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Features include always present findings: Epicanthus, Autism, Intellectual disability, and Global developmental delay and others; and very common findings: Low muscle tone (hypotonia) and Feeding difficulties. 88 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 10 | Inability to walk, Seizure, Intellectual disability |
Digestive system | 4 | Gastroesophageal reflux, Feeding difficulties, Vomiting |
Arms and legs | 4 | Hand clenching, Recurrent hand flapping, Ulnar deviation of the hand |
Head and neck | 4 | Microcephaly, Thin upper lip vermilion, High palate |
Growth and development | 4 | Failure to thrive, Disproportionate tall stature, Intrauterine growth retardation |
Muscles | 3 | Low muscle tone (hypotonia), Generalized hypotonia, Contracture of the proximal interphalangeal joint of the 4th finger |
Bones and joints | 2 | Sideways curvature of the spine (scoliosis), Contracture of the proximal interphalangeal joint of the 4th finger |
Eyes | 1 | Strabismus |
Blood and immune system | 1 | Recurrent infections |
Hormones | 1 | Precocious puberty |
Age of onset: infancy, at birth, before birth.
To date, 44 individuals from 40 families have been identified with a pathogenic variant in ASXL3 [, , , , , , , , , , , , , , , , , , ]. The authors have collected clinical and molecular data on another 45 affected individuals in an additional cohort study that will be submitted for publication. The following description of the phenotypic features associated with this condition is based on these published reports and the additional cohort study (n=89 affected individuals). Table 2. Select Features of ASXL3-Related Disorder
Feature | % of Personsw/Feature | Comment |
|---|---|---|
Speech delay | 100% | Most are nonverbal or have very limited speech. Intellectual disability |
Typically moderate to severe Facial dysmorphism | 98% |
ASXL3 encodes ASXL transcriptional regulator 3 (2,248 aa). Putative Polycomb group (PcG) protein. Highest expression in Testis (6.7 TPM) and Ovary (4.5 TPM).
Severe feeding difficulties-failure to thrive-microcephaly due to ASXL3 deficiency syndrome is associated with mutations in the ASXL3 gene on chromosome 18.
ASXL3 is classified as a druggable target with score 0.0.
No genotype-phenotype correlations for ASXL3 have been identified.
Source: GeneReviews — "ASXL3-Related Disorder"
Formal clinical diagnostic criteria for ASXL3-related disorder have not been established.
ASXL-related disorder should be considered in individuals with the following clinical findings:
Source: GeneReviews — "ASXL3-Related Disorder"
Because the clinical presentation of ASXL3-related disorder is typically nonspecific global developmental delay, all disorders associated with intellectual disability without other distinctive findings should be considered in the differential diagnosis. See OMIM Autosomal Dominant, Autosomal Recessive, Nonsyndromic X-Linked, and Syndromic X-Linked Intellectual Developmental Disorder Phenotypic Series. Note: Heterozygous pathogenic variants ASXL1 and ASXL2, the other two genes in the ASXL gene family , are associated with Bohring-Opitz syndrome (BOS) and Shashi-Pena syndrome, respectively.
Source: GeneReviews — "ASXL3-Related Disorder"
Genetic testing for ASXL3 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for severe feeding difficulties-failure to thrive-microcephaly due to ASXL3 deficiency syndrome has been reported in the published literature.
No approved treatments are currently available for severe feeding difficulties-failure to thrive-microcephaly due to ASXL3 deficiency syndrome. The disease remains an area of unmet medical need.
Consensus clinical management guidelines for ASXL3-related disorder have not been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with ASXL3-related disorder, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 3. Recommended Evaluations Following Initial Diagnosis in Individuals with ASXL3-Related Disorder
System/Concern | Evaluation | Comment |
|---|---|---|
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval Eval for early intervention/ special education Psychiatric/ |
Behavioral | Neuropsychiatric eval | For persons age 12 mos: screen for concerns incl sleep disturbances, ADD, /or features suggestive of ASD. |
Constitutional | Measurement of growth parameters | To evaluate for growth deficiency Gastrointestinal/ |
Feeding | Gastroenterology/ nutrition/ feeding team eval | To incl eval of aspiration risk, GERD, nutritional status Consider eval for gastrostomy tube placement in those w/dysphagia /or aspiration risk. |
Neurologic | Neurologic eval |
Source: GeneReviews — "ASXL3-Related Disorder"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "ASXL3-Related Disorder"
2 trials found
Table 5.
Recommended Surveillance for Individuals with ASXL3-Related Disorder
System/Concern
|
Evaluation
|
Frequency
| Monitor developmental progress educational needs. | At each visit
Psychiatric/
| Behavioral assessment for attention aggressive or self-injurious behavior
| • Measurement of growth parameters
Eval of nutritional status signs/symptoms of GERD or feeding aversion
| • Monitor those w/seizures as clinically indicated.
Assess for new manifestations incl seizures changes in tone.
| Physical medicine, OT/PT assessment of mobility, self-help skills
| Assess for signs/symptoms of sleep disturbance sleep apnea.
Miscellaneous/
| Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources) care coordination.
| Eval by dentist | Every 6 mos after age 3 yrs or as clinically indicated
Eyes | Ophthalmology eval | Annually or as clinically indicated
GERD = gastroesophageal disease; OT = occupational therapy; PT = physical therapy
Source: GeneReviews — "ASXL3-Related Disorder"
Phenotype severity distribution: 19 always present features, 2 very common features, 23 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
2 clinical trials registered, 1 recruiting. Interventions under study include drug therapy and other interventions. Pipeline includes 1 PHASE1. Research is primarily sponsored by academic and government institutions.
128 publications have been identified in PubMed for severe feeding difficulties-failure to thrive-microcephaly due to ASXL3 deficiency syndrome. Research spans Review / Meta-Analysis (61%), Basic Science / Preclinical (15%), and Case Report / Case Series (10%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 78 | 61% |
Laboratory research | 19 | 15% |
Patient case studies | 13 | 10% |
Disease patterns and progression | 8 | 6% |
Testing and diagnosis research | 5 | 4% |
Other research | 3 | 2% |
Clinical study results | 2 | 2% |
Mariano D (2026). [PMID: 42194125](https://pubmed.ncbi.nlm.nih.gov/42194125/). *Children (Basel)*. [Case Report / Case Series]
Serpieri V (2026). [PMID: 41720098](https://pubmed.ncbi.nlm.nih.gov/41720098/). *Am J Hum Genet*. [Basic Science / Preclinical]
Yaddanapudi S (2026). [PMID: 42111080](https://pubmed.ncbi.nlm.nih.gov/42111080/). *Front Neurol*. [Other]
Woods E (2026). [PMID: 41368945](https://pubmed.ncbi.nlm.nih.gov/41368945/). *Am J Med Genet A*. [Diagnostic / Biomarker]
Anderson EN (2026). [PMID: 41468891](https://pubmed.ncbi.nlm.nih.gov/41468891/). *Am J Hum Genet*. [Basic Science / Preclinical]
Peter B (2026). [PMID: 40891523](https://pubmed.ncbi.nlm.nih.gov/40891523/). *Am J Med Genet A*. [Case Report / Case Series]
Amado C (2026). [PMID: 40975490](https://pubmed.ncbi.nlm.nih.gov/40975490/). *Ann Allergy Asthma Immunol*. [Review / Meta-Analysis]
Piring A (2026). [PMID: 40808361](https://pubmed.ncbi.nlm.nih.gov/40808361/). *Am J Med Genet A*. [Epidemiology / Natural History]
Sahoo SS (2025). [PMID: 39475954](https://pubmed.ncbi.nlm.nih.gov/39475954/). *Blood*. [Review / Meta-Analysis]
Pena C (2025). [PMID: 40146047](https://pubmed.ncbi.nlm.nih.gov/40146047/). *Minerva Med*. [Review / Meta-Analysis]
Data assembled from 8 of 12 sources · Last updated Sep 20, 2026, 5:38 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
See .
Hypotonia | 86% | Central hypotonia can be assoc w/ tone in upper lower limbs. |
Behavioral concerns | 78% | Incl autistic traits or an ASD diagnosis |
Feeding difficulties | 78% | Most affected persons in the early stages are referred w/feeding difficulties failure to thrive. |
Skeletal findings | 74% | — |
Eyes | ~50% | Strabismus is the most common finding. |
Seizures | 38% | GTCS absence seizures; most have normal brain MRI imaging. Speech delay. All individuals with ASXL3-related disorder have delayed speech and language development. First word was achieved in 32% of affected individuals, at an average age of 28.8 months [Authors, personal observation]. |
Source: GeneReviews — "ASXL3-Related Disorder"
To incl brain MRI; Consider EEG if seizures are a concern.
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Contractures, pes planus, scoliosis joint hypermobility; Mobility, activities of daily living, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) |
Respiratory | Assessment for sleep disturbance /or evidence of sleep apnea | — |
Dental | Age-appropriate dental eval | To assess for malocclusion hypodontia |
Eyes | Ophthalmologic eval | To assess for strabismus vision Miscellaneous/ |
Other | Consultation w/clinical geneticist /or genetic counselor | To incl genetic counseling Family support resources |
Treatment of Manifestations in Individuals with ASXL3-Related Disorder Manifestation/Concern | Treatment | Considerations/Other |
DD/ID | See . | Poor weight gain/ Failure to thrive |
GERD | Anti-reflux medication; fundoplication or percutaneous endoscopic gastrostomy in severe situations | Consider consultation w/gastroenterology specialist in those w/severe disease. |
Epilepsy | Standardized treatment w/ASM by experienced neurologist | Many ASMs may be effective; none has been demonstrated effective specifically for this disorder.; Education of parents/caregivers1 Pes planus, joint contractures, |
scoliosis | Standard treatment per orthopedist | — |
Sleep apnea | Standard treatment per ENT/ sleep specialist | Malocclusion |
/or hypodontia | Standard treatment per dentist/orthodontist | Strabismus /or |
refractive error | Standard treatment per ophthalmologist | Family/ Community |