually have normal or slightly small OFC at birth (-3 SD) and diffuse hypotonia except for mildly increased tone at the wrists and ankles. Children with severe congenital (i.e., primary) microcephaly and gyral abnormalities have smaller birth OFC (≤-3 SD) and may be hypotonic or spastic. Infants with polymicrogyria, especially when the frontal lobes are involved, frequently have spastic quadriparesis. Brain imaging (preferably by MRI) and/or neuropathologic examination during autopsy is necessary to confirm a diagnosis of lissencephaly. Classic Lissencephaly The differential diagnosis of classic lissencephaly is summarized in . These disorders are distinguished by mode of inheritance, grade and gradient of lissencephaly or SBH (see Clinical Description, ), presence of other congenital anomalies, clinical features, and results of molecular genetic testing. Table 3. Genes of Interest in the Differential Diagnosis of Classic Lissencephaly
Gene | Disorder | MOI | Gradient of LIS or SBH1,2 | Features Differentiating Disorder from PAFAH1B1 Malformations |
|---|---|---|---|---|
Baraitser-Winter cerebrofrontofacial syndrome | AD | ap | Trigonocephaly; shallow orbits; ptosis; colobomas of the iris, choroid, or both; DD, LIS, epilepsy in some persons; malformations of other organ systems | — |
APC2 | Cortical dysplasia complex, w/other brain malformations 10 (OMIM 618677) | AR | pa | Severe DD, epilepsy, cortical dysplasia or LIS, thin CC, heterotopias |
CDK5 | CDK5 lissencephaly (OMIM 616342) | AD | Diffuse | Early lethal course. Agyria, agenesis of CC, cerebellar pontine hypoplasia; facial dysmorphisms; arthrogryposis multiplex |
CRADD | ID w/variant lissencephaly (OMIM 614499) | AR | ap | head circumference / megalencephaly, "thin" LIS DCX |
DCX-related disorders | XL | ap | SBH in females, LIS in males. | — |
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
System/Concern | Evaluation | Comment |
|---|---|---|
Constitutional | Measurement of growth parameters | To incl head circumference |
Neurologic | Neurologic eval | To incl brain MRI1; Consider EEG if seizures are a concern. |
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Contractures, clubfoot, kyphoscoliosis; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) Gastrointestinal/ |
Feeding | Gastroenterology / nutrition / feeding team eval | To incl eval of aspiration risk nutritional status; Consider eval for gastrostomy tube placement in those w/dysphagia /or aspiration risk. |
Respiratory | Eval of respiratory status | — |
Eyes2 | Ophthalmologic eval | To assess for vision, abnormal ocular movement, strabismus |
Hearing3 | Audiologic eval | Assess for hearing loss. Miscellaneous/ |
Other | Consultation w/clinical geneticist /or genetic counselor | To incl genetic counseling Family support/resources |
Treatment of Manifestations in Individuals with PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia Manifestation/Concern | Treatment | Considerations/Other DD/ID |
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
View trials for classic lissencephaly
| At each visit
| Monitor for constipation.
| Monitor for evidence of aspiration, respiratory insufficiency.
| • Monitor those w/seizures as clinically indicated.
Assess for new manifestations incl unusual spells or developmental regression.1
| Monitor developmental progress educational needs.
| Physical medicine, OT/PT assessment of mobility, self-help skills
Miscellaneous/
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination.
Eyes | Ophthalmologic eval | Annually or as clinically indicated
| Audiologic eval
OT = occupational therapy; PT = physical therapy
1. If present, a neurology consultation should be performed and an EEG considered.
Source: GeneReviews — "PAFAH1B1-Related Lissencephaly/ Subcortical Band Heterotopia"
5 |
20% |
Laboratory research | 5 | 20% |
Disease patterns and progression | 3 | 12% |
New treatment approaches | 1 | 4% |
Proepper CR (2026). [PMID: 42177523](https://pubmed.ncbi.nlm.nih.gov/42177523/). *Orphanet J Rare Dis*. [Epidemiology / Natural History]
Zakić H (2025). [PMID: 39857780](https://pubmed.ncbi.nlm.nih.gov/39857780/). *Biomedicines*. [Case Report / Case Series]
Mahendran G (2025). [PMID: 40806509](https://pubmed.ncbi.nlm.nih.gov/40806509/). *International journal of molecular sciences*. [Basic Science / Preclinical]
Peer S (2025). [PMID: 40192980](https://pubmed.ncbi.nlm.nih.gov/40192980/). *Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology*. [Case Report / Case Series]
Kim SY (2025). [PMID: 39513527](https://pubmed.ncbi.nlm.nih.gov/39513527/). *American journal of medical genetics. Part A*. [Review / Meta-Analysis]
Gamber A (2025). [PMID: 41004695](https://pubmed.ncbi.nlm.nih.gov/41004695/). *Neurology*. [Case Report / Case Series]
Cakar MM (2025). [PMID: 41134416](https://pubmed.ncbi.nlm.nih.gov/41134416/). *Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology*. [Review / Meta-Analysis]
Jing XY (2025). [PMID: 40011197](https://pubmed.ncbi.nlm.nih.gov/40011197/). *Prenatal diagnosis*. [Case Report / Case Series]
Watanabe H (2025). [PMID: 41111707](https://pubmed.ncbi.nlm.nih.gov/41111707/). *Cureus*. [Case Report / Case Series]
Ji X (2025). [PMID: 40390087](https://pubmed.ncbi.nlm.nih.gov/40390087/). *BMC medical genomics*. [Review / Meta-Analysis]