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A form of SCID characterized by profound lymphopenia and very low immunoglobulin levels of all isotypes resulting in severe and recurrent opportunistic infections.
Features include always present findings: Aplasia of the thymus, Motor delay, Increased total eosinophil count, and Severe combined immunodeficiency and others; and common findings: Increased circulating IgE concentration, Failure to thrive, Inflammatory abnormality of the skin, and Decreased total lymphocyte count and others. 50 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Blood and immune system | 11 | Autoimmune hemolytic anemia, Recurrent bacterial infections, B-cell lymphoma |
Digestive system | 4 | Enlarged liver (hepatomegaly), Enlarged spleen (splenomegaly), Diarrhea |
Lungs and breathing | 4 | Recurrent pneumonia, Asthma, Pneumonia |
Lab test results | 3 | Increased circulating IgE concentration, Absent specific antibody response, Anti-thyroid peroxidase antibody positivity |
Growth and development | 2 | Failure to thrive, Growth arrest lines |
Skin | 2 | Inflammatory abnormality of the skin, Skin rash |
Hormones | 2 | Adrenal cortical sclerosis, Anti-thyroid peroxidase antibody positivity |
Metabolism | 1 | Recurrent fever |
Bones and joints | 1 | Abnormal pelvic girdle bone morphology |
Ears | 1 | Recurrent otitis media |
Adenosine deaminase (ADA) deficiency (also referred to as adenosine deaminase 1 deficiency, or ADA1 deficiency) is a systemic purine metabolic disorder that primarily affects lymphocyte development, viability, and function [, , , ]. ADA is expressed in all cells, but is most highly expressed in lymphocytes; thus, in some individuals, ADA deficiency can affect non-lymphoid organs such as the lungs, liver, kidneys, and nervous system (resulting in behavioral abnormalities) . The phenotypic spectrum of ADA deficiency includes typical early-onset severe combined immunodeficiency (ADA-SCID), diagnosed in infancy (about 80% of individuals), and less severe "delayed" or "late-onset" combined immunodeficiency (ADA-CID), diagnosed in older children and adults (15%-20% of individuals).
Source: GeneReviews — "Adenosine Deaminase Deficiency"
ADA encodes adenosine deaminase (363 aa). Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine. Plays an important role in purine metabolism and in adenosine homeostasis. Highest expression in Cells EBV-transformed lymphocytes (71.4 TPM) and Stomach (34.3 TPM).
Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency is caused by mutations in the ADA gene on chromosome 20.
ADA is classified as a druggable target (Cell Surface, Druggable Genome, Enzyme, and External Side Of Plasma Membrane categories) with score 4.5.
182 pathogenic variants reported in ADA in ClinVar, including hotspot variants NP_000013.2:p.Tyr172Ter (3-star review) and 555196.
Variant | Significance | Review Stars | Hotspot |
|---|---|---|---|
NP_000013.2:p.Tyr172Ter | Likely pathogenic | 3 stars | Yes |
555196 | Pathogenic | — | Yes |
552928 | Pathogenic | 2 stars | Yes |
550821 | Pathogenic | 3 stars | Yes |
549915 | Pathogenic | 3 stars | Yes |
In the era of newborn screening based on detection of T-cell receptor excision circles (TRECs)/ kappa-deleting recombination excision circles (KRECs) to identify lymphopenia and, increasingly, tandem mass spectrometry (TMS) to detect elevated levels of ADA substrates, ADA deficiency is often identified in asymptomatic infants. Given the broad clinical spectrum of ADA deficiency, determining the diagnosis, prognosis, and need for immediate treatment are challenges for physicians who may have limited experience with ADA deficiency. In this situation, useful guidance can be provided by understanding the correlation between ADA genotype, level of dAXP in red blood cells, ADA catalytic activity in red blood cells, and clinical phenotype.
Source: GeneReviews — "Adenosine Deaminase Deficiency"
Adenosine deaminase (ADA) deficiency cannot be diagnosed solely on clinical grounds. The Primary Immune Deficiency Treatment Consortium (PIDTC) has established laboratory-based definitions for severe combined immunodeficiency (SCID) .
The two scenarios in which ADA deficiency may be considered are a and a of any age with suggestive clinical and laboratory findings of combined immunodeficiency (CID). In both scenarios, individuals identified warrant immediate subspecialty immunology evaluation and steps taken to ensure the safety of a baby or older individual pending establishment of the diagnosis and treatment.
T-cell receptor excision circles (TRECs) to detect T-cell lymphopenia. As of December 10, 2018, all newborns in the Uni...
Source: GeneReviews — "Adenosine Deaminase Deficiency"
lists selected genes known to be associated with typical severe combined immunodeficiency (SCID). Note: Other genes (not included in ) have been associated with SCID-like phenotypes in rare instances. Table 3. Typical Severe Combined Immunodeficiency (SCID): Genetic Causes
Gene(s) | Disorder | MOI | Lymphocyte Phenotype | Comments | NBS |
|---|---|---|---|---|---|
T | B | NK Types of typical SCID w/identical clinical presentations IL2RG |
Genetic testing for ADA is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency has been reported in the published literature.
No approved treatments are currently available for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency. An additional 2 compounds hold orphan drug designation.
While no drugs are FDA-approved specifically for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency, some of the following designated compounds may be used off-label in clinical practice. Treatment decisions should be made in consultation with a specialist familiar with this condition.
The following drugs have received orphan drug designation from the FDA for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency. Orphan designation reflects regulatory interest and does not indicate approval for treatment.
Brand Name | Generic Name | Sponsor | Designated | Exclusivity End | Designation Status |
|---|---|---|---|---|---|
autologous bone marrow CD34+ cells transduced ex vivo with a self activating HIV-1 -based lentiviral vector, EFS-ADA | autologous bone marrow CD34+ cells transduced ex vivo with a self activating HIV-1 -based lentiviral vector, EFS-ADA | Donald B. Kohn, M.D. | 2014 | — | Designated |
autologus CD34+ cells transfected with retroviral vector containing adenosine deaminase gene | autologus CD34+ cells transfected with retroviral vector containing adenosine deaminase gene | Fondazione Telethon ETS | 2009 | — | Designated |
Consensus recommendations for managing severe combined immunodeficiency (SCID) due to adenosine deaminase (ADA) deficiency have been published . These guidelines focus on correction of the ADA deficiency and the restoration of immune function. No recommendations or guidelines have been developed for the management of systemic (non-immunologic) abnormalities associated with ADA deficiency, which varies among medical centers and practitioners.
To establish the extent of disease and needs in an individual diagnosed with ADA deficiency, the following evaluations are recommended, some of which may have been performed as part of the diagnostic evaluation. The frequency and timing of testing may vary by the treating practitioner and the individual's clinical presentation.
Source: GeneReviews — "Adenosine Deaminase Deficiency"
To ensure the safety of the infant or older individual with ADA-SCID or ADA-CID pending definitive treatment to achieve immunocompetence, parents and other care providers need to avoid the following:
Breastfeeding and breast milk, until maternal cytomegalovirus (CMV) status is established by CMV serologies. CMV is a chronic infection, and intermittent viral shedding in various bodily fluids occurs unpredictably. If maternal CMV serology is negative, breast milk may be considered safe for feeding.
Note: Use of pasteurized breast milk while the infant is being prepared for HSCT remains controversial given the severe negative effects of CMV infection in the outcome of HSCT.
Exposure to young children, sick contacts, or individuals with cold sores in order to decrease the risk of transmission of disease to the infant
Crowded enclosed spaces due to risk of infectious exposure
Live viral vaccines for the infant as well as household contacts until after immunocompetence is restored following HSCT
Transfusion of non-irradiated blood products .
Source: GeneReviews — "Adenosine Deaminase Deficiency"
Hematopoietic stem cell gene therapy (HSC-GT). An experimental approach to HSC-GT for ADA-SCID employing a self-inactivating lentiviral vector has been investigated at the University of California, Los Angeles, and Great Ormond Street Hospital, London. Several studies (NCT01852071, NCT02999984, NCT01380990) have demonstrated safety and efficacy, and no leukemic transformations have been described in ADA HSC-GT recipients treated with lentiviral vectors. This approach has resulted in survival and safety comparable to that of HSCT . Investigation of this promising form of gene therapy was interrupted by the COVID-19 pandemic and other factors , but a new study at the University of California, Los Angeles, is under way (NCT05432310).
Source: GeneReviews — "Adenosine Deaminase Deficiency"
View trials for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency
Response to targeted therapy. To monitor the individual's response to targeted treatment, the following evaluations are recommended.
Immune function. Frequent evaluation of lymphocyte counts, serum immunoglobulin levels, and various in vitro tests of cellular and humoral immune function should be performed during ERT and following allogenic HSCT and HSC-GT .
Biochemical monitoring. If the individual continues to receive ERT for more than one year, periodic monitoring of plasma ADA activity (due to Revcovi®) and red blood cell dAXP levels should be performed. The monitoring interval may be extended to every three to four months in the second year of treatment, and twice yearly thereafter .
Source: GeneReviews — "Adenosine Deaminase Deficiency"
Phenotype severity distribution: 10 always present features, 21 common features.
Estimated prevalence: 1-9 in 1,000,000 (Rare).
No clinical trials have been registered for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency.
47 publications have been identified in PubMed for severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency. Research spans Case Report / Case Series (26%), Review / Meta-Analysis (21%), and Diagnostic / Biomarker (15%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 12 | 26% |
Research summaries | 10 | 21% |
Testing and diagnosis research | 7 | 15% |
Disease patterns and progression | 7 | 15% |
New treatment approaches | 4 | 9% |
Other research | 3 | 6% |
Laboratory research | 3 | 6% |
Clinical study results | 1 | 2% |
Abou-El-Enein M (2026). [PMID: 41882406](https://pubmed.ncbi.nlm.nih.gov/41882406/). *Nat Med*. [Other]
Kose H (2026). [PMID: 41705238](https://pubmed.ncbi.nlm.nih.gov/41705238/). *Front Immunol*. [Epidemiology / Natural History]
Beliën J (2026). [PMID: 41480770](https://pubmed.ncbi.nlm.nih.gov/41480770/). *J Clin Invest*. [Basic Science / Preclinical]
Petrik M (2026). [PMID: 42011870](https://pubmed.ncbi.nlm.nih.gov/42011870/). *J Appl Lab Med*. [Diagnostic / Biomarker]
Torun ES (2026). [PMID: 41066191](https://pubmed.ncbi.nlm.nih.gov/41066191/). *Clin Exp Rheumatol*. [Review / Meta-Analysis]
Bali P (2026). [PMID: 41563156](https://pubmed.ncbi.nlm.nih.gov/41563156/). *J Allergy Clin Immunol*. [Other]
de Manuel Gómez C (2026). [PMID: 42159144](https://pubmed.ncbi.nlm.nih.gov/42159144/). *Pediatr Pulmonol*. [Gene Therapy / Novel Therapeutics]
Engelstein DK (2026). [PMID: 41539726](https://pubmed.ncbi.nlm.nih.gov/41539726/). *J Rheumatol*. [Epidemiology / Natural History]
Jeganathan K (2026). [PMID: 42170593](https://pubmed.ncbi.nlm.nih.gov/42170593/). *J Hum Immun*. [Diagnostic / Biomarker]
Brumm VL (2026). [PMID: 41608119](https://pubmed.ncbi.nlm.nih.gov/41608119/). *J Hum Immun*. [Clinical Trial Publication]
Data assembled from 10 of 12 sources · Last updated Sep 21, 2026, 4:52 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
— |
— |
X-linked SCID | XL | + | Affects males only; atypical X-SCID can be observed1; may be assoc w/Omenn syndrome.2 | + | — |
JAK3 | JAK3-SCID (OMIM 600802) | AR | + | Affects both males females. | + |
IL7R | IL7R-SCID (OMIM 608971) | AR | + | + | + Other types of typical SCID (ordered alphabetically by assoc gene) |
ADA | ADA deficiency (topic of this GeneReview; incl for comparison) | AR | Less severe "delayed" or "late-onset" CID if ADA deficiency is incomplete | ±3 | — |
AK2 | Reticular dysgenesis (OMIM 267500) | AR | Rare | + | — |
CD3DCD3ECD247 (CD3Z) | TCR deficiency (OMIM 615617, 615615, 610163) | AR | /Low | + | + |
CORO1A | CORO1A deficiency (OMIM 615401) | AR | /Low | ± | ± |
DCLRE1C | SCID Athabaskan (OMIM 602450) | AR | + | 10% carrier rate among Athabaskan-speaking Native Americans (e.g., Navajo, Apache); may be assoc w/Omenn syndrome.2 | + |
PNP | PNP deficiency4 | AR | ± | ± | Rare (1%-2% of persons w/CID); affects both males females. |
PRKDC | DNAPKCS deficiency (OMIM 615966) | AR | + | Rare | + |
PTPRC (CD45) | CD45 deficiency (OMIM 608971) | AR | + | ± | + RAG1 |
RAG2 | RAG-deficient SCID (OMIM 601457) | AR | + | Atypical X-SCID can be observed1; may be assoc w/Omenn syndrome.2 | +6 ADA = adenosine deaminase; AR = autosomal recessive; CID = combined immune deficiency; MOI = mode of inheritance; NBS = newborn screening; XL = X-linked 1. For immunophenotype information, see X-Linked Severe Combined Immunodeficiency. |
Source: GeneReviews — "Adenosine Deaminase Deficiency"