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Features include: Short stature, Seizure, Syringomyelia, and Slurred speech and 29 more.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 9 | Seizure, Slurred speech, Aggressive behavior |
Head and neck |
SETD2 function has not been fully characterized.
Luscan-Lumish syndrome is associated with mutations in the SETD2 gene on chromosome 3.
SETD2-NDD with normal growth and without macrocephaly. The variant is the only SETD2 pathogenic variant known to be associated with this phenotype . Features of the three individuals with this finding include the following:
No consensus clinical diagnostic criteria for SETD2 neurodevelopmental disorders (SETD2-NDDs) have been published. SETD2-NDD represents a clinical spectrum with the most common well-defined phenotype being SETD2-NDD with macrocephaly/overgrowth, although not everyone has overgrowth; a specific, somewhat different phenotype has been reported in association with a particular pathogenic variant, c.5218CT (p.Arg1740Trp), which leads to a higher frequency of multiple congenital anomalies (MCA) compared to those without this genetic change . This chapter covers both of these recognized phenotypes.
No approved treatments are currently available for Luscan-Lumish syndrome. The disease remains an area of unmet medical need.
No clinical practice guidelines for SETD2 neurodevelopmental disorders have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SETD2 neurodevelopmental disorders (SETD2-NDD), the evaluations summarized (SETD2-NDD w/or w/o macrocephaly/overgrowth) and (SETD2-NDD w/MCA) if not performed as part of the evaluation that led to the diagnosis are recommended. Table 5. Recommended Evaluations Following Initial Diagnosis: SETD2-NDD with or without Macrocephaly/Overgrowth
and summarize the recommended surveillance for individuals with SETD2-NDD with or without macrocephaly/overgrowth and those with SETD2-NDD with MCA, respectively. Table 9. Recommended Surveillance for Individuals with SETD2-NDD with or without Macrocephaly/Overgrowth
No clinical trials have been registered for Luscan-Lumish syndrome.
6 publications have been identified in PubMed for Luscan-Lumish syndrome. Research spans Case Report / Case Series (83%) and Basic Science / Preclinical (17%).
Ünsel-Bolat G (2026). [PMID: 41466099](https://pubmed.ncbi.nlm.nih.gov/41466099/). *Dev Neurobiol*. [Case Report / Case Series]
Lucain M (2025). [PMID: 40104911](https://pubmed.ncbi.nlm.nih.gov/40104911/). *Am J Med Genet A*. [Case Report / Case Series]
Romano F (2025). [PMID: 39907171](https://pubmed.ncbi.nlm.nih.gov/39907171/). *Birth Defects Res*. [Case Report / Case Series]
Wójcik-Niklewska B (2025). [PMID: 40574928](https://pubmed.ncbi.nlm.nih.gov/40574928/). *World J Clin Cases*. [Case Report / Case Series]
Atterton C (2025). [PMID: 41023182](https://pubmed.ncbi.nlm.nih.gov/41023182/). *Sci Rep*. [Basic Science / Preclinical]
Orozco-Fernández M (2025). [PMID: 40892041](https://pubmed.ncbi.nlm.nih.gov/40892041/). *J Craniofac Surg*. [Case Report / Case Series]
Data assembled from 7 of 12 sources · Last updated Sep 18, 2026, 4:35 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about Luscan-Lumish syndrome
3
Macrocephaly, Long face, Mandibular prognathia |
Growth and development | 1 | Short stature |
Muscles | 1 | Generalized hypotonia |
Bones and joints | 1 | Advanced ossification of carpal bones |
Digestive system | 1 | Excessive hunger (polyphagia) |
Arms and legs | 1 | Long foot |
Ears | 1 | Recurrent otitis media |
To date, 30 individuals have been reported with a SETD2 pathogenic variant, excluding those who have deletions of the 3p21.31 region that includes SETD2 and other adjacent genes [, , , , , , , , ]. SETD2 neurodevelopmental disorder (SETD2-NDD) with macrocephaly/overgrowth, the most common phenotype, can also include developmental delay / intellectual disability, obesity, advanced bone age, and behavioral findings (most typically an autism spectrum disorder). This spectrum also includes three individuals (2 male and 1 female) with a heterozygous pathogenic SETD2 variant who have normal growth . SETD2-NDD with multiple congenital anomalies (MCA) presents with microcephaly, brain malformations, profound intellectual disability, severe failure to thrive, and multiple congenital anomalies including congenital heart defects, urogenital anomalies, and ophthalmic findings such as Coats disease of the retina. These individuals have a pathogenic SETD2 variant . Table 2. SETD2 Neurodevelopmental Disorders: Phenotypes by Selected Distinguishing Features
Feature | SETD2-NDD with or without Macrocephaly/Overgrowth1 | SETD2-NDD with MCA (c.5218CT pathogenic variant) |
|---|---|---|
# of reported persons | 18 | 12 |
Macrocephaly (incl relative macrocephaly) | 12/17 | 0 |
Intellectual disability | 14/18 (typically in moderate range) | 12/12 (typically in profound range) |
Overgrowth /or obesity | 9/18 | 0 |
Advanced bone age | 5/6 examined | 1/1 person examined |
Autism spectrum disorder | 10/13 | 0 |
Microcephaly | 0 | 12/122 |
Failure to thrive in infancy3 | 0 | 12/12 |
Hypotonia | 5/8 | 12/12 |
Seizures | 3/18 | 7/12 |
Brain malformations | 7/11 examined | 12/12 |
Ophthalmologic | 4/6 examined | 10/10 examined |
Hearing loss (conductive or mixed) | 1/2 examined | 7/9 |
Skeletal abnormalities | 5/7 | 12/12 |
Congenital heart defects | 1/3 reported | 11/12 |
Urogenital anomalies | 2/2 reported | 11/12 Data from , , , , , , , , MCA = multiple congenital anomalies; NDD = neurodevelopmental disorder 1. This column also includes those individuals with a heterozygous c.5219GA (p.Arg1740Gln) pathogenic variant in SETD2. 2. |
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Growth. Head circumference may drift toward the lower end of normal, but not within the microcephalic range.
Developmental delay and intellectual disability. All three developed some speech by age two years.
Behavioral problems. Autism spectrum disorder was not observed. One individual has anxiety, executive functioning impairment, and slow processing speed.
Other associated features (each reported in 1 individual):
Strabismus
Myopia
Laryngomalacia
Constipation
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Because the phenotypic features associated with SETD2 neurodevelopmental disorder (SETD2-NDD) without macrocephaly/overgrowth or multiple congenital anomalies (MCA) are not sufficient to diagnose this condition, all disorders with intellectual disability without other distinctive findings should be considered in the differential diagnosis. See OMIM Autosomal Dominant, Autosomal Recessive, Nonsyndromic X-Linked, and Syndromic X-Linked Intellectual Developmental Disorder Phenotypic Series. For the differential diagnosis of SETD2-NDD with macrocephaly/overgrowth, see . For the differential diagnosis of SETD2-NDD with MCA, see . Table 3. Differential Diagnosis of SETD2-NDD with Macrocephaly/Overgrowth
Gene(s) | DiffDx Disorder | MOI | Clinical Features of DiffDx Disorder |
|---|---|---|---|
FMR1 | Fragile X syndrome (See FMR1 Disorders.) | XL | Macrocephaly, ID |
Sotos syndrome | AD | Macrocephaly, overgrowth, ID | Pointed chin, small mouth, everted lower lip NFIX |
Beckwith-Wiedemann syndrome | AD1 | Generalized overgrowth, DD | Macroglossia, hypoglycemia, coarse facies, hepatomegaly, ear lobe creases |
RNF125 | Tenorio syndrome (OMIM 616260) | AD | Macrocephaly, overgrowth, ID |
DICER1 | GLOW syndrome (See DICER1 Tumor Predisposition.) | AD | Macrocephaly, overgrowth, ID |
HERC1 | MDFPMR (OMIM 617011) | AR | Macrocephaly, overgrowth, ID |
PIK3CA | Megalencephaly-capillary malformation-polymicrogyria syndrome (See PIK3CA-Related Overgrowth Spectrum.) | Somatic | Macrocephaly, overgrowth, ID |
PTEN hamartoma tumor syndrome | AD | Macrocephaly, autism | Hamartomata, tumors TET3 |
Beck-Fahrner syndrome | ADAR | Macrocephaly, overgrowth, ID | Elongated myopathic facies; short stature microcephaly in some |
FIBP | Thauvin-Robinet-Faivre syndrome (OMIM 617107) | AR | Macrocephaly, overgrowth, ID |
SUZ12 | Imagawa-Matsumoto syndrome (OMIM 618786) | AD | Macrocephaly, overgrowth, ID |
Costello syndrome | AD | Macrocephaly, ID | Fetal overgrowth w/postnatal short stature, coarse facial features, loose redundant skin |
EED | Cohen-Gibson syndrome (See EED-Related Overgrowth.) | AD | Macrocephaly, overgrowth, ID |
Simpson-Golabi-Behmel syndrome | XL | Macrocephaly, overgrowth, ID | Coarse facies; hearing loss; large liver, spleen, kidneys; skeletal anomalies ... |
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Genetic testing for SETD2 is available. Testing is considered confirmatory for diagnosis.
System/Concern | Evaluation | Comment |
|---|---|---|
Constitutional | Measurement of height, weight, head circumference | To assess for overgrowth /or obesity |
Development | Developmental assessment | Incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention / special education Neurobehavioral/ |
Psychiatric | Neuropsychiatric eval | Persons age 12 mos: screen for concerns incl sleep disturbances, ADHD, anxiety, /or traits suggestive of ASD. |
Neurologic | Neurologic eval | Incl brain MRI; Consider EEG if seizures are a concern. |
Endocrinologic | TSH free T4 | To screen for hypothyroidism Clinical eval for signs symptoms of precocious puberty |
Musculoskeletal | Orthopedics / physical medicine rehab / PT/OT eval | Incl assessment of:; Gross motor fine motor skills; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) |
Eyes | Ophthalmologic exam | Incl assessment of visual acuity strabismus |
Hearing | Audiologic eval | Assess for sensorineural /or conductive hearing loss. |
Cardiovascular | Echocardiogram | To assess for structural heart defects |
Genitourinary | Physical exam for cryptorchidism in males | Consult w/urologist as needed. Genetic |
counseling | By genetics professionals1 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of SETD2-NDD to facilitate medical personal decision making Family support resources |
System/Concern | Evaluation | Comment |
Constitutional | Measurement of height, weight, head circumference | To assess for FTT in infants |
Gastrointestinal | Gastroenterology/ nutrition/ feeding team eval | Incl eval of aspiration risk nutritional status.; Consider eval for gastrostomy tube placement in those w/dysphagia /or aspiration risk. |
Respiratory | Assess for signs symptoms of hypoventilation /or tracheomalacia. | Consider referral to pulmonologist. |
Development | Developmental assessment | Incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Neurologic | Neurologic eval | Incl brain MRI; Consider EEG if seizures are a concern. |
Hearing | Audiologic eval | Assess for sensorineural /or conductive hearing loss. |
Eyes | Ophthalmologic exam | Incl assessment of visual acuity, slit lamp exam (for cataracts), fundus exam (for optic nerve hypoplasia, retinal telangiectasia, retinal detachment) |
Cardiovascular | Echocardiogram | For congenital heart defects |
Genitourinary | Physical exam for cryptorchidism in males | Consider referral to urologist. Kidney ultrasound exam |
Endocrinologic | Electrolyte panel1 | To assess for hyponatremia; If present, consider eval for SIADH.2 TSH free T4 |
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | Incl assessment of:; Gross motor fine motor skills; Contractures, clubfoot, kyphoscoliosis; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) Genetic |
counseling | By genetics professionals3 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of SETD2-NDD to facilitate medical personal decision making Family... |
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
View trials for Luscan-Lumish syndrome
Evaluation |
|---|
Frequency |
|---|
Constitutional | Measurement of growth parameters | Monthly weight checks at home for obesity prevention starting in 2nd yr of life Developmental |
delay | Monitor developmental progress educational needs. | At each visit Psychiatric/ Behavioral |
Endocrinologic | TSH free T4 | Annually or as clinically indicated Clinical eval for signs symptoms of precocious puberty |
Musculoskeletal | Clinical eval for scoliosis | At each visit in childhood until completion of puberty |
Eyes | Ophthalmologic eval | Annually or as clinically indicated Hearing |
Community | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination. | At each visit Table 10. |
Source: GeneReviews — "SETD2 Neurodevelopmental Disorders"
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).