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Macrocephaly-developmental delay syndrome is a rare, intellectual disability syndrome characterized by macrocephaly, mild dysmorphic features (frontal bossing, long face, hooded eye lids with small, downslanting palpebral fissures, broad nasal bridge, and prominent chin), global neurodevelopmental delay, behavioral abnormalities (e.g. anxiety, stereotyped movements) and absence or generalized tonic-clonic seizures. Additional features reported in some patients include craniosynostosis, fifth finger clinodactyly, recurrent pneumonia, and hepatosplenomegally.
Features include always present findings: Prominent forehead, High palate, Retrognathia, and Frontal bossing; and very common findings: Anxiety, Macrocephaly, Intellectual disability, and Delayed speech and language development. 29 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 10 | Bilateral tonic-clonic seizure, Generalized non-motor (absence) seizure, Anxiety |
Head and neck | 3 | High palate, Macrocephaly, Mandibular prognathia |
Arms and legs | 2 | Prominent fingertip pads, Clinodactyly of the 5th finger |
Digestive system | 2 | Enlarged liver (hepatomegaly), Enlarged spleen (splenomegaly) |
Muscles | 1 | Low muscle tone (hypotonia) |
Lungs and breathing | 1 | Recurrent pneumonia |
Blood and immune system | 1 | Enlarged spleen (splenomegaly) |
KPTN-related disorder is characterized by mild-to-profound intellectual disability, developmental delay, neurobehavioral/psychiatric manifestations (including anxiety and findings associated with autism spectrum disorder such as stereotypies, hyperactivity, repetitive speech, and impaired social communication), postnatal progressive macrocephaly, and seizures. To date, 54 individuals from 32 families have been identified with biallelic pathogenic variants in KPTN [, , , , , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. Table 2. KPTN-Related Disorder: Frequency of Select Features
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Intellectual disability | 100% | Mild to profound |
Developmental delay |
KPTN encodes kaptin, actin binding protein (436 aa). As part of the KICSTOR complex functions in the amino acid-sensing branch of the TORC1 signaling pathway. Highest expression in Brain Cerebellum (41.7 TPM) and Brain Cerebellar Hemisphere (39.8 TPM).
Macrocephaly-developmental delay syndrome is associated with mutations in the KPTN gene on chromosome 19.
KPTN is classified as a druggable target with score 0.0.
Although no specific genotype-phenotype correlations have been conclusively identified, biallelic predicted loss-of-function variants (e.g., frameshift, nonsense) appear to have a greater degree of severity of ID and increased frequency of seizures when compared with biallelic protein-altering variants (e.g., missense, inframe indels).
Source: GeneReviews — "KPTN-Related Disorder"
KPTN-related disorder should be considered in probands with the following clinical, laboratory, and neuroimaging findings and family history.
Clinical findings
Source: GeneReviews — "KPTN-Related Disorder"
Table 3. Disorders Associated with Macrocephaly and Intellectual Disability/ Developmental Delay in the Differential Diagnosis of KPTN-Related Disorder
Gene | Disorder | MOI | Selected Features of Disorder |
|---|---|---|---|
CHD8-related neurodevelopmental disorder w/overgrowth | AD | ASD; Downslanted palpebral fissures; Seizures | GI issues (e.g., recurrent constipation ± periods of diarrhea); Developmental regression of social, speech, /or motor skills in infancy early childhood |
FMR1 | Fragile X syndrome1 (See FMR1 Disorders.) | XL | ASD; Behavioral issues (e.g., hyperactivity); Frontal bossing; Prominent jaw; Seizures |
Smith-Kingsmore syndrome | AD |
Genetic testing for KPTN is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for macrocephaly-developmental delay syndrome has been reported in the published literature.
No approved treatments are currently available for macrocephaly-developmental delay syndrome. The disease remains an area of unmet medical need.
No clinical practice guidelines for KPTN-related disorder have been published.
To establish the extent of disease and needs in an individual diagnosed with KPTN-related disorder, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 4.
KPTN-Related Disorder: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Developmental assessment | • To incl motor, adaptive, cognitive, speech-language eval
To incl assessment for balance problems oral apraxia
Eval for early intervention/ special education
Neurobehavioral/
| Neuropsychiatric eval | For persons age 12 months: screening for neurobehavioral/psychiatric manifestations incl anxiety, stereotypies, impaired social interaction, hyperactivity
| Assessment of head circumference |
Neurologic eval | Low threshold for EEG if seizures are a concern.
| Assessment for recurrent infections incl otitis media respiratory tract infections |
| Audiology eval | Assessment for recurrent otitis conductive hearing impairment
| Eval by ophthalmologist | Assessment for strabismus, nystagmus, amblyopia
| • Assessment for hypoglycemia in neonatal period, in infancy, w/intercurrent illness
Assessment for hypo- hyperthyroidism hyperprolactinemia
|
| Assessment for joint hypermobility, scoliosis, chest wall deformity |
Source: GeneReviews — "KPTN-Related Disorder"
Current studies of the efficacy of mTOR inhibitors are under way in KPTN-related disorder mouse models. Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions.
Source: GeneReviews — "KPTN-Related Disorder"
View trials for macrocephaly-developmental delay syndrome
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 6. KPTN-Related Disorder: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Psychiatric | Assessment for anxiety, stereotypies, impaired social interaction, hyperactivity, repetitive speech | Annually or as needed |
Neurologic | Assess head circumference. | At each visit throughout childhood adolescence; Monitor those w/seizures as clinically indicated.; Assess for new manifestations such as seizures, balance problems, oral apraxia. |
Hearing | Audiology eval | Annually or as needed |
Ophthalmologic | Assessment for strabismus vision deficits | Annually |
Endocrine | Monitor for hypoglycemia. | Monitor in neonatal period then at each visit during intercurrent illness.; Education on symptoms of hypoglycemia for parents/caregivers Assess thyroid function w/thyroxine TSH. |
Musculoskeletal | Assess for joint hypermobility, chest wall deformity, scoliosis. | At each visit (annually or as needed) |
Family/Community | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning). | At each visit OT = occupational therapy; PT = physical therapy; TSH = thyroid-stimulating hormone |
Source: GeneReviews — "KPTN-Related Disorder"
Phenotype severity distribution: 4 always present features, 4 very common features, 11 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for macrocephaly-developmental delay syndrome.
211 publications have been identified in PubMed for macrocephaly-developmental delay syndrome. Kisho has analyzed 120 by research type. Research spans Review / Meta-Analysis (43%), Case Report / Case Series (25%), and Basic Science / Preclinical (17%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 51 | 43% |
Patient case studies | 30 | 25% |
Laboratory research | 20 | 17% |
Disease patterns and progression | 13 | 11% |
Testing and diagnosis research | 4 | 3% |
Other research | 1 | 1% |
Clinical study results | 1 | 1% |
Anderson EN (2026). [PMID: 41468891](https://pubmed.ncbi.nlm.nih.gov/41468891/). *Am J Hum Genet*. [Basic Science / Preclinical]
Zelaya JE (2026). [PMID: 32119379](https://pubmed.ncbi.nlm.nih.gov/32119379/). *Unknown Journal*. [Basic Science / Preclinical]
Shaikh AF (2026). [PMID: 40853300](https://pubmed.ncbi.nlm.nih.gov/40853300/). *J Hand Surg Am*. [Review / Meta-Analysis]
Chandwani D (2026). [PMID: 31335004](https://pubmed.ncbi.nlm.nih.gov/31335004/). *Unknown Journal*. [Basic Science / Preclinical]
Tana C (2026). [PMID: 41980458](https://pubmed.ncbi.nlm.nih.gov/41980458/). *J Fr Ophtalmol*. [Review / Meta-Analysis]
Asghar E (2026). [PMID: 41401403](https://pubmed.ncbi.nlm.nih.gov/41401403/). *Ocul Immunol Inflamm*. [Review / Meta-Analysis]
Biswas I (2025). [PMID: 41357736](https://pubmed.ncbi.nlm.nih.gov/41357736/). *Cureus*. [Case Report / Case Series]
Lin S (2025). [PMID: 40922359](https://pubmed.ncbi.nlm.nih.gov/40922359/). *Medicine (Baltimore)*. [Case Report / Case Series]
Godler DE (2025). [PMID: 39804213](https://pubmed.ncbi.nlm.nih.gov/39804213/). *Curr Opin Psychiatry*. [Review / Meta-Analysis]
Loberti L (2025). [PMID: 39953909](https://pubmed.ncbi.nlm.nih.gov/39953909/). *Genet Med*. [Epidemiology / Natural History]
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 1:53 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Neurobehavioral/ |
psychiatric manifestations | 84% | Anxiety, stereotypies, impaired social interactions, hyperactivity, repetitive speech |
Hypotonia | 55% | — |
Macrocephaly | 49% | Postnatal progressive w/onset in 1st year of life |
Seizures | 44% | Generalized tonic-clinic, absence, focal/complex partial |
Characteristic craniofacial features | 84% | 84% of affected persons have frontal bossing ≥1 additional feature (short downslanted palpebral fissures, hypertelorism, depressed nasal bridge, broad nasal tip, tall, broad chin, thick vermilion of lower lip). |
Recurrent infections | 27% | — |
Strabismus/nystagmus | 12% | — |
Ketotic hypoglycemia | 8% | Developmental delay is a variable feature. Early motor development is characterized by hypotonia in 55% of affected individuals (21/38), with delayed motor milestones in 60% (30/50). The average age at walking was two years (range: 1-5 years). |
Source: GeneReviews — "KPTN-Related Disorder"
Skin pigmentary abnormalities NSD1 |
Sotos syndrome | AD | Facial features (frontal bossing, pointed chin, downslanted palpebral fissures); Hypotonia; Seizures; Ocular issues (incl strabismus nystagmus); Behavioral issues; Ventriculomegaly | Generalized overgrowth; Additional syndromic features incl congenital heart disease, renal anomalies, scoliosis |
NFIX | NFIX-related Malan syndrome (OMIM 614753) | AD | Behavioral issues (incl a specific anxious profile ADHD); Downslanted palpebral fissures; Hypotonia; Ocular issues (incl strabismus nystagmus); Ventriculomegaly |
PPP2R5D-related neurodevelopmental disorder | AD | ASD; Hypertelorism; Seizures; Tone abnormalities | Hypotonic facies PTEN |
PTEN hamartoma tumor syndrome | AD | ASD; Scoliosis; Pectus excavatum | Cancer predisposition; Dermatologic features incl skin tags/papules |
Hamartomatous tumors Autism/pervasive developmental disorder macrocephaly (OMIM 605309) | AD | ASD; Depressed nasal bridge; Frontal bossing; Hepatomegaly/splenomegaly; Recurrent infections | Hypogammaglobulinemia |
SETD2 | SETD2-related neurodevelopmental disorder ± macrocephaly/overgrowth (See SETD2-Related Neurodevelopmental Disorders.) | AD | Anxiety; ASD; Downslanted palpebral fissures; Hypotonia; Seizures; Ventriculomegaly |
STRADA | Polyhydramnios megalencephaly symptomatic epilepsy (OMIM 611087) | AR | Facial features: frontal bossing, prominent chin, hypertelorism; Hypotonia; Seizures; Strabismus; Ventriculomegaly |
SZT2 | Early infantile epileptic encephalopathy 18 (OMIM 615476) | AR | Facial features: frontal bossing, hypertelorism, downslanted palpebral fissures, high-arched palate; Hypotonia; Persistent cavum septum pellucidum; Seizures; Ventriculomegaly |
Source: GeneReviews — "KPTN-Related Disorder"